Array 1 1135-3185 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBH01000022.1 Lacticaseibacillus paracasei strain DTA83 Lac03_trimmed_(paired)_merged_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1135 36 97.2 30 ................................A... TCATCTCATGGCGTCCTGAGGGGTCCAGGC 1201 36 97.2 30 ................................A... CATCAGTCGGATATATGTTTGCACGTCTAT 1267 36 100.0 30 .................................... GTTGTTTACCTTTCATGCTGATACCTGTGT 1333 36 100.0 30 .................................... TCGATGCGATACTGATGGTTGCGCCTTGGA 1399 36 100.0 30 .................................... AATTCAAAATGGTGGAAGGAAACGACTTAG 1465 36 100.0 30 .................................... AGAATAGACTTCGAGGTATGCAGATCAATG 1531 36 100.0 30 .................................... TTACAAAATTGTTGAACTGCGCCAAGTTCT 1597 36 100.0 30 .................................... AGCGCCATGTACAATGAACTTGTAAGATAA 1663 36 100.0 30 .................................... TTTTCAGATTCCTGAGCCGATCGCAAATCG 1729 36 100.0 30 .................................... CCGAGTGCATTCGGTGAATCAACCCTACAA 1795 36 100.0 30 .................................... AACGGCAAAAGCGTGAGGCTGAGCAAGCTA 1861 36 100.0 30 .................................... TGCATTTTTACTTTTTCACGTTGCACTAGG 1927 36 100.0 30 .................................... GGTGGCGCTGGAAACTGGATAAACCATTAT 1993 36 100.0 30 .................................... AAAGACTTGCAAGGCGTTCAGCGCTTGCTG 2059 36 100.0 30 .................................... TAAAAATCAATCAAAGAACGGCGCAAAAAA 2125 36 100.0 30 .................................... GATTCTCTTCGCCAGTTCTGTGTAGCTTTC 2191 36 100.0 30 .................................... AGAACAAGTACCGATCGAAAAGGGTATTGG 2257 36 100.0 30 .................................... ACGCGGCCCGCTATCTGGTTTACAACTTCG 2323 36 100.0 30 .................................... CAGAACTGGTAACCGATCTTATCAACAAAG 2389 36 97.2 30 .............................A...... TGAAGTCATGGGGCTTTCTGACCCAAACTC 2455 36 100.0 30 .................................... ACGATGACAACCTTGAACTGTATTACTCAG 2521 36 100.0 30 .................................... ACATGAGACGAACCAACGATCAATCCGTGG 2587 36 100.0 30 .................................... GTCAGGATGATCTCGTAGTGATGCCGGTGG 2653 36 100.0 30 .................................... GAACGAAAGACAGGTGATCAGGATGGCGGT 2719 36 100.0 30 .................................... TCACAATTGTTGGCCTATTGCCGAAGTATA 2785 36 100.0 30 .................................... TTGTTTCCGGTGTTCCGATTGAGTATTTGA 2851 36 100.0 30 .................................... AATCGCATGAGAGCGTCATTGCGGATTGTG 2917 36 100.0 30 .................................... GCTGTGTTGTCATACGTGTAACCAGTGCCA 2983 36 100.0 30 .................................... AAAATCAACTCAGAAACAGGCACATCATCA 3049 36 100.0 0 .................................... - Deletion [3085] 3085 35 75.0 30 -CAAA.....AT....A.G................. AGGAAATTCGAGTTCTTCCCGCAATTGATG 3150 36 86.1 0 C............................G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 98.5 29 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGCTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCAATGGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTCGACGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGACTGAGATTTCTCTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGTTCTCATTGAGTTCTCAAAAGTGAACCGAAGGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG # Right flank : CAAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCTGTCTAAAGCAATATCGTAGTAACCACACACTCTCAAGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATACATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGTATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGTACGGCAAG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //