Array 1 2204828-2206961 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030241.1 Moraxella bovis strain Epp63 (300) chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2204828 36 100.0 27 .................................... ACTTTTTTAGAGCCAGTACATATAATA 2204891 36 100.0 26 .................................... GTTTGGCGGTGGTTTTGACTTGACAC 2204953 36 100.0 25 .................................... TAGTGAGCTAATGCAATATTTAGAG 2205014 36 100.0 28 .................................... CACAAAATGACAAAATATTAACTATTAT 2205078 36 100.0 27 .................................... CGACGTTTTCGCCGTAACAAAGCCGCC 2205141 36 100.0 28 .................................... TATGTATTTACGCTATAAAAAAATGTTG 2205205 36 100.0 28 .................................... TCATAAAGTCTCTGGCGGTGCTAAAAAG 2205269 36 100.0 29 .................................... CCTTTATCGGCTGCCACCACCAAATAGGG 2205334 36 100.0 26 .................................... GGAATGTGTACTTTCATCGCCGTATC 2205396 36 100.0 29 .................................... TCGGCAACTTTTCAATATCTGCTTTCGTA 2205461 36 100.0 27 .................................... GTCGTTTGCATGTCGCTCTATGGGGTT 2205524 36 100.0 30 .................................... ATGATTGGCTAGCATTAAAGTTTATTGGGT 2205590 36 100.0 26 .................................... CCAGAGAAAAATTAGATTTGACACAG 2205652 36 100.0 28 .................................... GAAAGACTGGTTAAAATTGCTGGCACGT 2205716 36 100.0 29 .................................... ACACCAAACCTTGCTGATAAGCAAGAAAA 2205781 36 100.0 27 .................................... GTTTTTGCATGATTGCACCTGTATTTT 2205844 36 100.0 28 .................................... GGTTATACACCATTTTTGGTGTAATCAA 2205908 36 100.0 29 .................................... CCCAATACATTCATACTCATTTGCGTGGA 2205973 36 100.0 28 .................................... CCTAAAATATGGCGTTTCACATTCAATG 2206037 36 100.0 27 .................................... AAGTGAAAACCAAAGGTAAGCTAAAAG 2206100 36 100.0 28 .................................... TGCACATACTCCACCGCTTGATGTACCT 2206164 36 100.0 29 .................................... CCCAATACATTCATACTCATTTGCGTGGA 2206229 36 100.0 28 .................................... CCTAAAATATGGCGTTTCACATTCAATG 2206293 36 100.0 27 .................................... AAGTGAAAACCAAAGGTAAGCTAAAAG 2206356 36 100.0 28 .................................... TGCACATACTCCACCGCTTGATGTACCT 2206420 36 100.0 27 .................................... ACGACTTCATTAAGTTGGTTTAGATAA 2206483 36 100.0 27 .................................... AGTATACGCCGTCTTAGTCTTAGGCAG 2206546 36 100.0 27 .................................... TATATAGTCAAAACTTTTTAAAGGGTT 2206609 36 100.0 28 .................................... TTGACTATGGCAAAGCCTTTGACTGTGT 2206673 36 100.0 28 .................................... ATAATTGGCGTATCTCATACCAAGTAAA 2206737 36 100.0 27 .................................... ATTATGACAGATGACCGCTATCCAGAC 2206800 36 100.0 27 .................................... TGATAACTGGGATTGTATGGTTTGTGG 2206863 36 100.0 27 .................................... TACCTTCGTCCATAATCCAGCCGACGC 2206926 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 34 36 100.0 28 GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT # Left flank : TAGTTTTGATGTTGCCAAGCTTTGACATACAAGCAAATGGAGAAGATGTATGATAATCGTCAGTTATGATATCAGTGATAATAAAGTGCGTGGACGATTTGCCAAATTTTTAATGCAATATGGCGATAGATTGCAATATTCGGTGTACGAAATCCAAAACAGCGAACGCATTTTAAATATCATCACCGAAAAAATAAAAGCAGAATTTGAGCCTTTATTTACAGGGGCGGATAGTGTGATTATTTTTCGGTTTACAGAACGTGAAGTATTAAGGTTTGGCCATGCCAAACATCGCAATGAGGATTTGTTGATTTTATAAAAAGTCTTGGAAAAAATGATGAGGTTTGTTATAATAAGAGAGCTAAATCAAGCTAAAATATTTACTTTGCAAACCCCAGTCTTAATGCGTGATTTATCATGTTTTGTCGGTAAAAATGATTATTTTTTGTGCAAAAAACTTGCTAATTTCTCAAAAAATCATTAAAAATACCTCAAAACGG # Right flank : TATCACAAATTTTCTCGTATTGGTTGGAAGTCTAACGATTTTTTTAAACTTCTAGGTGCAACACTTGTAATCCATTTCAAAATTAAGGGTATCTTTATGAAAACATTAAACCTCTTTCCAAACTAAAAACAACCCCTTATAAACACTGGGGTTAAAGTTTTTAAAAATCTATAAAAATCGGGGGTTGGAAAGAAGCCTATTAAATTTTTGGAATTGCATTAGGGCTTTTTGGCAATCATCACCGCCCGTTTGGGGGCAGGATAACCTTCGGCGGTTTTGGTCTTATCATCTTTATCCAAAAAGTCCACCAATGACTGATAATTCATCCACTCGGTCGCACGCTGTTCATCAGTGCTGGTTACATCAATATCCACACAACGCACATCAACAAAACCCACCTTGCCAAGCCATTTTGTCAACGCAGGCACGCTCGGCAAAAAATACACGTTATTCATCATCGCATAACGCTCAAACGGCACCAACGTGGTATGTTCATCGCC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 2794208-2792750 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030241.1 Moraxella bovis strain Epp63 (300) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2794207 28 100.0 32 ............................ GTCTGTGGTTAGTTTTTGGCATACGAACATTT 2794147 28 100.0 32 ............................ ATTAGACGGATTAGGGCTAGGCACAGGCTTTG 2794087 28 100.0 32 ............................ AACGGAGTTCATACCCGCTTTGTTACCGCTAA 2794027 28 100.0 32 ............................ ACTTAAAGACCTTAGCAGTGGCATAAACTGTA 2793967 28 100.0 20 ............................ TGTAGGACTGCTAGGAGATG Deletion [2793920] 2793919 28 100.0 32 ............................ TAGTGATAATCCTGCACCCAGTGACAACCCTA 2793859 28 100.0 32 ............................ ATTAAAGGATCAGATATTATGCTTAAAAATTA 2793799 28 100.0 32 ............................ TAGTGATAATCCTGCACCCAGTGACAACCCTA 2793739 28 100.0 32 ............................ TGTAGGACTGCTAGGAGATGGGCTAGGAGATG 2793679 28 100.0 32 ............................ CAAGCCCCGAAACACAGCCAAAGCCTGTGCCT 2793619 28 100.0 32 ............................ TAGCACAAATGCAAATTAACCGCCTAAAAAAC 2793559 28 100.0 32 ............................ AAAAAGCCCCCTACATCGTTACAATGCCAACC 2793499 28 100.0 32 ............................ TTGAACGCTTTGCAGAACAAGAAAACAGAAGC 2793439 28 100.0 32 ............................ TGTAGGACTACTAGGAGATGGACTAGGAGATG 2793379 28 100.0 32 ............................ TTTCTATGGCTTGTGCCGCCCCTTGACCAGCA 2793319 28 100.0 32 ............................ GGCGATAGCCGATTAACCGCCGAGCAGTTGAA 2793259 28 100.0 32 ............................ CATCAATGTCAATTTGTGTATCTGTATCTTTT 2793199 28 100.0 32 ............................ ACTTAAAGACCTTAGCAGTGGCATAAACTGTA 2793139 28 100.0 32 ............................ TAAGCAGAAAAGGGGATAAATACCCCCACCAC 2793079 28 100.0 32 ............................ ATTTGCACAGGGCTTGGCGGTGGTTTTAAAAA 2793019 28 100.0 32 ............................ ACCTGAGGTTAATCCCATTGGGACAGAGAATC 2792959 28 100.0 32 ............................ CACAATGTCAAGCCCATTCATAAAGAGCTAGT 2792899 28 100.0 32 ............................ TCAAGACAAAATCCCTTTTTGGATAGATTGGC 2792839 28 100.0 34 ............................ CAAAACCCGTACCCGACGACCAACCATTACCAGA 2792777 28 96.4 0 ..................A......... | ========== ====== ====== ====== ============================ ================================== ================== 25 28 99.9 32 ATTCCACATCGCATAGATGACTTAGAAA # Left flank : TCAAAGCGATAGCGGACGTTGGCGAGCGAGCGACAGGCTATGTGGTGGTGGAGCGTTATCGCCATTATGACTTGGGCAAGCAGGTGGAGCGGTTTGCTGATTTTAAAAATTTGACAGTGGAGCAGGCGCTGGAGCATTGCCTTGCCCACAAGAAAAAAGCCAAAAATTACCCCTTTGTCCGCCTAAAAAGTGAGACCAACCAACGGCAGTATCATCTGCATATCCGCCAATATACGGTCGCCAAGCCACAAACGGGGGTGTTTAACACCTATGGCATTACCAACATTAATGACGAGACCAAGGCAAGCGTTCCGCATTGGTGATTGGGGTTGGTTGTGCTAAAATAAAGGGCATGATACAGGTTTACACCCTTTATTTTTTGACTATTTAAAAACTTGATAAAAATCAAACATTTATAAACAGGCGAAAAAACATTGGGTAAACGCCCAAAATATGGCTGTAAGCCTTGATATAAGTGGGTTTTATGTTGTATAATTCTT # Right flank : TTTGGTAGTAGCCTAAAAAGTATGCCAAACTAGTTTTCCGTTCGCCCTGAGCCTGCCTGCGGGTAGGAAAACCGTTAGGTTTCCCAAGATCGCCACGAACTGTTTTCTTTGTAGCATACTTTTTGAACCAGAGCCTTATTTTTTACCTCTTAAACATACAATCCAACCGCAACAAATGAAAAGATGTTCATCATTACTGATAATATTGTTACCACACAAATAAAAAAGTAACCATGAACACCTACAAACATCTTAGCATAAATGAACGAGAAAAGATAATGTTAATGCTTGCACAAGGCATAAAGCCCAGTAAAATCGCAAGCATGTTAGGACGTTCTTGCTCAACAATTTCAAGAGAAATATCAAGAAATTGTAAGTTAAACCAAGCGTATAGCGCTAACACGGCTCAGATAAACTATGATAAAAAACGTCAAGCATGCAAACTTAAGTTTAAATTAGATGACAAAGAGTTATATCAGTTGGTGCATGATAAGTTTATG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCACATCGCATAGATGACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //