Array 1 38607-39619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXK010000023.1 Clostridioides difficile strain HU41 NODE_23_length_49183_cov_23.0962, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 38607 29 100.0 38 ............................. TTACTCCATAACTATTTTGTAACTCAACGTCTTTCAAA 38674 29 100.0 37 ............................. TAAGTTTTTCATTTTTTTCAAATCTGACAACATCAGA 38740 29 100.0 36 ............................. AAAATTTACTTCTAAAATGTATCTTTGGACTGAAAG 38805 29 100.0 37 ............................. TATTTAGAAGATGATTTGTTTCAAGAGGGTGCGATAG 38871 29 100.0 37 ............................. ACAATACCCCCCTATTGCAATGCTTCATCAGCTGATA 38937 29 100.0 36 ............................. GGTAGTACCTACATTATTTATTTTTACAGAAACAGA 39002 29 100.0 36 ............................. GCGGAAATAGAAAAGATGTACCCCGATTATGAGTTA 39067 29 100.0 37 ............................. GCGTTTTTATATGCATCTGAATAACTATTCAATAAAG 39133 29 100.0 37 ............................. GTTTGTTCATACAAGCCTATCGCTCGATTTCTTCTAT 39199 29 100.0 38 ............................. GGCTTAAATGTCACCTTTACAGTCAAAGACCTTGTTGC 39266 29 100.0 37 ............................. AAGATACTTGCTATTTCTAATGCTTCACTGTATTTTA 39332 29 100.0 36 ............................. TGCACCTATTACAGCTTTTCTGAACGCTTCATTCTT 39397 29 100.0 36 ............................. AAGAAATAACTTATATTAAAGACAACTTTGACGTGG 39462 29 100.0 33 ............................. GTACAGGCTTTAGAAATTGGTATTAGATATAAT 39524 29 100.0 37 ............................. TTTAATTCGTCATCGCTAAAAGAGTCAACTTTGGCTA 39590 29 82.8 0 ...........G.......A.C..A...A | C [39609] ========== ====== ====== ====== ============================= ====================================== ================== 16 29 98.9 37 GTTTTATAATGACTATGTAGTGTGTAAAC # Left flank : TTATACTTCTCAAACATGTTCAGAATGTGGTCATGTAGACAAAGAAAACAGGGAGACACAGGCTAAATTTAAATGTTTGGAATGTGGATTTGAAGCTAATGCAGATTATAATGCTGCTAGAAATATAGGAAAAAGTGATAAATTTGTAAAATAAAATACAAGAATATATGTACGGGTGATTTAGTGTAGATGGTAACATCTCCAAGAGAAATCTTGCATCCGAAGGGTGAGGGTATAGATAAAACGCATAAGGTAGTATGCCAAATATGTGCTATAACCACTCACTAAGCCGAAAAAACCTTAGTTTATGATGGCAACTAAGCACACTATTATATATAAAATGCAGTGAGCGAACTTTTACATTTACATATTCTAAGCAGTTGAAATTACTATGGTGTAGCGATTATTTTTAAAACATCAAAAAACACTACTGGTCGCTCAATGCAATATTTTGTAAATTACATAGATTAAAGTATTGCAATTGCTGTATTTCATTTAGG # Right flank : AATCTTATAGTAATTAAAAATAAATGCTTATAAATAACACTTACTTAAATAGTATGTGTTTTTTTATACAAAAAATGAAAGAAGGTGAATATATGGTAAGAAAACTGCGGTGTAGTATTTAAAAACATTTTAGAAAGGAAGTGATAACTTGTTAATAGACATATACTTAAAAAATGAAAAAGAAAAAATAGATTTCCATTTTCCTGTTAATCCACAAGATTCTTTATCTATAAAAAAAGAAAAAAGATTTGAAACTGTTGATATAGTAAATCTAGGTGAATTTGACATTAAAAAAGAAGGGGAGAAGATAAGAGAAATATCATTCAAGACTTTCTTACCCAATTTATATGATGCTTCTTATTGTAGATACAGTGAGTTAAAAAATCCAATTGAAATAGTTGCAATGCTTGAAAAATGGGTAGACCAAACCGAACCTCTAAGACTTATAATGACTGGTTTTGGTTACAATGGATTAGTTACAATATCTAGTTTTAGCAATA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATAATGACTATGTAGTGTGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 7640-7089 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXK010000116.1 Clostridioides difficile strain HU41 NODE_116_length_8559_cov_18.1767, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 7639 29 100.0 36 ............................. TTAAAAGTCCAACCAGTTTGATTAGTACCAGGGATA 7574 29 100.0 37 ............................. GTATCAATTAGTATTTTTTTTGATTTTTTCACTTTAC 7508 29 100.0 36 ............................. ACGATTGATTTAATTACTATCAATTCACTTATAGCG 7443 29 100.0 36 ............................. GGTAAGGACATTTTTTTATAAACTCTCTAATACTTT 7378 29 100.0 36 ............................. CAACGATTTTGTTAAATAGCTCTATATATAAACTTG 7313 29 96.6 38 ...............C............. ACAAGTGAATGGTCAATAGATATAATAAATTTTTTAGA 7246 29 100.0 36 ............................. TGGATTTAGATTATATGTTTGAACTTAATTTAAGAG 7181 29 96.6 36 .................C........... TTTTGTGATGATAGAAGTGGACATATGTACTTGACT 7116 28 89.7 0 ....................-..T....A | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 98.1 36 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TCTAATTCATTTTTTAATATTCCTTGTAATTTTAATTTGCTTTGTTTTAGCTTTTTTCTTTTAATAAACTTATTAATTCATCAAGTGCTGATAATGTTTTCTTTGATTTTGATTTTTTATTATATCTCTTCTGTTTTTAATTTTTTCTTATGAAGGCTGACTTAGTATCCATAAGAGCACCATCCTTTAAGTTAGTTTGAATTAATTACTTAATTATATTTTATAACAAGTGAAAAAAATCTTCAGAGTTTATTAAAAAAATGTTTATTTTTATTAAATTATAAATTGGTACAAATATTCAAAAATAATCTATTTATGATATAATAAAAATATAAGAGTTTTGCAGCGTGCGATTTTTCTATTTAAGTATAGTTTAACAGTTGAAACATAAGGCATTGAGAGTGTATGATAAGTGTTATCAATTGCACGACTATCCGCGCACTGCAAATTTAAGAGAGTTGTATATATGTAAGTATTAGAAATGCTAAGTTTATTTTGGG # Right flank : TTAAAAATACTAAAAACACTTGCTTAAATAGTAGGTGTTTTTCAAATTAAAAGGATGTAATAATATTATAAAAAACAATATATAGGAAAAATATGTAAATACATATGTTATAATATTTTTAGCAAGAAGATGGAATCTACAATTTATAGAGTGGAGTTCATGTATCAAAAAATTATCCTCACAACATTGATAAGGGAGGTGAATATAGTAAGTACTTACTCAAAAGGTAGGTATTTTTTTATACAAAAAATCAAAGGAACTGAATTTATGGTAAGAAAACTGCGATGTAGTATTCAAAAATATTTTAGAAAGGAAGTGATAATTTGAGAATAGACATATACCTAAAAAGTGAAAAAGAAAAAATAGATTTCCATTTTCCAGTTAATCCACAAGATTCTTTATCTATTAAAAAAGAAAAAAGATTTGAAACTGTTGATATAGTGAATTTAGGTGAATTTGACATTAAAAAATAAGGGGAGAAGATAAGAGAAGAGAAGTCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 27148-25940 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXK010000011.1 Clostridioides difficile strain HU41 NODE_11_length_76288_cov_28.0698, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 27147 29 100.0 36 ............................. GATGTTGATTGTCCTAATTCTAATGCACTTTGTTTT 27082 29 100.0 37 ............................. AAATATACTAACAATAATTTTTATTTTTTTCTTTTAA 27016 29 100.0 36 ............................. GTTTCAACATCAATATTTTTAACACTATCACTCTTA 26951 29 100.0 37 ............................. CCAGGTAAAAATGGAGGGATAAAAGTGGAAAATGTTA 26885 29 100.0 37 ............................. ACGATATTGCTTATACTAAAACTTTTTACTAAAAGAA 26819 29 100.0 37 ............................. ACGGTTTGCACTTGGTCAAACGTCCTCCCACTATAAA 26753 29 100.0 36 ............................. TCAAAAGAGGCTTAGCCTCGTGGTCGAGGAATACTA 26688 29 100.0 36 ............................. ACTTCAAGTTGTAAAAATTCGCTATCTAAGTCAATC 26623 29 100.0 36 ............................. ATCTATACAATTTACACATTCCATTTTTTATGCCCC 26558 29 100.0 36 ............................. TGAGTTTTCTATATTCAGCATTATTAGTAAAATTAT 26493 29 100.0 36 ............................. TCGCCTACATATTCTCCTTCAAAAATATTTATATCA 26428 29 100.0 36 ............................. ATTGTCCAAGAACTACTATCAACACTATAAAACTTA 26363 29 100.0 37 ............................. GAAGATGTTAGAAATTTTGTAAATAGCCTAATAAAAA 26297 29 100.0 37 ............................. GTGTATGTTAATTCTTGATTATTCGAGTCTGTACCTG 26231 29 100.0 37 ............................. TTCGAATTTCTTCTAAACATGCTAGAATCTGCATCAA 26165 29 93.1 37 .............C..T............ ACGCCAAACAGCTTATCAATGTAGTTATATGCAACAA 26099 29 100.0 36 ............................. TCGTCTACCCATTCTCCACCACCTTCTCCATCACTA 26034 29 100.0 37 ............................. GTTATTGCCCAACTTGGATTATTACCTTTATAGTTTA 25968 29 89.7 0 ..........T............GC.... | ========== ====== ====== ====== ============================= ===================================== ================== 19 29 99.1 37 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : TAAATTAAACTATATTAGTTATAAAATGCCATGCTTATATTATGTGTTTGAATTAAACTAAATTAGTTGAGATATTAAGAATTAAAATGTTAATACAAGCAAGTTATATTAAAATATATAAAAATCATATGATAATATTTATATATTTTAGATAATGAAAAAACTAATTAAGGACATAGACATGTTTTTAATAGTTTGTATTTTGAGTATAAAAGATATTGATTGTTTAATTAATATCTTTTTATATTGTTATCTTATATCAAAAAGTATGTAATGATTCTATGTTAGATATGTTTTTAAATTTATTATGTCTTAAAAATAATATTTAGTAGTTTTGGTTTTGCAGTGAGCGAAAAAATTACATAAGTGGCTGTAAATTAGTGATGGCAAAGATTACAACTGTATTTTTGATTATACCAAAAAACACTACTTAGGGCTCACTGCAAATTATTCATTTTAATAATACTATAAGTATTGGAATTACTGTAGTTTTATTTGGG # Right flank : AAATCAGATATATCAGAAAGTATATATAAAATTATGTATAAACTATATTGTTATGAGTACAGGTAATATTTACCCATTTATTAAAAAACTTAGCTAAGAATTTGATTTATATTATTGAATTAGCAAGAATTTTGGAAAATAGAAATATATACCCCAACGATACCCCAATTACAAAAATAAACAATAAAAACAACCAAAAAAATTGCTCCAACATCATAACTAAATAGCTATATACCTACACTTGAAAAAACCAACAAAACAATCAAATAACCACTTATAGACTCCCCTCGTCTCCACCATTAAAATCTAAGAAAAATATTAGCACTTTGCTAATATTTTTTTTGTGAAAACTAATCATAACCTATATAATTAACTTATAAAACACACACAAAGAGGTAAAACTATATGGCTAAAATTGATAATATGATGTCCATATTATGGATGCTAAACTCAGATAAAAAAATAACCGCAAAACAAATATCTGAAAAACTAGAAATAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 24108-25056 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXK010000035.1 Clostridioides difficile strain HU41 NODE_35_length_36133_cov_19.0951, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 24108 29 100.0 38 ............................. ACTATCTAGCCATAGTAAGTAACAGTAATCTTTTACTA 24175 29 100.0 37 ............................. TGGTATTTTTTGTTTCATCGAATTTATTTCCAATATC 24241 29 100.0 37 ............................. ATTAACAATAAAATAATTTTCAAACAATAAAATTACC 24307 29 100.0 36 ............................. ACGAAAATAAAAGAGCTTACTAAAAATGCTATTATG 24372 29 100.0 36 ............................. CGGCAAACTAAAAGGAAATTTAGTATTAATATTAGT 24437 29 100.0 36 ............................. CTACCCCTCTTAACGAAATTAGATTATAACTTGATG 24502 29 100.0 38 ............................. AGTCTTGGCTATGACAAGTTTAGCGAAACAGATAAAAA 24569 29 100.0 37 ............................. ATATATATATAAAATTTAGTAATATCAGCAAAAGCAG 24635 29 100.0 37 ............................. TTATATTTGAATCTAAACTAGTTGTATCTATTAAAAA 24701 29 100.0 36 ............................. TTTAGAAACACGCGTATAATAGTATTACCTAGTATA 24766 29 100.0 37 ............................. GAAGATAAATTTTTCTTCATACTTCTTCTTAGTAATC 24832 29 100.0 36 ............................. ACTGAAAGTACCTTTAATACATATGATGATTTTGAA 24897 29 100.0 37 ............................. TAAAATTTGTTAAACCAAAAAACATCAATTTGATTAA 24963 29 100.0 36 ............................. TTCAGCTTCTCATGAGTGTAATCATATCCAAATAAC 25028 29 82.8 0 ................A.CA...C....T | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 98.9 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATTTTATCAATGATGAAAAGTATAAAGTTTTAAAGGCATGGTGGTAAAGTATGTTTGTTATTGTTACTTATGATGTTGTTGAAGCAAGGTCATTAAACAGGGTTAGAAAAACACTTAAAAAATATCTAACTTGGACTCAGAATTCTGTTTTTGAAGGAGATATTACTGATGGGAAGTTACATAAATGTATTTCTGAAATAGAAAAGATTATTGATAATAGCGAAGATTCGATTTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTGTGCTAAAATAAGGCTTAACAGTTGGAATATAAGAGATTGAAGGGTACTGATAATTGTTATTAATTGCACTATTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATGATTGCGTGAGTGTAGCATTTTCAGGCTATTCAATTGCATCTATTCTGGG # Right flank : TGAAGTAAACTTATACTATAAATAAAAATCAACATAAAAATGGGGTGAAATAAAATTTATGATAAGAAAATCAAATGATAAAGATATAAACAAAATCATGGAAATATGGAAAGAAAGCACAATCAAAGCACATGACTTTATAAATAAAGAATACTGGGAAAATAACTATAACACTGTCAAAAATGAATATATACCTATATCAGATACATTTGTATATGAGGATGGTCAAGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTCATAGGAGCCTTATTTATAAATTCAAACTATCAAAACCTAGGTATAGGAAGTAAACTTTTAGACTATGCAACTAAAGAATACAAGAATCTAAGTCTAGCAGTATACAAAGACAATAAAAAGGCAGTTGTATTTTACAATAAAAAAGGATTTAATATAGTAAAAGAGCAAATAAATGAAGATTCAGGATTTAAAGAGTACATCATGGAATATAGTAAATAACATTAATATATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //