Array 1 3119884-3119185 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009199.1 Mycobacterium tuberculosis 1821ADB36 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3119883 36 100.0 35 .................................... GCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGT 3119812 36 100.0 40 .................................... CCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGG 3119736 36 100.0 38 .................................... TAGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCT 3119662 36 100.0 35 .................................... CTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTA 3119591 36 100.0 36 .................................... CCTCATGGTGGGACATGGACGAGCGCGACTATCGGG 3119519 36 97.2 37 ......G............................. TGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCA 3119446 36 100.0 40 .................................... GCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCAT 3119370 36 97.2 40 ...C................................ ACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCA 3119294 36 97.2 38 ..................A................. TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA 3119220 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 10 36 99.2 38 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : CAAAACCCCGAGAGGGGACGGAAACCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACATTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAG # Right flank : TACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 3123577-3121938 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009199.1 Mycobacterium tuberculosis 1821ADB36 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 3123576 36 100.0 38 .................................... TTAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAC 3123502 36 100.0 41 .................................... NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGT 3123425 36 100.0 36 .................................... TTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNACCAA 3123353 36 100.0 34 .................................... TCGAAAGCNNNNNNNNNNNNNNNNNNNNNNTCTA 3123283 36 100.0 39 .................................... AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCAG 3123208 36 100.0 35 .................................... NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 3123137 36 100.0 37 .................................... ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCT 3123064 36 100.0 38 .................................... CTGAGGANNNNNNNNNNNNNNNNNNNNNNNNNNCGCTG 3122990 36 100.0 37 .................................... GCGTGAAACCGNNNNNNNNNNNNNNNNNNNNNCCTAG 3122917 36 100.0 35 .................................... ACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAT 3122846 36 100.0 37 .................................... NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGG 3122773 36 100.0 41 .................................... NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 3122696 36 100.0 40 .................................... ATGGGANNNNNNNNNNNNNNNNNNNNNNATGCTGTCCGAA 3122620 36 100.0 36 .................................... NNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCACGM 3122548 36 100.0 41 .................................... TTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCGG 3122471 36 100.0 25 .................................... CTTGAATAACNNNNNNNNNNNNNNN Deletion [3122411] 3122410 36 80.6 36 NNNNNNN............................. ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCA 3122338 36 100.0 37 .................................... ACGGAAACNNNNNNNNNNNNNNNNNNNNNNNNCTCCG 3122265 36 86.1 36 ...............................NNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAG 3122193 36 100.0 36 .................................... TGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 3122121 36 100.0 37 .................................... TTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA 3122048 36 100.0 39 .................................... CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT 3121973 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 23 36 98.6 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGA # Right flank : CCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACCCTGAACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGAGGAGGTACCCGCCGGAGCTGCGTGAGCGGGCGGTGCGGATGGTCGCAGAGATCCGCGGTCAGCACGATTCGGAGTGGGCAGCGATCAGTGAGGTCGCCCGTCTACTTGGTGTTGGCTGCGCGGAGACGGTGCGTAAGTGGGTGCGCCAGGCGCAGGTCGATGCCGGCGCACGGCCCGGGACCACGACCGAAGAATCCGCTGAGCTGAAGCGCTTGCGGCGGGACAACGCCGAATTGCGAAGGGCGAACGCGATTTTAAAGACCGCGTCGGCTTTCTTCGCGGCCGAGCTCGACCGGCCAGCACGCTAATTACCCGGTTCATCGCCGATCATCAGGGCCACCGCGAGGGCCCCGATGGTTTGCGGTGGGGTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [10.0-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //