Array 1 4664-3113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAILN010000033.1 [Ruminococcus] gnavus strain MSK.5.19 NODE_33_length_24851_cov_267.13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 4663 32 100.0 33 ................................ TGTCGCATCTGCTCTATGTAAATGTTTGCGGCG 4598 32 100.0 35 ................................ TTTCATTTTGCTCCTCCTTAATTTGACTTCAACAA 4531 32 100.0 33 ................................ GCTTTGTAAATATCCATCAGGATCTTCATCTCG 4466 32 100.0 35 ................................ TTATCCTGGTATCCACCTAACGAGGTAAACGTCTC 4399 32 100.0 34 ................................ GGATACCGCACTGTCGGTATCGCAGAATGCTACG 4333 32 100.0 34 ................................ ATTGACGGGAATCTGACTATAGAAAACAAGTGTT 4267 32 100.0 35 ................................ TGCTGTCTTTCCCATGATCTCATCAATGAGTCCAT 4200 32 100.0 34 ................................ GTGGCAACTGAAAATGGAATCCGGCGTGGATATT 4134 32 100.0 34 ................................ TCAGTTGTGTTGCATTGCCCGAGCAATACATCCA 4068 32 100.0 34 ................................ TATTCTCATAGCTTTACACAGATGAGCCTATGTG 4002 32 100.0 35 ................................ GTTCTGGAAAGTCTTTTGTAGACACTGCTTATATC 3935 32 100.0 34 ................................ CACTCTCAGACAGCGAATGATATCGGTCTTCCAT 3869 32 100.0 34 ................................ CAACATGACGGATATCCAAAATGCTTATCAGGGA 3803 32 100.0 33 ................................ ATGGTTGTGAGTGATATCGTAGCTTACCGGAAC 3738 32 100.0 34 ................................ TGCATAATGATAGAAAGCATATGCATACCCATAT 3672 32 100.0 34 ................................ ACTGATGAGACAGATACTATTATCACCGGAGTGT 3606 32 100.0 34 ................................ AACGTAAAATACAAACTAATCAAAAAGGAGAATA 3540 32 100.0 36 ................................ TTTCTCTGCTCCGCCGCCACAGATTAAAGCAAAAAT 3472 32 100.0 35 ................................ TGGCTTACCCTATGCCTATACGTGCAAATATGATC 3405 32 100.0 33 ................................ GTGCATCTGCTTACAAAAGTCTACCGCTTCTTC 3340 32 100.0 34 ................................ GCGATATCATCTGCCATGCTACTGCCGCCGGAAT 3274 32 96.9 33 ..............T................. TATGCTCATTTGCCCTGGTATGTTTTTGCCTTC 3209 32 100.0 33 ................................ CAGGCGGGACTTTCGGATAATTGGATCCATTAA 3144 31 90.6 0 ........................-.G.T... | T [3115] ========== ====== ====== ====== ================================ ==================================== ================== 24 32 99.5 34 GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT # Left flank : ATCCGGTATTTCTCTGGAAATGAGGCGAAAATGGGATGTTAGTGTTGATTACATATGATGTGAACACAGAAACAGCGGCTGGAAAGAGGAGATTGCGCCAAGTGGCAAAACAGTGTGTAAATTATGGGAGAAGAGTGCAAAATTCTGTATTCGAATGTATCTTAGATAATGCACAGTGTGTTATGCTTAAGGCAAAACTGACAGATATCATCGATGAAGAAGTTGATAGTTTGAGATTTTATTACTTGGGAAATCAATATAAAACAAAAGTCGAACATGTTGGTGTAGACAGAGGAATTTCGGCGGATGGAATTCTTATTATGTAACTGGGGTGCGGATGATAAGCAAACATAAAAATGCTGGGAGATTCGCACCAAAAAAATGCACAAAAATTAGTTGAAGAGGTGAAAGTTAGAGAAATATGATGAGGAAAAGAGAATGATATTGGTAGAATTGAGTAATATTAAAGAATATAAAGCCTAAAATTAGGCAAAATTGCT # Right flank : GTGGTGGACGGGCTGCCGGAAGATGCCGATGATTTCCGGTATCCGGGAGATGCGATCGAACCGGAAATACAATCGGAGTTGGAACGTGCATTAAGCGGGGAAACGGTATTGCCGGAGAAGATTCTGGATACAGACTGGGGAAATATTTTTATTGCTTATTATCCGTTGTATAATGAATCAGGAGAAGTCATCGGTGCACTTGGAATAGAAGTTGCGGCAGATATAGAAGCCGAGGCGGTACATGACAAATCCATTATACAGAGACATGGCAAATACTGATTTTATGACAGAACTAAAGAACAGAAATTCTTATGAGACAGACCGGCAGAACCTGGATGCAAAGAAGAAATGGAATGGCCTGACAGTGGCAGTGATCGATGTGAACAATCTGAAGCTGGTAAATGATCGGCTGGGGCATGCTGTGGGTGATGATTGTATTGTGAATGCAGCACGGGTCCTGCAGAGTGTTGAATCTCAAAAAGTTACGGCGTATCGATACG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //