Array 1 605012-593991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSA010000001.1 Bifidobacterium choladohabitans strain W8116 NODE_1_length_985943_cov_300.670185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 605011 29 96.6 32 ............................T AACGATTGTAAAAACGACCGTGAGCTACAGTA 604950 29 96.6 32 ............................G GTGAGGGTATCATCAATCTTGGCGTGGCGCTG 604889 29 96.6 32 ............................T TTGTACCAAGCGAGATAGGATTGACAACACCA 604828 29 96.6 32 ............................T ATCCACAAGCACCGGCAGTACCTTATCGTCGT 604767 29 100.0 32 ............................. GCTGGTACCAAAGCCACACGATAGGTACAGTA 604706 29 96.6 32 ............................T TCAGCCCCGAAACACCGGTAGAGGTACAGATC 604645 29 96.6 32 ............................T TGAATTTGCCGACTATGCAGGATTTTCGGCTA 604584 29 100.0 32 ............................. TTTAGTTCATTGGCGGCAACCTTGGCCATACT 604523 29 100.0 32 ............................. TGCTTCCTACGTTTTGTTCGGTGTGCCACTGT 604462 29 100.0 32 ............................. TGGAACACACGGTACGTTACCAGAGCAGAGGG 604401 29 96.6 32 ............................T GATGCAATGGTATGGCACACGGGCTTACGGAT 604340 29 100.0 32 ............................. CGTCATGGCGCGGGGATGTGAACGCCGACAAT 604279 29 96.6 32 ............................T CTATTGCTCTTTGTGCCCTATTGTAGACATTT 604218 29 96.6 32 ............................T CACGAATAGCCGAAACTCCCTTGACAATCTCA 604157 29 96.6 32 ............................T GATCCATCAACTGTTGCATTAACATGCCCAAA 604096 29 100.0 32 ............................. AGTCAGTGCGCGAAATGCGCGCAATGATGGAT 604035 29 96.6 32 ............................T GCCCGATGATATGAGATCAAAGCCGCCTGTCG 603974 29 100.0 32 ............................. CGGCCATCACGTCCTTGGCGGGAGCGTCGGTC 603913 29 96.6 32 ............................T ATATTTGATATACTGACTAAAGTCACAGTCAA 603852 29 100.0 32 ............................. CGGCGGACAATGACGCGCTTATCGTTTCAGAG 603791 29 100.0 32 ............................. GCGATGGGCAGATCGATCGGCAGACCGAATTT 603730 29 96.6 32 ............................T CAAATTCAGTGAACTGGAATTTGAGATACCTA 603669 29 96.6 32 ............................T CCGGCGCTGAAAGTCCCGGCTTGCCTGATTGC 603608 29 96.6 32 ............................T CCCGGTGAGGGGGTTACTTATTAAGCGGGTAT 603547 29 100.0 32 ............................. GACTCGAGGTGTCCTGAACCTTATTGACGCGC 603486 29 100.0 32 ............................. TGTGCCGAGTTCTGCTTGTAGGTAACGGCATT 603425 29 96.6 32 ............................A TCGCCCTCTTCATATACACCTTGGCTTCTTCG 603364 29 96.6 32 ............................T GTCAGCGTGTGGCCTTGCGGGATGGATGGTTT 603303 29 100.0 32 ............................. AAGACCGACCCATCTGCCAATGACTGGTCTGA 603242 29 100.0 32 ............................. GCCTGGCCGATGGCATGGATGCCGTCCCGGAA 603181 29 100.0 32 ............................. GGGCCCTCGCGTCCAGGGTCGGCCAAGCCCCC 603120 29 100.0 32 ............................. CCGGCTGCAGATCGATCCAGCTGTCGTCCGGC 603059 29 100.0 32 ............................. AGATGGATGAGATCACCCATATGCAGGACCCG 602998 29 100.0 32 ............................. CCTGCCTGACCGGTGTGAGCCTTTCGTCGGAC 602937 29 96.6 32 ............................T TACTGCACCAGGCAGGTCCGATGTAAGGGGAG 602876 29 100.0 32 ............................. GGCAAGAGTTTCGTCGACTACGTGCTGCTGGC 602815 29 96.6 32 ............................T CTGCTCAGAAAACCGGTGGAGGACCTGTGGCA 602754 29 100.0 32 ............................. TCGCCAGCCGAACTGGCCAATTATCTTCGCCT 602693 29 96.6 32 ............................T CCTTATATTGTTTCAACCATACCCTGACCGTC 602632 29 100.0 32 ............................. ACCTCGGGCAGCTTAATGCCACCCTGCTCGGC 602571 29 96.6 32 ............................T CCGTATGACATGTGATTGATCCTTATCCCATA 602510 29 100.0 32 ............................. CCAATTCCCGAGTTTCTAGGAATTTTCAAAAT 602449 29 96.6 32 ............................T GGTGCAGAAGATAGCCCCACTGACCGGCAGTC 602388 29 100.0 32 ............................. TGGTGGACATGCCGCGCCATCATGCCTATCAG 602327 29 100.0 32 ............................. TGCGGGTCAGGGGCACGGCGACCCTGGGCCCG 602266 29 96.6 32 ............................G CGCGGAGGACTCCTCGTCCAGCCCTTTGCTGG 602205 29 96.6 32 ............................G TGTGGCCGTCCAGGGATTACCTCCTCGGCCGG 602144 29 96.6 32 ............................T CGATGTCAATGGTGCGGGTTCGGTCTCCAGGT 602083 29 100.0 32 ............................. CTCCTGCCGGTCAGATCCGTGATGGGACGTCG 602022 29 100.0 32 ............................. CAACCGTTGCATATCAGCCCCGCTCCGGCGGG 601961 29 96.6 32 ............................G GACCGTCGTTTGATGATGGCATCAGTGCGTTT 601900 29 96.6 32 ............................G TCCGCGGTATCCTCCTTGGCAGTGATGGGGCT 601839 29 100.0 32 ............................. GCCGCGCAGCTGACCGGTGGCGGTCCACCCCT 601778 29 96.6 32 ............................G GGCGACAAGGGCGACACCGGCCCGAAAGGCGA 601717 29 100.0 32 ............................. TGTTCGAACGGCGAATTCCAGTTGTAGGTATA 601656 29 100.0 32 ............................. GCCTCGCAGCTGACCCGTGGCGGTCCAGCCTT 601595 29 96.6 32 ............................G CAGACGGAACAAACTGGAACGGAAATGAGACA 601534 29 96.6 32 ............................T GGGTGATTTGTTGTATTTCCAAGTGAAAGCGG 601473 29 96.6 32 ............................G GACCTACACGGACGAGGACGTGGAGAACACCA 601412 29 96.6 32 ............................T TCGGGCTCGTCATCGCCTGATCCTCCCCTGTC 601351 29 100.0 32 ............................. TCCTCGTTTCTGGTCTCTCCGACGATGATCCT 601290 29 100.0 32 ............................. CGATCTGTATGCCGCCGCATATCGTACGGCCT 601229 29 100.0 32 ............................. TGGCCATCTATCGGCTTTGCGATCCATGGCAC 601168 29 100.0 32 ............................. CAGCTTGCTTAGTAGATGGTCGTGCTATGTCC 601107 29 100.0 32 ............................. AGCCATGAGACCGTTTGCTCAGGCACAGCCAC 601046 29 96.6 32 ............................T ATCCGTATCCGCGGCCTGCACATTGATGCCGG 600985 29 96.6 32 ............................T TTGAACAAGGATGAGGCTGATAAGCTCTCATC 600924 29 96.6 32 ............................T TATTTTCTCCATCACAAGGAGGCAATCTCGCT 600863 29 100.0 32 ............................. GACACGCCGGACGTGAAAACAGCAGAGGACAC 600802 29 96.6 32 ............................T GTGAGCCGTGAACTCAACCGGTTCCAAGCCTT 600741 29 96.6 32 ............................T ACGTGGGGGAGAACAATCTTGAAATACATGAG 600680 29 100.0 33 ............................. ATGGCTGCGGTCTCGCTCATGCGGTCCGGGCTG 600618 29 100.0 32 ............................. TGCTGCATTTCGTTGACGGCCACCTGGTTGGG 600557 29 96.6 32 ............................G GTCTGCGTGCTGCCGCCGGAGAGCATGAGCGC 600496 29 100.0 32 ............................. TGGCGGGAGGTGCTCGCAGGATACGATCGGCC 600435 29 96.6 32 ............................T TCCCAAAGCGTCCATCATGGCCCGCATTTCCC 600374 29 96.6 33 ............................T ACTGCTCCCAAGCAACAAGTCAATATCTGATCT 600312 29 96.6 32 ............................G TAGTTGAATGGGTCAAGTCAAGAATCGGCAAA 600251 29 100.0 32 ............................. TGCTCGACGTCGCCTTTCAGATTGTCGGTCAG 600190 29 100.0 32 ............................. CGCTCCTACACGCCCCAATTCGAGCAGTTCTG 600129 29 96.6 32 ............................T CGATCTTGGTGATGTCACCCAGATTCGGCACC 600068 29 96.6 32 ............................T GAGTTTTACGACGCGCTGATTAATCACATTGC 600007 29 100.0 32 ............................. ATGACATCATCGCGTGCAAACTCAGGGCAGAC 599946 29 96.6 32 ............................T GCTCGCTCCTGGTCAAGAGGAAAACGTCCTCA 599885 29 82.8 27 ..................AT....GA..A AGGGCACGCGGCCTACGCTCCCCGACC CC [599861] 599827 29 96.6 32 ............................T CCAGGATTTGTGACAAATTTGGACTTCAGCCC 599766 29 100.0 32 ............................. TGATGGACAAAGCCGGCCTGGACGACATCCAG 599705 29 96.6 32 ............................T TTCGAGCCGTCCAAGATCATCACGCCGACCAC 599644 29 96.6 32 ............................T ATCCACTTCACAGTTGTCGGCCACATCATAGT 599583 29 100.0 32 ............................. TCGGCTGGGGTCATGCCCGGGCGGCCTCGTGG 599522 29 100.0 32 ............................. ATGGCGCGCATACCCCTGACCACCAGGATACG 599461 29 96.6 32 ............................T GCGACCTATGGCGCCAACAATGATACGGCTTA 599400 29 96.6 32 ............................G CCCAAGGTCCTATTCCCCGGCTGCCGCAGACC 599339 29 96.6 32 ............................T TGTTGGTTTGCGCTGTGCCTGTTCCGTCTCCG 599278 29 100.0 32 ............................. TGCCGCGCCCTGGCCGTATGCATGATATCGAC 599217 29 96.6 33 ............................T CTGACCGACGGGCGTATCCCCGGTCGGGATCTG 599155 29 96.6 32 ............................T TCGGCGGTGTCGGTCTTCCAGATGCGAGGGCT 599094 29 100.0 32 ............................. GCGCTCCATAGGGTCAAGATGCGCACCACGCC 599033 29 96.6 32 ............................G GTTTAGGAACGCTTTCCCGGCATGGTCTGATC 598972 29 100.0 32 ............................. CGCTGGCCGGCCTTCCCTACCCTGCTCGAAGA 598911 29 96.6 32 ............................T GTATGCGAGAATGCCCGACATCCGGCATCGGA 598850 29 96.6 32 ............................T GTGCTTCTGCTTCATGACAGAGCGCATGTAGG 598789 29 96.6 32 ............................T ACGTGTGGCTTGTCGATTCCGTCTCAGCGACC 598728 29 96.6 32 ............................T TGGTAAGTCAACCCGGATTGCGACCGCGTGGT 598667 29 96.6 32 ............................T GCCGGCAGAATCGTCCCAACCACCCAGTCCAC 598606 29 100.0 32 ............................. GTGACTATAGACGCAAAGTCAAGGACGGCACG 598545 29 96.6 32 ............................A CGCACAATCGCCGCCAGCGGAGACAACGGGGA 598484 29 100.0 32 ............................. TCAGGCTCAGGATGTTGCGGAAGAGCCGCAGA 598423 29 100.0 32 ............................. TACTACCGGCCGTCCGATCTGGACGCGATAGT 598362 29 100.0 32 ............................. CAGGACGGCACCAGGACGGTCATCGGCCCCGA 598301 29 96.6 32 ............................T ATCCATGTCAACTATTGGTTTCTCCACATTAA 598240 29 100.0 32 ............................. TTTAAAATCTTTCAGGAATTCGTGACCAGTTC 598179 29 96.6 32 ............................T CAACTCCAGAGGCAACATAGTCAAGCACGTTA 598118 29 100.0 32 ............................. CCTGGACACGGCATGGAACTACAAAAGCCTGG 598057 29 100.0 32 ............................. CGTCGCAAGAAGCGGCGCCCGATTCGTCACCA 597996 29 100.0 32 ............................. AACGTCGACTGGGGATGGGTGCAATACGTCGA 597935 29 100.0 32 ............................. CAGCAGATCAGAGCAGATCTGGCCGCCATCAG 597874 29 96.6 32 ............................A TCCAAACAGTGCAAAAGGATACTCAAAATGCG 597813 29 100.0 32 ............................. ATGGTGACATGGTCTTCAAGCGACGATTCGGT 597752 29 96.6 32 ............................T GCCATGGCTGACATACTTGACTGTGACTTCAG 597691 29 96.6 32 ............................T TACGAAAGCCAGCGTAGAGATCGTACTGTCAA 597630 29 100.0 33 ............................. TCGCTCATCCAGGAGCGGTCGATCGGGGTTGGA 597568 29 96.6 32 ............................T GCACGGGAGTCAAAGGCATCAGGTTGGCCATG 597507 29 96.6 32 ............................T TCTTACCAAAAATTGACAAAGGCACAGAAATA 597446 29 96.6 32 ............................T CCGATTGCGTCTGAGGATTTTCAGAATGGAAA 597385 29 93.1 32 .................A..........G TACTGCGCGTCCAGTACCCGCCATGCCAGACC 597324 29 96.6 32 ............................T TCGTTTGCAAAAGTATGGTAATCCGGCGGTCA 597263 29 96.6 32 ............................G GACGCTGGCGAAATGGATACCTAACTCAATGG 597202 29 96.6 32 ............................T CCGGCGGTCATGCCGACCAATGTCACCCGTGG 597141 29 96.6 32 ............................T GACCGAAACCGTCACCGCCTTGCAGACCCGGC 597080 29 96.6 32 ............................T AGCAGCTGCGCGATATCCAAATACTTGCCGTA 597019 29 100.0 32 ............................. GGCAAACAGAATGATGATTACGGTCTGAATTA 596958 29 96.6 32 ............................T TTGCCGAGATGGCTGGCGACATGCTGCATGGG 596897 29 100.0 32 ............................. CGCCAGCCGGTATCACCTTTGACGCTGTTGAC 596836 29 96.6 32 ............................T TCGACTGGCGCGGGGCCTTTTGATATTAACTT 596775 29 96.6 32 .................A........... ATAGGCGTATCCACGACCACCGAATGGCAATA 596714 29 96.6 31 ............................A CCTTTGCTGGTAACAAGACAATCATGCTCCT T [596688] 596653 29 96.6 32 ............................T GCAGCCTGGCATCCGTGACGGTGCCGTCATTG 596592 29 100.0 32 ............................. AATTTCCGAATACTTCACAATACTTGATCGAC 596531 29 100.0 32 ............................. GCTTTTGCACCACCTGAACCTTGATAGGCTTT 596470 29 100.0 32 ............................. AATCAAACCACCTAATCATACTTTCTCACCAT 596409 29 96.6 32 ............................G CCTGGAGATCTACAAGCCGTCACTCGGCAAAT 596348 29 100.0 32 ............................. GCCAGCTACCAGGGGTGCTACAACGCCCAGAC 596287 29 100.0 32 ............................. GGGACCGGGACGATGATGCACGAGCAGATCAT 596226 29 96.6 32 ............................T GGAAGGATGACTGGTGGTCGCAGGCTCCGCTG 596165 29 96.6 32 ............................T GCACAGGCCTACGACAAGCACGGCAACCCGAG 596104 29 96.6 32 ............................T CGATCTCAGCGCCGAGCTTTACGGGCCTACCA 596043 29 96.6 32 ............................T TCTCTACACACAAGCCAAAGCTAAATACGGGT 595982 29 96.6 32 ............................T GAGTGACGAGTTTGATGTGATTCGTTTCAAGG 595921 29 96.6 32 ............................G GCGGCATTCCTGATGATTTTGACCATATCAGT 595860 29 96.6 32 .......A..................... CCTGTACCCGTCAAAAGCGTTGGTCAGGACGT 595799 29 96.6 32 ............................T CCACTTTCGGCAACGTCCAGACCATGGTTTTC 595738 29 100.0 32 ............................. CTGCGGGACGTGTGGGAGATCAACACTACGCC 595677 29 100.0 32 ............................. TATGCAAAAATACCGTATAAGGTGATCGGCTT 595616 29 100.0 32 ............................. GACAAACCCACTAGTTGATAAAGTATGCACAT 595555 29 96.6 32 ............................T ATCACCTGTGACTGGACCATGCGCAACTTTGA 595494 29 96.6 32 ............................G ACCGCCCGGAAGTGCGCAGGACCTGCCCCGGA 595433 29 96.6 32 ............................G CTGGGCGAGAACGAGGTCAGCCTCGACGCTGA 595372 29 100.0 32 ............................. AGGAACGGCGCCTATTTCCGTATCATCCATAC 595311 29 96.6 32 ............................G GCCAGGCCGGCAATCAAGGTCCGGAGCATGGT 595250 29 96.6 32 ............................T CCGGGTGACGTGTGGGACATCCCCAACCAGCC 595189 29 96.6 32 ...........................T. TGCTACGAGTTCTTCACCAAGCTGGCGTCCTC 595128 29 100.0 32 ............................. CATTTTCTTGATGGCGCGCAAGTTGTTATTAC 595067 29 96.6 32 ............................G TGGGCAAGAGCCCCTTCGGCGCAGCAGTGGCC 595006 29 100.0 32 ............................. CCCTCATAATCCCCATGTTCAGCGTTGAACTC 594945 29 100.0 32 ............................. GCGCCGTTGCCGACCCGGGCCATATGGATGAA 594884 29 96.6 32 ............................T CTCGCCGGTCTCCTTGTTCACCAGTTCATTGC 594823 29 96.6 31 ............................G TGCAAAACTGCATATGATGGAGACAGAGAAG 594763 29 100.0 32 ............................. ACGGGCAACGTCACCCTGCACAACGTCTACCT 594702 29 96.6 32 ............................G CAGGTGGAGCGGCGGGAGATCCATTACGCCTC 594641 29 96.6 32 ............................G CTGGGTGTCATACAGGAAGTGGACATCGACAA 594580 29 96.6 33 ............................T GAAAGCAACAACATAGCGGCACAGCAACAGGGG 594518 29 96.6 32 ............................A CGGATCAGCGTGTCAGCCGAATACGCGGTCAT 594457 29 100.0 32 ............................. GGCAATTTCCTACTGCCATTGGGTTCCGACAC 594396 29 100.0 32 ............................. GAAGGCCCCCAGCAGAGGCAGGAACGCGAGCC 594335 29 96.6 32 ............................T TCGATATCGGATGGAGCATGTCCACTGTTCTT 594274 29 100.0 32 ............................. CCCGACTGTGACCGTGTGGTCCAGGACTCGCT 594213 29 96.6 32 ............................T GTCCAGTATAGGGTTGAGAAGGATAATGTGAA 594152 29 93.1 32 .......T....................T GACTCGAAGGCTGCCAAGGCCGGAGCCGACCA 594091 29 89.7 43 .....T..T..G................. AAGCAGTGGACCATGGCTTCTTAAGAGTATACAAATACTATCG 594019 29 79.3 0 ...T....A.....T..A..A.....T.. | ========== ====== ====== ====== ============================= =========================================== ================== 181 29 97.8 32 GTGCTCCCCGCATCCGCGGGGATGATCCC # Left flank : GGCCACGTTACCGCTAGGGTCCGGGACCGGCTTTGGGAACGCATCACAGGGCAGATTCGGACCGGAAAGGCCATCATGGTCTATTCTGCCCGCAATGAGCAGCATCTGAGTTTCAAGGTGCATCGCTCAGATTGGAACCCAGTCGACTGTGAAGGATTGACTCTTATGGAGAGGCCTGCTGAAGGCGGCGGTGGCAGATCTGCGGGTGGTGGAAACCGATACCGCCGAACTGGTTGGAGCAATGCAAGCAAGTACAGACGAGCGGCAAAGTTCCGGCGCTCGCGATCCAGCTGAGTCCAAGCGGGGCTGCACTTTTCAGATGAGTTTTGCCGATGAGTGCCAGGTACTGATTACTGGGCCAGTGCATTGATAAGGATCTCAGTGTAGATGGTCTGAATCGCAGTGGCTGAGACGGGGAATGGAAGGGGCTCGAAATGCAAACTCATTAAAAATCAGAGATCTAGTCTATTGTATTGTTGGGATTGCAAGGATTTCTAAGT # Right flank : ACAGGCTATCTGATGGATGCCCTGCAGGTTCACAAATATGAGAGGAGACGAATGACTATGGATGAGGATTTCATGAGAAAAATGGCATCCAAGGATAAGGCCTGCACCACTACTCATGATCATATTCCTGATGACCGGATCAACAGTCACGCGTCATGCTATCCCATCACTGATGATATGGATGAGACCGAACGCCGGGTCTGGGATTCGCTGGATGATGAGGACAGGAAAATGATCCAGTCGGATCGGACATACTATGGGACGAACTATGGTGCTGGCTTCGGTGGCAATAGCAAGGTGAGTTTTTACGATGTGCTCGGCATCAGGCAGTTCGACTGACTCATTCCGGGGCTCCTATACGTTGTTGCAATCAGTAAAGGGATCGCTATAGGAGCGTCGGGGAGAATCCATGACCGCTTCATAGTTCGAACATGAGTGTTTGATTCTCCTTCAGCCCCAGCAATCGCATTGGTGTGCCCTGATTGAAGGTTTTGTCTGCC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATCCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //