Array 1 1353335-1352049 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP049037.1 Pseudohalocynthiibacter aestuariivivens strain RR4-35 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1353334	    36	  88.9	    30	.GA....T.C..........................	CTGCATCCTTTTGTAACGTTGGGTATGGCC	A [1353324]
   1353267	    36	 100.0	    30	....................................	AGATAGAGCGCATGCTCTTTGTTGCTGGCG	
   1353201	    36	 100.0	    30	....................................	TTACGTTGGTGGAGGCCAATCTGCCGGAGT	
   1353135	    36	 100.0	    30	....................................	GGTTCTACGATATTTCCATACATCTCCGTC	
   1353069	    36	 100.0	    30	....................................	CGCGGGCAGGGCGTTACTCCTGCTGCAAGA	
   1353003	    36	 100.0	    29	....................................	TGCCAGATGTAGTCGCGCGCGCGATCATC 	
   1352938	    36	 100.0	    30	....................................	TCCGGCGTTGGTAGCCGATCGCGAGCCGGG	
   1352872	    36	 100.0	    29	....................................	ACCAACCGCAAATCTCGTGTAACTACAAT 	
   1352807	    36	 100.0	    30	....................................	TGGTTCCGCTGTCGTTGCGACACCGAAGTG	
   1352741	    36	 100.0	    30	....................................	CATTTGCTGCATGGCCTGCTGCATCGGATC	
   1352675	    36	 100.0	    30	....................................	ACTCAGCGTCCGTTAGGGGGACCGTGGGCA	
   1352609	    36	 100.0	    29	....................................	TTCAAAACGAATGTTTGAGGTCAATGGTA 	
   1352544	    36	 100.0	    30	....................................	CGCTTTGCTTTTGATCCGTCCTCATCGTCG	
   1352478	    36	 100.0	    28	....................................	CCGATCAACAGGATTGCGCGGGCGCTGG  	
   1352414	    36	 100.0	    30	....................................	CTGACGATTCATCCCGCGTGCCCGACTTCG	
   1352348	    36	 100.0	    30	....................................	TAGGAGGCGCGTGGAACCCCACCTCTGTCC	
   1352282	    36	 100.0	    30	....................................	TCGTGGCGATTGCGTTCCTATGCTCACAGG	
   1352216	    36	 100.0	    30	....................................	TTTTGCCGCCAGCACGAGCCGGTTTGGCGG	
   1352150	    36	 100.0	    30	....................................	ACCCTCACCGGGCCAGCTTCCGTCTGTTGG	
   1352084	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        20	    36	  99.4	    30	GTTGCGGCTGGACCGCGAATTTTGAACAGCTACAAT	                              	       

# Left flank :   GAATGATCTGCCCGGAATTCCGGGTTCCGGTCAGTACGGGGGGCTGGATCGGCCAGCCCCTGTGCTGAAAGGACCAGAACATGGCGAGTACAACAACATCAAACAGGACCGCGAACGATGCGGCGGACCGAAAAGCGCTGGTGACGGGGAAAGCCTCAAAACAGCACACAACAAAGAAGCAACGTCTTCAGGCCCTGTTGCGTCGGAAAGGCGGCGCAAGCCTTGACGCGCTTCAGAAGGAATTCGGTTGGCAACCGCATACCGTTCGCGCCGCAATATCGGGCGTGCGTAAAGCCGGAAACACGGTTGTGTGCATCACGGGAAAATCCGGTTCAGTTTACAGGATTGTAGCCACAAAGGCAGCGCAATGAGCGCAGTGAAGTCGAAAACAGATCTCCCGGAGCTCCTCCGGGAGATTGCAGAGCTGAGCCGTACCGAATGCCAACTGGCCTGGATAAAAGCCTTCAGGAACGATCCACCTGAACCGCTCCGGAAAACCC
# Right flank :  AGTTCTCTGCCTAAAAGCCTGAAATTAAAGGGCTTAGTCAGAGGGCCGTTGTGGTTTTCCAGCGCGAATCGCATCAGAACATTACCAATTGCTTTGGATTCTCACGGGCCTTACGGCGGCCCTGATCCGAAAAATGAATAATATCACGATATTGGCGGTCGGTGAAGTTCAGGATCTGAATGTCGCCCATATCCGGCAAATGACGCTCGATTCGAATGATGCGCGTTGCAAAAGCCTCTTTGCCGTTCACGAAACGGGCATAGACAGAGAACTGGCTGCGCTCAAACCCTTCATCCAGCAAGAAATTGCGGAAGGTGCCAGCCGCCTTTCGCTGTTGCCTGGTGTCGGTTGGTAGATCAAACATCACAAGAATCCACATAAGACGATATCCTGACAAATGGGTTACGGTTGCGCTCATTTGCCCAACCCCGCCAAGGTCAACGCATCGGGTGGTTCTGGTAGCGCGAGGGTCAATTTCCCGGCCTCAAAGCTTTGACCAA

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGCGGCTGGACCGCGAATTTTGAACAGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [9,9] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTTGCGGCTGGACCGCGAATTTTGAACAGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-3.00,-5.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.87   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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