Array 1 431-2446 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAKC01000029.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22987, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 431 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 497 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 563 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 629 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 695 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 761 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 827 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 893 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 959 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 1025 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 1091 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 1157 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 1223 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 1289 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 1355 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 1421 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 1487 36 100.0 30 .................................... ACGAGTTTGGCTGCGCCCAAGTCTTTTGCG 1553 36 100.0 30 .................................... CCACTTTCGTGGGAATGACGGGATTTTAGG 1619 36 100.0 30 .................................... CCCATCAGCAGCACCCTGCCTTCAGACGGC 1685 36 100.0 30 .................................... GAAGGTGCGGCGGAAGGCGGCAGCAGCCAT 1751 36 100.0 30 .................................... CGCGTGTAGCTGTATTTGTCGATGGCGGCT 1817 36 100.0 30 .................................... CTTAAATCCCGTCATTCCCACGAAAGTGGG 1883 36 100.0 30 .................................... TCAAACCACGCGCGTTGCAGGTAGCCTGCA 1949 36 100.0 30 .................................... CCTCAAACCGTCCGCGCCGCCCCGATCCGC 2015 36 100.0 30 .................................... GCAACCACCTTGCGCCACGTCGGCAGGCAG 2081 36 100.0 30 .................................... CGGATAACGTGGGTAACGCCCATGTCGTAG 2147 36 100.0 30 .................................... CCGCCGTCGTGGTGGCAGCCGGCTATTTCA 2213 36 100.0 30 .................................... TATACATCCCGTCATTCCCACGAAAGTGGG 2279 36 100.0 30 .................................... AGCCAGATTTCGGAAAACCCTGCGGGCTTT 2345 36 100.0 30 .................................... TGCCGTCATCTGCAATAGCGGCGGTTTCCT 2411 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : CCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //