Array 1 345556-344871 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDSU01000018.1 Desulfurella amilsii strain TR1 opera_scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 345555 29 100.0 37 ............................. CGCAGAAGTTATAGAACTTGCAAAAGCATTAAATCAG 345489 29 100.0 38 ............................. CTTTTTGTCTTGGGTCGTGTATATCTTTATTTAAATTA 345422 29 100.0 36 ............................. CTTTGGTTATCAAATGCAGGAACAATCATATTTTGA 345357 29 100.0 36 ............................. TTAGAAAACATTGTTATAATAGTCATAAGTCAATGT 345292 29 100.0 36 ............................. CTTTGATTATCATATGCAGGCACTATCATGTTTTGA 345227 29 100.0 36 ............................. CTTTGATTATCATATGCAGGCACTATCATGTTTTGA 345162 29 100.0 37 ............................. GTATTTTTCTTATATTCATAGTAAATAAAATACAGTG 345096 29 100.0 38 ............................. ACTATTGCTGTTGCAATGGTGACAAGCTGTTTTACTAC 345029 29 100.0 36 ............................. CTGGTATGAAAAACATACCAATTGTTATGGTTGCCT 344964 29 100.0 36 ............................. AATGGGAATTACTTGAGCACAACAAACAAGTTTTTG 344899 29 89.7 0 ..........................GGA | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 99.1 37 GTTTTAGCTCCCAATTGTGGGATTTAAAG # Left flank : TTTCACCATAAAGGGTTGGGCAGAGTAGTAAGCTATAGAAAATTAATTAGGCTTGAGCTTTACAAGCTCATAAAACATCTTATGAATGAAGAAAAGTACCGAAGTTTAAATTTTTGGTGGTGAAGAATGTATATCATTGCGGTATATGATATTTGCACTATTGATTCAGCAGGCCAAACTAGATTGGTAAAAACGATGAAAACATTTAGGAAATATTTACACCATACTCAGAAATCTGTATTTGAAGGTGAGCTAAGTGAGTCAAAATTTAAATCTTTAATAATAGAAGTCAAAAAAAATATAAATGATAAAGAAGATTATTTGATTTTTTATAGAATAGACAATAAAAATAACTGCAAAAGAGAGTGTTTTGGGAAAGACAATGAGCGTATAAATACTATCATTTAAGCAAATCCCATATTTAAGATTCGCGAAGAAATCGCACGTTCTTTTATATAAAAATACTATACAAATAAGATTTATTTAGTATAATACAATGG # Right flank : AAAAGGGGACAGGCTACTTTATTCTATTTTCTATTTCTTTTTTGGTCTTCCATTTCGCTTTATGGTTGATTCCAAGCCAAATACTTTTTTGATTTTTGCTTGCCATTTTTTACCTATAAAAGTAGCCTGTCCCCTTTTTTCCCTAGCATTATAACTGCAGTGTAAAGAAGAGTTTAGCCTATATGATATTTTGGAATATGTGTTTTTAGTAGTGAGTGTTTACATTTTGTATTTGAATTTTATACTTGACATATGTCCATAAAGTAATATATTTCTTTATGGACATATGACCATAATTAAGGTTGTATAAAAAAGGAGGTGTCTTTGATGAAATTAGCAGTACCGACGAGTGACGGCAAAAATATATCCAAACATGTGGCGTTGAGTAAGTTTTTTTATATTTATGAAGATAGTAAACAAGTAGATAAAATTGAAAACCCTTTAGTTGAGAATTTAAAAGAATCATCAGCACCTTTACATACTCATGAAGGTAGGGGGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCTCCCAATTGTGGGATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 12867-13268 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDSU01000015.1 Desulfurella amilsii strain TR1 HybridContig11, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 12867 26 69.2 31 C.C.C......A.C.A.....AA... CTCAACTGCGGTTATTTTTCGGTCTAATGAC Deletion [12924] 12924 26 88.5 41 ...........T.A.A.......... ACTAACTTAAACCCCTTGCTACCACGCAACTGGCACCTCTA C [12927] 12992 26 100.0 39 .......................... GTTTGGTTTGCATTAAATATGGCTCTGTGGCCATCAAAA 13057 26 96.2 39 ...............C.......... ACAATGCAAATCATTCAGGAAAAATTTTACCGTGAACTA 13122 26 96.2 41 ...............C.......... ACTTGTAGGTGGGTCAATTCAGACGTTGTCTTAGACTTGCA 13189 26 100.0 26 .......................... ATAAAAAGATATATAATGTATTACTG Deletion [13241] 13241 26 92.3 0 ...........A..........C... | C,T [13244,13252] ========== ====== ====== ====== ========================== ========================================= ================== 7 26 91.8 36 TTTTAACTCCACATTTTGTAACTTAA # Left flank : TAATTTGCTTAACTATCAACTGCGAATCGCTTTTAAAAATAAAGCGGTTTGCAATAATATTGTTTTTTTGAATGTATTCTAGCGCTTTTAAAACAGCTTGATACTCTGCTAAATTGTTTGTGCCGAAACCAATATATTCTGAATATCTAAAAACCGTATTGTCATCAAACTGTATTACAAATGCAATTCCCATTGAGCCCGGATTGTCAATACAAGACCCGTCTGTATTAACTACCACAAAATCGTATTTCATTATTCTATCTTTTTTTGACGACAAACATCAATAATATAAGCAAAACTTAATCCTATAACACCGAATAACAGCAATCCAAAAATAACATCGGAAACAGTTTCTAAAATTTGCATCATATTTATATTATAGCACTTAAATTAAAAAAGTCAAATAAAGTTATAAAACCTAGTAAAAATAATGTTTAAATTTTAAAATATGCTTATTATAAAAAACAAATAACCTGATTTTTAAGGCAAGAAAAATTTTT # Right flank : AATTTTTCCAAGCCTTTCGCTTGTTTTAGGTATGCACCCTGTTTTTTTGCTTCTGACAATTTTTCCTGAATTCTTACTTGAATAGAATTTAGATACTCATTAAAAAACTTAAAAAAAGTCAACGGCATTTTAATTCTCCATTAAATCAATTTCTCTAACCCGCAGCCAAGTATTTCTTTGTGTTTTGTTTATATTAGTGCAGGCTTTTTTAAATGCGCTGTATTGCCCTGTTATATAAACCTTTTCTTTTGCCCTTGTGATAGCGGTATATATAAGCTTACTGCTAAGCATTATGTAAAAGCCGTTTATCATAGGTATAAAAACATAGTTAAACTGATTTCCCTGTGTTTTATGTATTGTCAACGCATAGCCTAAATCAACTATATTGTGGTAGTCATCAAAAGAATAAAGCGCAACAGTATTTTCTCCGTCTGGTTCAGGATAGATTACGCTAAACATCTCATTTTCTTCGTCAATATTTAAAACAAGCCCTAAATTGC # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAACTCCACATTTTGTAACTTAA # Alternate repeat : TTTTAACTCCACATTCTGTAACTTAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //