Array 1 408139-414908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSC010000002.1 Bifidobacterium polysaccharolyticum strain W6238G3 NODE_2_length_583181_cov_248.065677, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 408139 32 100.0 34 ................................ TGCCAAAAATGGATAACTGTTCAGGCTTAAAAGT 408205 32 100.0 35 ................................ ACCAGGCCGACGACTCTGGACATGTCACTATCCTT 408272 32 100.0 35 ................................ GTGGACGAAAACGAACATATGGAGGATGTGTTCAA 408339 32 100.0 35 ................................ GGCTCAGGTGAGGTATCAACTCAGTATGGTATCTG 408406 32 100.0 34 ................................ ACCATGAGCCAAGGCGACCCGACTACTCTCGACG 408472 32 100.0 35 ................................ CGAAAGTCACGTATTAGCCGGCCTGCAAAGGGCAT 408539 32 100.0 35 ................................ TTCGTGGAGCCTCTGGCGAAGACCGGGGCCAGCGA 408606 32 100.0 34 ................................ CAAGCTGTTTTGAGCGCGAGCCCGTGGGGCGTGG 408672 32 100.0 35 ................................ ATCTTCTGGTGTGATGGATCTCTTGCCGCTCTCGT 408739 32 100.0 35 ................................ ACGCCCTATCGGTATCCAAAAAACCGTGACAGTGG 408806 32 100.0 35 ................................ ATCCAGCACCAGGCTTCTGCCCGAATCGTCTGTGA 408873 32 100.0 33 ................................ GATAGCGTCGTCATAGCTGGGCCATCCTGACCA 408938 32 100.0 33 ................................ TGCTGGTTTATCCACAGTTTTGTCCACAGATGT 409003 32 100.0 35 ................................ TGGTGGGTAGTGGTGTCACCCCGTGCCCGTGAAAC 409070 32 100.0 35 ................................ AATGCTTTATCAGTGAGCGAGTACGTATCACGCTT 409137 32 100.0 34 ................................ CCGTCATGCTCACCGGGGCGACCCTCAAGCCGGA 409203 32 100.0 35 ................................ GCCTATCGTGGCGGGCTGGGACACGTAATACCCAC 409270 32 100.0 35 ................................ ATGTATTCCGACACCGATTCCATACACCTATCCGA 409337 32 100.0 34 ................................ ATGGCGTGCCTGCTGGCGCCGCTGGCCGTGTCGG 409403 32 100.0 35 ................................ GCAGTAGGAGACCCCGCTGACCGTGGTCACCACGC 409470 32 100.0 33 ................................ TGGGCCGTGTCGTTGGCGCCACCGGCAATGAGG 409535 32 100.0 33 ................................ ACATTGCGCGGTACACCGGCCAGACCTCGACAC 409600 32 100.0 35 ................................ CTCGACGTCCTGCGCGGCAACTGGTCCGGCGCTTG 409667 32 100.0 35 ................................ CGACTGGTGGGATGCCAAATGGCAGGCGATATCCG 409734 32 100.0 33 ................................ GCGATGGCTGGATCTGCCGTTCGACCTGCCCTG 409799 32 100.0 35 ................................ ATGATTGTTTCACCTTTAGTTTTGGGATTGTAATA 409866 32 100.0 34 ................................ TTCAAAGTCGGAACTGAATAAGGCCAAAGAGTTG 409932 32 100.0 33 ................................ CCTGGCCCGCAACCCTCGAGCGGCGCGCATCCA 409997 32 100.0 34 ................................ CGGAAAACCCGTTTGTCTGCCCGATCTTCGTTTG 410063 32 100.0 34 ................................ ATGTAGGAAATCGATCAGCCCGATGTGCTGTGTC 410129 32 100.0 34 ................................ TCATGCGTCCAAGCTCCCGCAGGATTCCAGCCGT 410195 32 100.0 33 ................................ ACATTACTGACAGCATGAAGCAACGAGGCTATA 410260 32 96.9 33 .............T.................. AGCAGGTCGGTGAGCTTCTGGAGGCAAGCTCTG 410325 32 100.0 34 ................................ AGTCCGGACGGCAGGCATGTGAGCCTGGCCGCCT 410391 32 100.0 34 ................................ TTGACAAGAAAGACATGGGGGTGGCCGCATGAGC 410457 32 100.0 33 ................................ AGATTATCTTTTTGCTGATGTAACTCGCGCGAG 410522 32 100.0 34 ................................ AGCCCCAAGGACGCGCAGGAAGTCGAAGGCAGAA 410588 32 100.0 35 ................................ CTGCCCGCGCTGACGGGAGTGCTGAAATGGTTTGT 410655 32 100.0 35 ................................ TCGCGCAGCCCAGTGGCGCTGATGGGCAGGTGCAA 410722 32 100.0 33 ................................ AAGGAGGCCCAGCAAGCTACTACCTTGGCTCAA 410787 32 100.0 33 ................................ ACCGATATATCCTTGGGTTTGTTGGACGAAAAA 410852 32 100.0 33 ................................ TTAACAGCGTCTACGGCACTCGAAAATCCCCGG 410917 32 100.0 34 ................................ ACTGCGACCGATCTGCCGACTTAACGCCCTTCCT 410983 32 100.0 35 ................................ GCGATGGAATACAAAAATAGGGTGTCCGGGCGTGT 411050 32 100.0 36 ................................ TTGCTTCTGAGCTGACATCGGCGGCGTGGGATCGGG 411118 32 100.0 34 ................................ GCTGCTCTTGGTATCTACCCTGACCCTGATGATG 411184 32 100.0 33 ................................ ACCGTGTCAGACGTAGTGTCAATATCCGAAGTC 411249 32 100.0 33 ................................ AGCATCAGCATGGAGACAGGCACGGTGGTGGAG 411314 32 100.0 34 ................................ CGTCTCGGCTGGCCATCGGTATAGTAGCCGACCG 411380 32 100.0 35 ................................ GCCAGGGAGTGGGATTGAAATGGTTTGTTGCTATT 411447 32 100.0 34 ................................ TCGTTCGCCTTCTCCTGTCCGGGGAAGGATTTCA 411513 32 100.0 34 ................................ CAGAACACCAGCTACACGACCGGCATCAGCACCG 411579 32 96.9 35 .......................A........ AGAAGCAGAACCGCTATCTGATGGCCAAGGTGCAG 411646 32 100.0 34 ................................ TCTTATGCTCGCTATCCCAAAGGCGCCATTTGCC 411712 32 100.0 34 ................................ TTCCGGTATCGTCATACTAAGCTCAGACATCATT 411778 32 100.0 33 ................................ CCGGCGTTGGCTATCGCCGTTGCGCCGTCAACG 411843 32 100.0 33 ................................ CCGATATAACCCCGGGTGTTGGTAACGAAAAAA 411908 32 100.0 33 ................................ TATTGCACCCTTGTCAGTGATGATGAAAAATCT 411973 32 100.0 34 ................................ AAGGAAAGAACACATTATAGGGAAAGGCAATATG 412039 32 100.0 33 ................................ CGCCCTACAGTTCCTACCAGCCGGACCGTGGAT 412104 32 100.0 33 ................................ TGGCCGGGGTAGACGACCTTGCCGTCCACGCTG 412169 32 100.0 34 ................................ ACCTGGTCGATGGCCGCCTGCAAGGCGTTCGCCG 412235 32 100.0 35 ................................ ACGCTGACTAGTATCTATTCGTCAGGCGGTTATGC 412302 32 100.0 33 ................................ ATGGACCCGAGCATCACCATCATCAAGGCAGAG 412367 32 100.0 34 ................................ CGTTATCGTGACCCGCTTGGTGATACGGTCGAAA 412433 32 100.0 35 ................................ CTGGGTGCCGTGACTGCCGCGCATACCATTACCAA 412500 32 100.0 34 ................................ TATGCGCCGTCTGACAGTCATTTCCGGACTACTC 412566 32 100.0 34 ................................ ATGGGGAGCACTACCTGGTCGCTTTTGCCAAAAT 412632 32 100.0 34 ................................ AGCCTGGCCTTCGCGTCCCGGTAGTTCCCGCTCC 412698 32 100.0 34 ................................ CGTTGATATGATAGCCAGGAACTTCGATACGAAG 412764 32 100.0 33 ................................ CCTGACCATGCGGTATATGCACACATCATCGAA 412829 32 100.0 34 ................................ CGCGCACAGCTACGTAAATTAAAGGCCCAGCACG 412895 32 100.0 35 ................................ TCTGAGATACGGGTACTCTGTCCAAAGGTTTGCCA 412962 32 100.0 34 ................................ GAGGTCAAGCAGTGAGGATAAGACACAATCCAAG 413028 32 100.0 33 ................................ GACTCAGGTATATGGTGACCGAATGCTCATATA 413093 32 100.0 34 ................................ ATAGGCTATAACGCGGTCTGTGCCGCGTGTGGGG 413159 32 100.0 33 ................................ ACCGGCCCGGCGTGGGTGTCCCGGCTGTCGGGG 413224 32 100.0 33 ................................ AACCGGCCCCGCTCATCGGCGGGGCTATTCCAT 413289 32 100.0 34 ................................ TGTTCTTCGCGGCTCATGAGGCTGCCGATGGCCT 413355 32 100.0 34 ................................ CCCAACGTTCGCTACATTATATTTGACGAAATTT 413421 32 100.0 35 ................................ TGTATTACACCGAGAGAAAGAGGCCCATTATGGGG 413488 32 100.0 34 ................................ ACGCTGATCCTGTACGCGCCCGACCCTCACAAGT 413554 32 100.0 35 ................................ CCATGGGAGCCGAACGCCCTGCATCCGACGCAGAA 413621 32 100.0 35 ................................ CCGGTCTTTGGGTCGTCATGCTCGCCTGGGTCCAG 413688 32 100.0 35 ................................ TGCTGGCTGCGGCTGTGCTGCTTGCCTGGATGGGA 413755 32 100.0 33 ................................ ACGATGTTCTGCTGTTGTGCATAATCAATCAGC 413820 32 100.0 34 ................................ ATCCACAATCCGTACTTTTCCTACTACGGAGTGA 413886 32 100.0 34 ................................ ATCAAATCCGTCACGACCATGGTGGATCAGGGTG 413952 32 100.0 36 ................................ CTTTCATCCATGTATCTTTCTTGATACACCTTTAAT 414020 32 100.0 33 ................................ ATCGGGGTGCCCGCCAGGTTGTTGATGGTGGTT 414085 32 100.0 34 ................................ TATATCTGTTCTCGCGCAGCCCGTCCTTGGTGGT 414151 32 100.0 34 ................................ CTTGGCGTGGAGCCGGAGCTGTTCCGGGATAAGG 414217 32 100.0 34 ................................ TCGCATATCAGTATGTACAACGGTTTGAATCAAT 414283 32 100.0 34 ................................ CTGACCGGTGCGCTAGTGCGATACATCCGGCCGG 414349 32 100.0 34 ................................ AGCGGTGCCGGTGGTTGGTTTGCTGGGGTCTTTA 414415 32 100.0 34 ................................ GCTTATACTTTCAAATATGGTAAGAATGCTCTAC 414481 32 100.0 34 ................................ AAGGTGGTGCCCCGCAACGCGGCTTCGGACGGGG 414547 32 100.0 33 ................................ ACCAGGACATTGAACCCTCTTTTGGCCAGGGAG 414612 32 100.0 33 ................................ TTTCAACACGAAGGCAAACGGCTTATAGAGCAG 414677 32 100.0 34 ................................ TGGGAGGCCTACATATGATCGAGGATTACCAGTG 414743 32 81.2 34 .C.A....T...GT...G.............. ATCAATGCAAAGGCAAAGTTTTCACCATCCATGG 414809 32 93.8 34 ......T............T............ GCCCAGTCTTGGGCCCACTAAGGCAATGAGAACG A [414824] 414876 32 81.2 0 .A.....T....GT.....T........G... | G [414903] ========== ====== ====== ====== ================================ ==================================== ================== 103 32 99.5 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : TCCATTACTACGGGGTGAGGCGTCATATCCCTGTTGATCAAGTGATGATGTTATAGAATTGTGTGACTTTGATTTTACTGTTTTGTTTGAGCCGCGGAAATTAGACGATAGCTAGATGGCTGGTGTAATTCTGTAAACAGTGCAGTATGTTGACTGTTGTTGTGGATCATCGTTGGCGCGAAACGCTAGCAATCATGTATTCACCAGATTCTTCGCGCCGCAAAACTTTACTTCATGACGATATACGGTCTTAATTTCACATGTTTTTGAGCTGAGTTCTTTTCGCATTTCAAATCAGACAGCTATTCATACGAAGGAAGCTAGAATTTTAGTGAATCGGATGAACAGTTGTTTGATAACTGAATAGTGATGTTATCAACTTGAAGCATCATCTCAATTGCTCGACTAGAAACAGAATCTGGGTACCTGGTTTGGGCTGTTAGGAGTCGTCAGCCATTTAAAGCTGATCGTATATTGGTCATCGGATGTATCATTGTGCT # Right flank : TACTGTTACGAACGGCTCTCTGCCTGCGGCAAATGCATTGCCTCCTACGTGGAAGCCTAAAACGGAAAACTAATCGCGCTACTTTGAATTAACCAGACAGCACTGCCTCTTAGCTGGAATATGTATTAAATCAGTTCTTCCCTAAGAACTCTTTTATAAATTCTGCTCCTCAAAAACATAAGTATGAGTTGCTGCTTTGGTATAGTACCGATCATTTTCATGCCATTCTCTCATTCCTAGGCGCGGGTGTGCCGCCCGGTATAAGCTTGTATGCGATGTGTCCACGAGTAGCGGACTTGGAGGTGTGGTCGCCGATGGAGCAATTCGACGATGCAGGTGGCGCGGAATCTGGCAGAAGCGCTTCAGCCGATTCTGCATCTGTGCCATTGCACCTGGATGATGCGACTGCTGTGAACAAGGTTTCGGCCCACCCTGAAGCGACTATTCCGGATTCGGAATATTCTCTGGCTGAGATTGAGCAGCGCCGTGCCCGCCCGGTC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //