Array 1 1352523-1353262 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032093.1 Vibrio alfacsensis strain CAIM 1831 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 1352523 35 100.0 35 ................................... AACATATGTTGATGTTGAATATGTTGTTGTAAATA 1352593 35 100.0 39 ................................... TGTAACTATCCAAGCCACCCAAGCGAAAAATGCTACGGT 1352667 35 100.0 37 ................................... TTTCCCTAATAATGGAGTTTAATTCAGTTACATGTTT 1352739 35 100.0 34 ................................... AAACAAGTCGTCTTCATCCACATATTCAGGAACT 1352808 35 100.0 34 ................................... CTGGATCATTGGATGTTCAAGCGTCATGTTTTGA 1352877 35 100.0 35 ................................... TCTCAACTTCGAAACGAAATGCTTTGTTTGGGTCC 1352947 35 100.0 37 ................................... TTATTCTTGAGCATATTGAAATCAATTGACTTTTCGT 1353019 35 100.0 34 ................................... TCCAAGTAGGATAGCATCGTTTGTATGGTAAAGG 1353088 35 100.0 35 ................................... ATCGGGTTCATGCCGGCTTGAATAGATTTCATGCC 1353158 35 97.1 35 ......A............................ GAATAGGTTTGTCCATAGGCGTTCATCGTTCTTGC 1353228 35 85.7 0 ..............................TTCTT | ========== ====== ====== ====== =================================== ======================================= ================== 11 35 98.4 36 GTATTCGACATGCCCAGATTAGATGGGATTAAGAC # Left flank : AAAGCTAATCACACCCGCTTCAACAGAGCAGCTTGCCATTTCATCCGCTTGAACCTCCTCAACAAATTGTGAAAGACCAAGATTCAGTTCTTGATTTGGTGCTCCGGACATACTAGAGGAAGCATCCATAACAAGCATTACAGGGCAACGAGGGGCAGGGTTTGAGATAAGCGAATCATCAAAAATTTGGGGGTAGTAACTCATGGGCAGCGTCCTTAACGTTTCGTAACTTAACGAGATGGATTATGCCTAAGTAAGAATTTTAAGCGTAAACTAACAAATTTGTGTGGAACATTAGAGCAATACCTGAGTGATTTGGTCGAGATTGCGGATTAATAAAAAATGTTTTAATAATTAAAGGTAATTTTCAATATTTTCAGATGGTTACGGGAAAAATAGAGCGTTGAGTTTTAAATGAAATTTATAAGTTGATCAATGTCACATATTTTACCGCAAACAAGCGCTGTAGAGCTTGATTTTAAAGGGTTACAGCGGGTAGA # Right flank : TTAAATCACAAACCAATCGTCATGCCAGTGAATTTGTGATTTACCATCGGTCATTCGTGTCGCAATGTCTTTACCACAGAGCGGGTAGTAGTGGATACGATCTTGCTTTTTGATAACCTGCTGTAAACGTTTTTTAAGCTGACTGAATCTTTCTGGACGCAACCTAACTTCAAACACACTGTACTGAATTCGCCAACCATGCTCGTTGAGAATTTTTACCACTCGTCGTCTGCGTTTGTTGCTACATACATCAAAACACACTACTGCAAACATCACTCATCCTTAGTTCTGTATTACACCAGTTCATAACTTTTATATGTGTGAATTTGACCGCTTCCTTGAGCAAAACGTTTAGCTTTGCAATGTTTACAAAGATGAAAGTAATGCACTGCATCTGTGATTGGGTCGATTTTTTGTCGCAGCGAATAGCGTAGTCGGTGGAGTTGCTGTAGGGTAAGCATGCACTCGAATACGCTGTACTGAACTCTGACACCATGATT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCGACATGCCCAGATTAGATGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1357246-1357562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032093.1 Vibrio alfacsensis strain CAIM 1831 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 1357246 35 100.0 36 ................................... TTTTAAAGCAAGTGTAACGAATGTCATAAAACTCAT 1357317 35 100.0 34 ................................... CATGAAACTTCAATGTATCATCTAATAGCATTTG 1357386 35 100.0 36 ................................... GATTTTAGTTTCACCGAAACCTTTAGTTACTTCGAT 1357457 35 100.0 36 ................................... CGAGGAAGTTGAATGCCACCTTTGGATTCCATTGTT 1357528 35 82.9 0 .....GA.TT......................C.A | ========== ====== ====== ====== =================================== ==================================== ================== 5 35 96.6 36 GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC # Left flank : AGTTGACGGATGTATGAGTGGTGAAGTTTGAGATGCGAGATAATCCATTTTCTCAATGATTTCAGCGGGCTTAACATGCTCTAATATTTGTGGACTATTGCTTTGATTAACAATACTCTGCAAACACTGTGTCACTTGATTAAGTGCGATGGCGAGTTGATTGATAGCTTGCGTTAATTCTTGCGTCGATTGTTCCATGACAGTCACCTTCTCGGTTGTTTGGCTACAGACTCAATGTACTCCTAAAGTGCTATGAAAGAGTTGGTTGACAAATTTGTACAGTGATCATGGGAATGAAATACCTGACTGAATTACTTGAGATTGCGGATGAATAAGTAATTGCATTCTTAGTTCACTTAGTAATTAATAGTAAAATCAGATGATTAAGGCGAAATTATTCATCTAAAACGTATGGTTATTTGTCGAGAGTGATGTATATCACAATTTTCTCCGCAAAGTGCCTCTGGAAGGCTTGATTTTAAAGGGCTACAGCGGGTAGA # Right flank : AAAAACTCGTTCAGTGACGACGAGCTTTTTCATGTTCAAGTAAAAGTCATCATAGGAGAGCCGAGTAATATTTTGGTTTTTACCTTATCCATTATTTTTCGCTTATAGTGGTACTGGCTAGTTGTACTTGGCTCAATAAACTTCCCCAATAGTTTGTTTGCGATGCTAATGTGAATCATATATTTATGTCCATCACAATGCTTCATTACAAACCGTTCAGCCCCTTCAGAAAGCTCCATCCATGAGTGATTTAGCGCACTTTTAATCAATATGGCTAATGCGGATTTTGCTTGCGGTATATATTGATGGTGGATGCCCATTGCCACCAACTTCCACCCCTGTTTGGCTTTATAGACTGTCACTGCGAGTACGATGCCGTCTTTAACCAATATTTGCCACTGATCACTTTCTTCTATTAGTGCCTTTGGTGAGGTGTAGTGCAATCCGCCAGACACAGTTTGGTAGCTGTCGCTTAAGATTTTCCAGACTTGCGTTTGGTA # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 1374268-1374730 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032093.1 Vibrio alfacsensis strain CAIM 1831 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 1374268 35 100.0 37 ................................... GAGACATCAATTGTCCCATGACTCACAATCTTAAACA 1374340 35 100.0 38 ................................... TTTGTAAACGACGCATTTCTTTTCGGAACACACCAAAT 1374413 35 100.0 37 ................................... CTGAGTTCATTATATTTCCTTACATTTCTTCTGCGAT 1374485 35 97.1 37 .......G........................... GACACTATTGATAGCACCCCACAGTAGGCGACGCTCA 1374557 35 100.0 34 ................................... AGAGATAGTCATCTCTGCTTTGATAGTATCAGCC 1374626 35 100.0 35 ................................... GTTTCATGCGACATCATAGTTAGATCAGTCATTAC 1374696 35 82.9 0 ..............A...............TTCCT | ========== ====== ====== ====== =================================== ====================================== ================== 7 35 97.1 36 GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC # Left flank : CCCCAACCAAGAAGATATGGCAAAACACAAAATTGATATGGAGCCGCTTGTTAAAAGAAACCAATGACGAAATTCAACGAGTTCTTGGTAAAAATTGGCAGATCACTATATCATTAAAACGGTCGCGAAACTTAAGAAAAACAATAGTGATAAACGCCCAATTGAGTGCAAAGGCTTGAAAATACTTCCAGATAATATCCATTTTGCACAATAAGTAAGCTCCCTGCACGAGATTTTTATATTCATCCCGATGAGCTAATTCCCTCATCGGGATTTTTCTATTAGGTAGCGTAAAGGCCAATACTTGATTATTTTGGTCGAGATCGCGGATGAATAACGAGATGTTTTTTATATCTATATGTAATTAATTTAAAATTCAGTTACTTATGAGTATAAAGTTTTATTTTTACAAAACCGGCTTGCTGGGTGTGATTAATGTCACGTATTTTGCCGCAAACCGCCTCTAGAGCCCTTGATTTTAAAGGGCTACAGAGGGTAGA # Right flank : TCAATTTCTTGCTCATGCTATTTGAGTGTTTTGCAAATGTTTGACGAAATAACTGTATTACCATTCGTTTTACCGCTATTACACAAATTTGTGGTGTTCTTCATTCAGCTTCCATCGCCTGTACTATTCCTCTCAGCAAGAAGAGGAATGCGTTATGTCAATCAATGCACAAACTTATCGGTCTCGGGACATCAGTGCCCGTCTAGATGATGCAAAGTTACCCGTATTAGATGTCATGTTTACTGGCGTGACTGGTGCAGGTAAATCATCCACAATCAATGCCTTATTTGGCTCCAACAAAGTGCTCGTTGGGCATGGGGTTGACCCCATGACGATGGAGCTTGATGCTTACTATCTACAAAATGCTTTTCGCGTTTGGGACACACCAGGTCTTGGCGATGGGGCAGAACAAGACCGTACTCATGAACGCAAGTTAATCGATTTGCTGTTTAAAACTTGGTCTGCTGATGGGGAAACCTACGGTTTTATCGATATGGTTA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 1442503-1442121 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032093.1 Vibrio alfacsensis strain CAIM 1831 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 1442502 35 100.0 33 ................................... CTGATGTATACATAGATAATATCTCCATAAGGT 1442434 35 100.0 36 ................................... TGGCGCATTGAACATCTTCGGAAAAGTTTGCTAATT 1442363 35 100.0 36 ................................... GCGCTTCCCATGGGATTTGCATTTGTGACATAACAA 1442292 35 97.1 33 ................................G.. CTTAAGCATTTTCATAGGATTTTCCTCTTTAGT 1442224 35 97.1 34 ................................G.. ATTTTGATAGCTAGTTGCGGCTTAAGTTTGATAG 1442155 35 74.3 0 .........C....G.ATTTT.....A...A.... | ========== ====== ====== ====== =================================== ==================================== ================== 6 35 94.8 35 GTCGCAAGATATGAAGCCGCATAGGCTGTTGAAAC # Left flank : ATCGAATGCAAAACGGGAAAGTTATCGCAAAAACCTGTGCTTAACCAACAAACCATTTATCGTCTCGATTCGATTACGGAACTATTAGGCGAGAGTTGCCACGGTTTTGTTGTATCGTTAGAACCTTTAGGCCATCAAATTAACACCCGAGCGTTAGAGGTCGGGATTCATCTATTGGAAGGGTACGATATAAAACAACTCTCGCAACGGATTGAGTCTATCGCAAACGGTCACAATGAGCATATTTAGTGATTAAACATCATGCTTATCAGCATTCTCTGAACTTGCGCCGCAAAGCAGTGATATCTTCCAATTTTAACCATAGTACTTCAAAAGCAAGACAATGAGAGCCAACCCATTAATTTATAAGTCTTTGATGCATTATAAATTGGTCAAAAGCTGTATCTGCTCACAAAAGTGACAATATATTATGCTATTTTTACTGGCGAGCCAAATCAGGTCTAAAAAGGCTTATAATAAAAGGGCTTAGTAAAGGTGCA # Right flank : TAGGTTTGTACAACATGGCTTATTAGTTTGGCCTGCAAATAACATGCAGCCATGCCAGCGCCTCTTCAATAAAAGAGAGCGGCATCGCTCTCTTTTAAACGTCAATGATGTCTCTCATCATTTTACTTTTCTGAATAAACTCTCCATCGATTCAGTCAACTGCACAGTCACTGACCTTAGTTCAATGTCAGTGAATAACACAAACCCAATACCGCCTCCCAACGCCATCACGCTCCAGTAAACTTTAGAACTCGTGCGAAAACACGTACCAAGTTTCGCGATTGTCTTTCTGATTTTTTGCTTAATCCGAGCTCCAAGCCGTAGAGGCGTTTCACTCTCCATTTCTACCCGCGACTGCCCCAACACGACTAGGCCATTCACTATTTTTTTGTGCAAAAGCCACGCAGAAACGAAATAGAGAAACAATAAAGGTACCCACCAATATGTCTCCGTCTCGGAGGCTTTTCCACCATAAAGTTCATAAGCGGTGCCCACTAAAG # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAGATATGAAGCCGCATAGGCTGTTGAAAC # Alternate repeat : GTCGCAAGATATGAAGCCGCATAGGCTGTTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //