Array 1 1738536-1739022 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036293.1 Akkermansia muciniphila strain 139 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1738536 31 100.0 34 ............................... CTGGCACAACGACGCCTCCCTTGTCGTCAAGGAC 1738601 31 100.0 35 ............................... CGTAATGCCCCCGTCGCTGCTCTGGGTGGTGGTCT 1738667 31 100.0 35 ............................... TTTTTATTCTTTGTGCCTGATGCAGATTCCTCCCC 1738733 31 100.0 34 ............................... CTGGGCTTGGTCAATGGATTCCAGCAGCGCTTCC 1738798 31 100.0 34 ............................... TTCAATTCCGCGATACGTGTGAGCCTTTCGTTTT 1738863 31 100.0 34 ............................... ATTTACATTTACCGTTCCGCTCGTAACGACAAAA 1738928 31 100.0 33 ............................... TATATTCGGCCCATGCTTCGGCAATGGTTTCTT 1738992 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 8 31 100.0 34 GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAACCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGAGGAAGACAGGTCAGTTGACTGCCGTTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTACTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTGCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGGCCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : CAAGGTATGTTCCATGCGACGCACAGTTGAGGAATGACAGGAGAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAAACACGGGAGTTAAGTAGGAACAGGCCAGATACGAGCTATCTTATAAAAGTCGGAGCTAAAAAGAGGGCAGATGACAGGTATCTGATATAAGTACACAAGCTATGCAGGGATGCTGCACAAGAGCTGCAAAGGGTAGGTGATAGAGAAAACGACAAGGTAAAAAATCATGATAGGATGTCCCGCATGTGTACACCTGCATATTGCATCCCCTTGTATGGCTCCATGACAGTTATCTCGCCCGAAGACCGAAAGAAAAAGAATCCGCAAATTTATCATCTCCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAAAGAAGTAAGACGACATGCTGGGTGCGGGATGTACTCGACAATGTGTGGATTGTGATCAGGAACGAAAGAGAAGATGATTGAAAAGAAAAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1772273-1772887 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036293.1 Akkermansia muciniphila strain 139 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 1772273 31 100.0 34 ............................... CGGGTCTTCGTCATCGTCCAGCCCCCGGTCCGTC 1772338 31 100.0 34 ............................... TCCTTTCCGTCGATGATAGCCTTTAATTCACCAA 1772403 31 100.0 34 ............................... TGTGTCCTTCTCATCGTCCCCCTCTCCCGTGTCC 1772468 31 100.0 34 ............................... CTGAAACAGGCGCGGGACGATAAAAACATCCCTG 1772533 31 100.0 34 ............................... GATGTATTGGAGGTGGGCGTATCCATAAAACATG 1772598 31 100.0 33 ............................... AGCAGGGATGGGCGTGTGTCCGATGTGCTGGAG 1772662 31 100.0 34 ............................... GAGTTTGAAATGGATTATCGCGGCGACTACAACT 1772727 31 100.0 34 ............................... CGTGCTTGCCGTGGGGAGGGCGCAAAAAACGGCT 1772792 31 100.0 34 ............................... ACGTTGATTTCCCGGTCTGTCAACTACGACGGGA 1772857 31 87.1 0 .........A......C............GT | ========== ====== ====== ====== =============================== ================================== ================== 10 31 98.7 34 GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Left flank : GAGAGGCTGGATAGCCAGACGTCTTTATCGGGAGATGGATTGGACGCTCCTGGATGACCGCGCTCCGGAAGATTGGACGATTGGACGGGAGGTGTTGGCCAGGGTTCCGGCAACATTGTGCCGCATTGATGAGCCATGGCGCAAACGTTCCCCGTGGAGTGTATGGACGGCCTGGTGCTGGCCCAGCCGCACGGTAAGCGCCGAGAGTTACGCGGCCAGGTTTGCCGTGGTGATTACCGGCAGCCCCCGCATGCCCGATCAACCCGCCAGCGAGCGGGCCAGGGTGATGCACCTGCTGGCCGACGCCAGGGAGAGGATGCTCCGGGAGGGTGTGGTCAGGGAGGACGACGAGACGGTGGATTGGGGTGACCTGCTGGCCGCTTGTAAGGGGGAGGCAGAGTCGATGCAGACCCCCTGCACGGAGCTGGCAGACAGACAAGTTATATAAGATACTTGTCGTAGTTCTATCAGATGTCTTGGCGCGTTACACAGTAAACCCG # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCTTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCATCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2220310-2220009 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036293.1 Akkermansia muciniphila strain 139 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 2220309 37 100.0 29 ..................................... TAAATTCCCTGATCCGCTCATGCTGAACA 2220243 37 100.0 29 ..................................... GAAAAGCTTTCACAGTTTGCGGGCCACAG 2220177 37 100.0 29 ..................................... AAGCAATTTTTATACGGTCAATCATCAGG 2220111 37 97.3 29 ....................................T TTCGGCGCGCTGGACAAGGGGTTCAATCG 2220045 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 99.5 29 ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACA # Left flank : CTGTCATGTACCGGGATAAACAGCTGCCGTTGAAAGCGGCGGTAGAGGCCGTTTGCCGCAGTTTCCGCAAAGCAGTTCTTGCCGGACAATCCGGACCGTATGAACCATGGCTTATGACAACTATAAAATGGGCTGGCTAGTTGTGTTCTTTGATCTTCCCACAACCACGCCGGAAGATAAAAAAAACTATCAATATTTCCGTAAGGCTCTTTTAGAAGACGGCTATACGATGATTCAGTATAGCGTCTATGCCCGCGCGTGCGTTACTCAGGAAAGAATGGCTACCCACTCCCGCAGAATCCAGAAAATGATACCGCCTGATGGTTCTGTCCGCTGTCTTTTCGTTACGAATATCCAGTGGGATAAGATGTTCGTTTTTCATGGCAGGTCTTGTCCCCGACAGGAGGTTTCCCTGCCTCAGCAGATGCTCCTCTGGTAAAAATATCGGACGCCGTATTTTTTTATAAGTCGCTGAACATAAAAATAAGGCACAGTATCTA # Right flank : AATGCGCCTCCGGTCTGATGGCGCAGGGGATTGCTCCGCCTTTGGCCACGCAATTCCAGACGGATTTTTGTCAGTCTTCCTTTAACGGAGCGGGAGAAACAAAGCTGTGCGTCCAGAACATGGCGCCGGTTGCGGAGGTGATGCCCTCCATATTAAGATAGCGGGCCAGCAGCAGGGAGGGGGAGGAGTGTCCCATCTCCTTCTGGAGAAGGTTTTGATTGCAGAAATGGGCCAGGTGGTAGGAGGCGTAGGTATGCCTCAGCACGTCCTGAACCCATCCGCTTTTTTTCAGGATGCCGGACCGGCGCCTTACTTCCCTCCATTTCTTTTCCCAGTTGGGCGGGCAGACGGAACGGGCGGGGGAACCGGCGGAAGACATCCGGCTGAGGATGGAACCCAGCACGGGAAGGATGGAAACATGGCGGCTCCCTCCCGTTTTGGTATGGGTGGGCGCCAGTGAAACTAGGCCGGATTTCAGATTGATATGCTTCCACGTCAGC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 4 2291606-2289014 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036293.1 Akkermansia muciniphila strain 139 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2291605 33 100.0 35 ................................. CGGCCATAAACGTATTGCCGCCCTCAAAAACGTTA 2291537 33 100.0 34 ................................. TCATCAGTGCCAGCAACGATGAAACCCCCCTCAT 2291470 33 100.0 34 ................................. AATGATACTGTGCGCGTGGAAACCGGGAAAATCG 2291403 33 100.0 34 ................................. CCGGTCAGTCCGGGCTTGTCACGCCAGTAGTCCG 2291336 33 100.0 35 ................................. CGGCTTCATCGACGATAATCGGAACCTTGAAGCCG 2291268 33 100.0 36 ................................. TACAATGCGGTATCTTACAGCAATCCGGTGGTATTT 2291199 33 100.0 35 ................................. GTTTTTTTTGTTTGGTATATCTTTTTGCTTGGTTA 2291131 33 100.0 34 ................................. TTTTTCTCTGACAAAATGAGGTCGGAGAACGGCT 2291064 33 100.0 35 ................................. TGTGTTCAAACCTCGTTGCTTTACCCAAGCCTAAT 2290996 33 100.0 35 ................................. TCCTTACGTTGTTTTACGAGGTATCATCCTCTCAG 2290928 33 100.0 35 ................................. AACGTCCAGTTCATCGTAACAATCCTGTTGTGCTA 2290860 33 100.0 34 ................................. TGCATGGCGATCTTCATTGCTTCCAAGCGGGAAA 2290793 33 100.0 34 ................................. ACGAACCATAGCAAATCTTCCATTGACGATTGGA 2290726 33 100.0 34 ................................. CTTTTCTAATTTGCAACGATTGCAAATTTTTTTC 2290659 33 100.0 34 ................................. TTTTTCTGCGCCTGCGCCGCCCGCTGGACTTCCA 2290592 33 100.0 34 ................................. ATCGTCTATGCCGTCTTTATAGGAGGCGGCGACT 2290525 33 100.0 34 ................................. CTTTGAAAGCGCGCTCTATGCGCTGCCCAGGAAA 2290458 33 100.0 34 ................................. CGGTCATCCCTCGCAGCATCATCCTGCATTTCTG 2290391 33 100.0 35 ................................. GCCGCCTCCTTCCTGTTCTTCTCCTTCCGGGTATT 2290323 33 100.0 34 ................................. CCGTTGGGCGGGTAACAATCGCAATATCCTATTA 2290256 33 100.0 35 ................................. CTTTTGCCAGTACGGAGGAATGCAAGGCCCTTCTT 2290188 33 100.0 34 ................................. AATAACTCTACACGATATTGGAGGGGTAGCTCGT 2290121 33 100.0 34 ................................. CGTTTTTCCCCTCGAAAAGTATTTACAGTTTTCA 2290054 33 100.0 34 ................................. CACATACTTGCGCCCCGCCCGGACAGCTCCAAGC 2289987 33 100.0 34 ................................. ATAAACTTTTGTTTTTTGGATGTACAGCAGCACG 2289920 33 100.0 34 ................................. TTACTCTTCCGCAAAATTGTACCAGCGCATCTAC 2289853 33 100.0 34 ................................. CGGAGAGTGGGCACGGCTAAGGCCCGTGAAATTG 2289786 33 100.0 34 ................................. TCCATTGCCGCCCTGCATGCTTCCCCGCATTCTT 2289719 33 100.0 35 ................................. TTAGTTGCCGCCAGGGCCTCTTCCGTCAGCCAGCC 2289651 33 100.0 34 ................................. AATAAACCCGTACAGTTCCAGCGTGCCGGAAGGG 2289584 33 100.0 35 ................................. CTCAGCATTGCTAATCCTGATAACGTCAACCAGAA 2289516 33 100.0 34 ................................. TCCCGGTGCTGCCCGGTTCATGGCTGCCACCCTT 2289449 33 100.0 35 ................................. ACACGTTTGCAGGGCCTGCCGGGCAATGGAATTAT 2289381 33 100.0 34 ................................. GACCTCAAAAGCGGCCAAATCCGCAACTACTGGG 2289314 33 100.0 34 ................................. CGCCGAAAACGTCCCGCAAAAACAGCTCGCAGAG 2289247 33 97.0 33 ............G.................... GACCATATCCCCCCAAGGGAATTTTAGAAAGGA 2289181 33 100.0 35 ................................. CACAGCCTCCGGGCGACCGCCGTGACCGTCCTGCG 2289113 33 100.0 34 ................................. TCCATGATGTCCCGGTCGGAAAATCCAAGGTCGC 2289046 33 93.9 0 .....................A....C...... | ========== ====== ====== ====== ================================= ==================================== ================== 39 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGACAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGCAATGTATAAGGTCGGGCGCA # Right flank : ATGACGAGTGCAAGCTTCGAGAAGATGCCACCCGCCGTACTCTCCAGGGAGTACGTAACTTATCTGGAAAAGAAAAAGCTCTCCGAACTTGTTTGGTCTAGAGAGCTTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAAGATGGGGTCCTGCGGTTCGGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCTTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2331455-2331159 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036293.1 Akkermansia muciniphila strain 139 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 2331454 31 100.0 34 ............................... TTTTAAATCAGTTCCGGTCTAAAATCGGCGTCAT 2331389 31 100.0 34 ............................... GTCCTGTCAAAATCCGAATTTGCAGAACATTCCC 2331324 31 100.0 39 ............................... ATGGGTGGACTGCATCAGGCTTCTTGGAGACGACATGGA 2331254 31 100.0 34 ............................... CGGGTGGTCGGTCCGCGTGGCTCCCTTTCCGGCT 2331189 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 5 31 100.0 36 GTCGCACTCTCATGAGTGCGTGGATTTAGAT # Left flank : GCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGCGCCTCTTCTTTTGTGGAAAACAAAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGTTAGGATGTTTCCGCATCGTGCACAGGCTCTGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTACGACCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGGTAATCAGTGCCATAGACGCCCAGGA # Right flank : GTCGTAGATTGAACGACCTAATATCCCTAGAATGAGAAGGAGCAGTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGCGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCTGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //