Array 1 6535-5377 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKQ01000003.1 Listeria monocytogenes strain FSL L7-0139 NODE_3_length_516665_cov_64.412689, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6534 36 100.0 30 .................................... TAATTGCCGCAAAAGTAACCGAAGCCGAAT 6468 36 100.0 30 .................................... TTTGTTTATATAAGTGTTTAAATCAGTTAA 6402 36 100.0 30 .................................... TATTAAATCTGCCAAACTCCATTTACTGCC 6336 36 100.0 30 .................................... ATTAATTACTTAACAGTATAATATCAGATT 6270 36 100.0 30 .................................... CTAGGTTACTCAGAAGCTTACACATTCGAA 6204 36 100.0 30 .................................... TTGTTCTAGTTCGGCCGTTGCGTCGATGCC 6138 36 100.0 30 .................................... TTGGTGAGATTGGACTTAAAATGATGAACG 6072 36 100.0 30 .................................... TGATGCACGTTCATCTGTTGTTAGTTGATC 6006 36 100.0 30 .................................... AATTGAATTCGCAAAACGATACTTGTATTT 5940 36 100.0 30 .................................... CAGTATCTACATGACTTTTACGCAGCCGCA 5874 36 100.0 30 .................................... TTTAAAATGCCATGGATTCATTTGTTGATT 5808 36 100.0 30 .................................... AACGACTAAATGTTGAGCGAATTATCTTAG 5742 36 100.0 30 .................................... AAGCCGGCAGAAACAGTAGCACAGATATTT 5676 36 100.0 30 .................................... TAATTGCCGCAAAAGTAACCGAAGCCGAAT 5610 36 100.0 30 .................................... AATTAACTTCACACCTGCATCAATAATCTT 5544 36 100.0 30 .................................... CTTGATTTTTTGCAATAGACAAAACGAATG 5478 36 94.4 30 .........T................T......... GGGCTGGTTATTTTAGGCGGGGGAGCGCTT 5412 36 75.0 0 ............CA.....C.....A.C.A..C.CA | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 98.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATGGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCCAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AAGATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGAGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATTGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1149987-1147950 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKQ01000001.1 Listeria monocytogenes strain FSL L7-0139 NODE_1_length_1447169_cov_48.295853, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1149986 29 100.0 36 ............................. AACGCGGCGGCAGCTGAACCTAGCGCGACTTTAAGC 1149921 29 100.0 36 ............................. AATCTCCTTATTTTTTTGATATTCGTTCATGTCAAA 1149856 29 100.0 35 ............................. TTAGCTGCATCATGGGGAGCAGCTAAAGAGTTTGT 1149792 29 100.0 35 ............................. CTAACAATGATGCGTAAGACCGCAGTTGTTAATGC 1149728 29 100.0 35 ............................. TCCCATCAGATAAGCCGGGCTTGTTTTCAAAATGA 1149664 29 100.0 35 ............................. ACGGTTAGCCCAAAAAGAGCTAATGCATTAGCCCA 1149600 29 100.0 37 ............................. ATACCTTAGACTTAAAAGAGACTTCTAAAGAGAATAA 1149534 29 100.0 36 ............................. AATCTTTAGCTATTGGTCTTGAGAAAGCTATCGTAA 1149469 29 100.0 35 ............................. GCTGATAGCCCCTCGCGTAATGTGTCCATGTCCTT 1149405 29 100.0 41 ............................. AAAGAAACACTGATTTACATCGGTATACAACAAGACGAAAT 1149335 29 100.0 35 ............................. AGATTCACAACTCCTAAACCATACTCCCAGTAACT 1149271 29 100.0 35 ............................. TTACTTTTTATCATCGTCGCTTGATTTCTAGTTAA 1149207 29 100.0 35 ............................. GATGTTGCAAAAATGAAACTCAAACCAGCACTAAC 1149143 29 100.0 34 ............................. AATGCCGCTGTTGCTGACCCTAACGCTACTTTCA 1149080 29 100.0 35 ............................. TTTGCCCTTCTCTTTCGACCACAATCCCAGCAACT 1149016 29 100.0 37 ............................. TTTTGTGCACCCCAAGCAAGTTTCTGAAAAGCTTCCT 1148950 29 100.0 36 ............................. AAGGTCTTTTTAGCCTCATCAAGATGCTGCCCTGTT 1148885 29 100.0 34 ............................. AATGTTTTACATATTGCTGTATAAAATGTCTAGG 1148822 29 100.0 37 ............................. CTGCTTTCTTGATAAAATCTATAGTATCAGTCCCTTC 1148756 29 100.0 36 ............................. AAAGATAACTATGATTTTGCTGATGTTTCTGACACG 1148691 29 100.0 36 ............................. ATGCTTTCCAGGTTCAGCAGATGCCACTTCCTTCAC 1148626 29 100.0 35 ............................. CTGTTTAAAAGTCATTTCGGGTACATCGTATTCTT 1148562 29 100.0 35 ............................. CAATAATGAAGTGATTTGTTTATCACCACATGCTA 1148498 29 100.0 35 ............................. ATTGGAAAGTGTTCTAAAAGCACTTGCACAATGTC 1148434 29 100.0 36 ............................. CTGATGTAGCTTGTTTTTAACTGTTCGGTGAAATAA 1148369 29 100.0 36 ............................. CACGGTATCTACAATGAGCATCTGTCAAAAGACTGC 1148304 29 100.0 36 ............................. TCAAGTGGAAATCGAATATAAAGATAATCATTTTTT 1148239 29 100.0 35 ............................. CTATTGAGTTTTGTATTATTCCAGACTGGAATTCG 1148175 29 96.6 36 .........................G... TTTGTTAACCCACTAGCTAAACCACCAGCGCCCTTC 1148110 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 1148044 29 100.0 36 ............................. AACGCATTAAATGGCGTGGATTTATCGGATGTTAGA 1147979 29 93.1 0 .......................C....C | A [1147954] ========== ====== ====== ====== ============================= ========================================= ================== 32 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCAAAATCCAAGCCTTTTTCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTTGCCCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATCCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGCACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGTCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1165808-1165585 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKQ01000001.1 Listeria monocytogenes strain FSL L7-0139 NODE_1_length_1447169_cov_48.295853, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1165807 29 93.1 36 G.............A.............. ATCTCATATTTCCCGGCTGGAATTCATTTTATTATC 1165742 29 100.0 36 ............................. TCGACATAACACATATATTTAAAATCATTAAAGCTA 1165677 29 96.6 35 G............................ GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT 1165613 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 93.1 36 ATTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCATAGAAGTTATCGCTTGCGCAACCCACTCTGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGTTGGAGGAAGGGAAGTTTGACGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : ACCCTTCATATGCCCCCCACCATCATCCATCAAAATCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCAC # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //