Array 1 8081-5334 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDSY01000003.1 Listeria monocytogenes strain N12-2451 NODE_3_length_513365_cov_51.2774, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8080 36 100.0 30 .................................... TCGTTCAGCACGTTGAATAATATCACTTAC 8014 36 100.0 30 .................................... TTATGGTAAGGTTTCGCAAACCGTTTCATT 7948 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7882 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7816 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7750 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7684 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7618 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7552 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7486 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7420 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7354 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7288 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7222 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7156 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 7089 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 7023 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 6957 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 6891 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6825 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6759 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6693 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6627 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6561 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6495 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6429 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6363 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6297 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6231 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6165 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6099 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6033 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 5967 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5901 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5835 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5769 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5703 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5637 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5570 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5504 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5438 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5372 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5337,5340,5345] ========== ====== ====== ====== ==================================== =============================== ================== 42 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 49405-50733 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDSY01000008.1 Listeria monocytogenes strain N12-2451 NODE_8_length_205443_cov_50.9054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49405 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49471 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49536 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49600 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49666 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49678] 49734 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 49799 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 49864 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 49930 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 49994 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50059 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50124 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50189 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50252 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50315 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50381 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50444 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50509 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50575 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50640 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50704 29 93.1 0 .......................A....C | C [50727] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //