Array 1 87958-87013 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHHO01000025.1 Escherichia coli P4-96 contig00025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 87957 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 87896 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 87835 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 87774 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 87713 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 87652 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 87591 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 87530 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 87469 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 87408 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 87347 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 87286 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 87224 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 87163 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 87102 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 87041 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 114905-113656 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHHO01000025.1 Escherichia coli P4-96 contig00025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 114904 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 114843 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 114782 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 114721 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 114660 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 114599 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 114538 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 114477 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 114416 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 114355 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 114294 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 114233 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 114172 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 114111 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 114050 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 113989 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 113928 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 113867 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 113806 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 113745 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 113684 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //