Array 1 1586023-1587149 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034099.1 Limosilactobacillus fermentum strain LMT2-75 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1586023 29 100.0 32 ............................. ATAATTACCGGTAACTGGAAGGGCGCCTGGAA 1586084 29 100.0 32 ............................. GGTGTGAAGCAGGACTACTCCGCTATCGGTCA 1586145 29 96.6 32 ............................T ATAGTTCAAAATACCAGCACAGATATTGTGGT 1586206 29 100.0 32 ............................. CGTGAAGGTGGTGTCTGGCCCGATCATCCCTT 1586267 29 96.6 32 ............................T ACCCTTGACCAAGTCGCCTTCCCAATGTCCTA 1586328 29 96.6 32 ............................T TGTTGGGCTTGATAGATTTTCAATCGTGGTAG 1586389 29 96.6 32 ............................T TTATACCGATCCAGGATATTCGGGATCGTCTT 1586450 29 96.6 32 ............................T GACTTACTGGTCAAAGTAGGCGTTCAAGATGG 1586511 29 100.0 32 ............................. ACAGCCACAATCATGAACGCCGCTAAAGGACT 1586572 29 96.6 32 ............................G TTAGCAATACTGATCTAGATATTTTCTGGCAA 1586633 29 96.6 32 ............................T GCAAGCGTGGTGGGAACGGAAAAGAACGGTTT 1586694 29 100.0 32 ............................. CATAAACGCCGACATCTTGCTGGTCGTGTCGT 1586755 29 100.0 32 ............................. GCACGTCCGGATGAAGGTATGGTCTTGCATGA 1586816 29 100.0 32 ............................. TAACGATGGACACCCAACCAGTGCTAGTCGGC 1586877 29 100.0 32 ............................. GTGAGGGTATCTTTAAGCATGTCAATTTCTTT 1586938 29 100.0 32 ............................. ACTGTTTGATAGTGTCGAGGGAGTCTGGCCAG 1586999 29 100.0 32 ............................. ATCCCGATTTGACCATTCGGCAAGCGGTACAT 1587060 29 100.0 32 ............................. AACGAGATGGGCAACAAGATGGACGAGGTAAA 1587121 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.6 32 GTGCTCCCCATGTATATGGGGGTGATCCC # Left flank : GCGACAGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAACAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCATGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGTTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TCCCTCTTTGTCCGGGAGTGTAAAATATTTTGTGTAAATTGAATTGAAAAAGGGAAAGCCTTCCCCGTATGATTGAAATCGCCAAAAACCAATCAGAATACGGAGGCTTTCCCCATGAACTAGTTTAACAACCTGAAATGTCAATTTAAGTTAGAAAAAAAGTTGTCGTTGATCCTTTGTGATATGTTCCATAAATACCTCATAAGGTGTCCGATAGTCTAGTGACTTTCTTGGAATTCGATTCCGCTTACTCATGAGCTGGTTCACTAACTCATCTGGAAGGTTGCGTAAGTCACGATCCTTGGTCAAGCCGTCGCGGCGAAGAAGGCCATTGTTGTTCTCGTTGAGCCCCCGTTGATTTGGGGCACCAACCTCGGCGAAGTAGGTGTGGATGTCAAATTGGTTGGCAATCTCCCGCCACCCAACGAACTCCTTCCCGTTGTCAAAGGTGATCGACTTGAAGAAGTGGCGCGGAAACTTACTTAACCATTCACTTAGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1871004-1870247 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034099.1 Limosilactobacillus fermentum strain LMT2-75 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1871003 36 100.0 35 .................................... ACATAATCTGCTAGACTGTCATTTGCCTTAATCTC 1870932 36 100.0 35 .................................... CGTACCAACTTCAAAGCGGTTGAAATGCCGATCTT 1870861 36 100.0 37 .................................... GATCTACCGGCCGAATACACCACCACGAAGACGGAGA 1870788 36 100.0 39 .................................... AAAAAGGAGTATGAAGCACGGTGCAAAGCCTTGGAAAGG 1870713 36 100.0 38 .................................... GGGTGGTTGCTTCCTTCCAATCGTCTAAATTGCCCTCT 1870639 36 100.0 36 .................................... AAATACAAGTATTTCCACATTTACCCCGACAAGGAT 1870567 36 100.0 35 .................................... GAAGGTATTAATAAATACAAGTATTTTCATATCAA 1870496 36 100.0 36 .................................... TTACTCACCCCGGCGAACCAGGGGCGGCGAGTTGGT 1870424 36 100.0 35 .................................... TCTAATGACGAGTTACAACAGTTAGCTATTGACCT 1870353 36 100.0 35 .................................... GTTTTAAAGGAGGCGAGGTAATGACTAGCACTGAA 1870282 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 11 36 100.0 36 GTTTTCGTCTCCTTCTGGCGGAGATCAGTTTATATC # Left flank : CCAACATAATCACACATACCATTGATGGAAGGGTGGGATTCCAAAGCGTGCTGAACGTCCATTTCTTGGTATACCTTTTCGGTAGTTACTTGCTCAGAATCCCGATTGATTTTTTTAATACTTCGATCGCTCCTTCAGCGTCACGAAGTTGACGCTTTAGTCGTGCAATCTCCTTGTCCTTATCGCTGGCAAAATTACCGGAGCCACGGCCAAACTCCCCAGTTTCAGTAAACAGCTTAATCCATTTATGTAATGTACTAGCCCCAATACCTAGATTCTTACTTATTTCATTCATGGTCATGTGATCCTTGTTATCTAAGTAATACTGAACGGCCTGTTCCTTAAATTCATTGTCATAACTGTGCTTCGTCATTATTTGATCCTCCAATTTACTTCCTTAATTATACTAAATCAGAGTCTCTATTTAACTTGTACACTTTTTATTCTAGGCCCAGTTTATATCGATCGCTACTACGAATAGGAGATAAACATGAACGAGA # Right flank : CGATCCTGCTAACTTTCTTGCTAAATCAAGGATAACTTGACATTTTGATGCCCATAATTCGACCAGGTAGGTGCTCATTCAAGCCTCTCTAGCCCTTTTTCTGGACATTGTCAATTTCGAATATTAACTCTATATATTATAACTTAACTAGTTCAGAATTGAAATTACAATTCCTTGATTTTGAACCCACATTTTCCCATTTCGTAGAGATTTTCGTTATTAATAATGAGAACGTGTCGTTCAAATAAGCCATCTTTTTTAGGAGTCTTATAGCGTACTATCCGGCTCTTGGTTAGCTTCAGGGCACCATTAAACTTCATCTTCATTTTTCTTGGAGTTTGACGTCGAATCCCTTCAATATCAACATGTTGATGGTCAACTTTGCTCCATAGACCGCTCCCTGCTCCGAGGTATATGGGTGCTTTGTAATTCCCCTGAATGTATTTAGAGGGAAAAGCAGAAAGGAAGGTTGGTGCATAATTCCGTTCGTAAAACTGTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTTCTGGCGGAGATCAGTTTATATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 1872363-1873119 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034099.1 Limosilactobacillus fermentum strain LMT2-75 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1872363 36 88.9 36 .GACC............................... CTCTCCTTAGGTTTAGTGAAGAAAAATTGGTAACCA 1872435 36 100.0 34 .................................... GCCACATTTCTAAAATCAATTTCTTGTAGGTAAC 1872505 36 100.0 38 .................................... GAAGATCTCTGATGGTGTGCTTTGCTTCTGTTGGAATC 1872579 36 100.0 36 .................................... AGCTTTGGAAATTTTCTTAGTTAACCGACTGCTTAA 1872651 36 100.0 37 .................................... ATTTCTTTCTCTTCACCACCATTGTCCCAATATTTAT 1872724 36 100.0 36 .................................... GTGTTACATGTTGTCGATTCATAACATCTAGTAGTC 1872796 36 100.0 36 .................................... AGTAGGGAGCGGCTTTATCTCTAACCATACGTTCCT 1872868 36 100.0 38 .................................... CGTACACGCATTTGCGTTGGCGTGGTGCCGTGCTTTCG 1872942 36 100.0 35 .................................... CATTTTATTTATCAACTATACAATTACCCCCTATT 1873013 36 97.2 35 .........C.......................... GTTTCTTCGTTGATATCTTCGTCGTATCCCCAGCC 1873084 36 72.2 0 .....G....A..T....TT......G....T.GTA | ========== ====== ====== ====== ==================================== ====================================== ================== 11 36 96.2 36 GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Left flank : ACGGATTCGTTTATTTAACCAGTATTATGGACTTGTACTCCCGACGGATCATTGGTTGGGACTTATCTGAAACCTTGGAGGTATCGAATGTCATCCCACTTATTGAAAAGACTAAGCACAGTCGCCATATTAGCAAGCCATTAATCATGCACAGTGATCGTGGTAGTCAGTTTACGTCTGAAGCTTACAATCAAGTTACAGCTAACATGACATTAAGCTATTCAAAGAAAGCTTATCCTTGGGATAATGCCTGCATTGAGTCGTTTCATGCCTTGATTAAGCGTGAATGGATAAATCGGTTTAAAATCCATTCATACTCCGAAGCTAAACGACTAGTTTTTCAGTACATTGAAACGTTTTACAACACAGTTAGAATTCACAGTCACTGTGGATTCAAATCACCAAAGCAACTTGAAGATGAATATCAAACTCAAATTCAAAATTTAGTCGTGGCATAGGACAAAAAAGTCTCTATTTAAATTGTCTATTTTATTGACAGG # Right flank : AAAAAGCGAGAGCGTGTATCGAAATCCTTAGATTTCAATACACGCTCTCTTTAGATTTAGGGGCCAAGAAAGCTCGTTGCAGTAGACTAGATATATAATTTATAATTGACGCATAGGTTATATTCGAGAGAAAGAAATTAACACCAAATGAAATAGTAGGATGTTGATTTATCGGCAGGTCCTTACTTCGGGAGGGGTAAAGGGTGAAGAATATAGTTTATGTGGAGAATGAATGTTTTGTTGGTGTCACTAAAGAAGGGTTAAAATTTTCAAATATCAAGACAAAGGAAAAGAAGTATCTGACCTTTGATGACATCGGTACGTTAGTGTTTGATAATAGAAAGTGTTATCTATCGGGGTCAAGTCCAAAATGTTGGTGTAAATTAAATTCCGCGAATTTATCATTTCACAAGCTTAAGCATACCGGCTTCTTCTGAATTGTCATCTTTTTCAATCCCGTGGTAAACGATCATATTTAAGTACCGTGGACCAGCAGCCCA # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 2162010-2160655 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034099.1 Limosilactobacillus fermentum strain LMT2-75 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2162009 36 100.0 30 .................................... ACCTGGCAAGCATTAACCACATCAGCAATC 2161943 36 100.0 30 .................................... CCTTTTCACACGCTAGACGGGCAGGATTAG 2161877 36 100.0 30 .................................... GGCGGCTAAGATTTCATCATAGCCATTTCG 2161811 36 100.0 30 .................................... TAGCTTAGATCAGTTAGAAAATCATCACTT 2161745 36 100.0 30 .................................... GTACATTAAGCCAGTCGGTACACATCAATG 2161679 36 100.0 30 .................................... TAGTCGGCAAGGAGCTAGGCTGGGAAGTTG 2161613 36 100.0 30 .................................... ATCCAGAGCGAGGAGGAAGACTAGTGGATA 2161547 36 100.0 30 .................................... TTAAGATTTGATGCTTCCTCGAACCAGACA 2161481 36 100.0 30 .................................... CAGAGGATCACAGCCTAATGGGCTTTGGCG 2161415 36 100.0 30 .................................... TTTGCGCTTCTCATTGAATGGCATCACCAA 2161349 36 100.0 30 .................................... CGTAATTTATGTGGGCCAAACGATTCGAGT 2161283 36 100.0 30 .................................... AAGATGAAAGGTATCGTTATGTCACGGAGG 2161217 36 100.0 30 .................................... TTAACCCGCTGAAAACCGCGCTACAAGCTT 2161151 36 100.0 30 .................................... TCAACGGAGGAGATTATGAAGACGATACGA 2161085 36 100.0 30 .................................... ACTGTGTTGGTAGTTGCAAAGCCCTTGCTG 2161019 36 100.0 30 .................................... CTTTAAAACTGTCGGCAAGTTCTTTACCGG 2160953 36 100.0 30 .................................... TTAATGAGCCAGGCTACAAAGGTGCACACG 2160887 36 100.0 30 .................................... AAGGTGCTTGTAGGCAACACAACGCTTGCA 2160821 36 100.0 30 .................................... TCATCGTGGGAATACCTCAGGCCTTCACAA 2160755 36 100.0 30 .................................... GACCGGAAAAACCGGCGACCGGGATAACCG 2160689 35 86.1 0 ...........................-.TT..A.T | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.3 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAGCTTGATAGCTACCAAACAGCACTTGATAAGATGATTGTCAAAAATCTTAGCATTCAGAAACGAGATCGGATGAATGACCTTGCTCGTGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGTGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGATCGTTAGTTTTTGATGAGAAAATAACG # Right flank : TATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGAGGGAAAGGTAAATGTTTTCACGTTGGTAATCTGACGGGAACTTTAGCGGGCGATGTGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTACCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCACCGGATCGGCAAGGTGGGGTACGCGATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAAACAAGACGTTTGGATTGAACGCCCTGACATAGCAAGCTTCGGCTGGCTATTTTCCGGGCCAAGCAAGTTGCTACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCTTGGAAACCGCCGAAAATGCCTTGGTTTATGCTGAACAGTTGGTGGCTGACGGACGGTCCGTGATGGTGGCGCCGGATT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //