Array 1 785165-784394 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_FODM01000001.1 Streptococcus equinus strain ES1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	====================================	================================	==================
    785164	    36	 100.0	    32	....................................	ACAAACACCCAAGCATTACCAGCCATGGTAGA	
    785096	    36	 100.0	    30	....................................	TAATAAATTTGCTAGTGTAACTCTTAAAGA  	
    785030	    36	 100.0	    30	....................................	TCATTCGTGGGGAGTCTGATGATGAAGACG  	
    784964	    36	 100.0	    30	....................................	CTTTTAATCGCGTCTTTTGGTTAGGAGGTT  	
    784898	    36	 100.0	    30	....................................	TTTTGTGCGGAACAAAATTGCAACGTCGTT  	
    784832	    36	 100.0	    30	....................................	CCGTAACTTAAAATCTGCCGTTGAAGGTCT  	
    784766	    36	 100.0	    30	....................................	CGAGGCTATCCGCGTTATTTTTAATACATA  	
    784700	    36	 100.0	    30	....................................	AGAAATAGAGGATGCTTATGGGATTGGTGT  	
    784634	    36	 100.0	    30	....................................	GACACATAAGAAACATTTAAAGAGCTATAT  	
    784568	    36	 100.0	    31	....................................	CAATCCAACACCACAAGTTAACTAATAATGA 	
    784501	    36	 100.0	    30	....................................	GATTTGAATATTGGTTCGACAATCGTTGAT  	
    784435	    36	  88.9	     0	....................T...AAA.........	|                               	T,AAT,TA [784399,784401,784405]
==========	======	======	======	====================================	================================	==================
        12	    36	  99.1	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                                	       

# Left flank :   TTTTCACAAAGAAGAAGGCGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGGAACCGAAGGTAAAGATATCGAGGAAGCTATGAAGAATGCTCGTGAAATGCTTGAGAGTTCGCTAGCTGCGTATCTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAGTGAGCTAACCGTTGATGATGGTTTCATTACTCTGATTCAAGCTGATCCTTCACCGTATTTAAAGAAGACAAAAGCTATTCGTAAAAATGTTACAGTACCAGAATGGTTGGTCAGATTAGCTGATCGTGAGCAGGTAAATTATTCTGAGGTTTTAACAAAAGCTTTGGAGAAAAAGTTGCAACTATAAGTTTTAAGAATGTTCAGGAACGTTGAAAAATCAAGGTTTTTAAGGTATAATAAAGCTAATATTATGGAGCTATTCGAGGCTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAGATTTCGTGAGAAAAATTGGTCCACGAG
# Right flank :  TTTAGTGAAAATCACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTAAACCGCGGACTTGTTGGCGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGCCCTTTGG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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