Array 1 406-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASJR01000033.1 Chitinivibrio alkaliphilus ACht1 contig00033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 405 35 100.0 41 ................................... ATATTATCCAAGCGAGTCTTATAATCTGCACCATAACGCTT 329 35 100.0 38 ................................... TGGCAATGTATGACATGCTTTTTCTCCTTTGTTGAATT 256 35 100.0 39 ................................... TCTACAAACTCCATGGCCAACTCCATGGCCATTTCGGTA 182 35 100.0 40 ................................... TGTAGGTTCTGGTTCTGGGACAGGTCCTAATTCATCAGAA 107 35 100.0 37 ................................... ATTTCGTACCTATTTACTATAGAGTCTATTATAGATG 35 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 6 35 100.0 39 ATCAGAATGAATACCTTGGAATAAAGGATTAAGAC # Left flank : GGCTTTCACGGGTGGCGAGAATCCTTGAAGATTCGGGTATACGATATCAGAAATCGGTTTTTGAACTCTATATAAAACTGGGGCAGCTCCTTAAAATAAAACAGGATATTCAGGCTGTGATAGATGCGGAGGAAGACAGTGTGATTGTTATTCCTGTGTGTGAGAAAGACTGGCAGAAACAAGTGAAATATGGTAGTAATGCGGGGATTAAAGAAGATGATGGTACCTTTAAACTTCTGTAAGTTCGGGAGGTATACATCATGTATATTATAGAGAATAGGGCATTGTTCTTTGATTTTTGCACAAACCCCGATGTACCCACAGAATGCCCGTGTAACCGCTGAGGTTTGTGCATGTGTTATACTATGCTGATTTGCAGTTTGATGGGATGTTTTCAGATTCTTTGTAATGTGAAATCTACCCTGTTCTTTGAAAAACATGTAACGGTTTGTGCAAAGTACATATTCAGGCCTCTTCAGGAGGCGGATACAAAGGATGCT # Right flank : C # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCAGAATGAATACCTTGGAATAAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 43-205 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASJR01000001.1 Chitinivibrio alkaliphilus ACht1 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 43 32 100.0 34 ................................ ACACGCAACAGATAGTGCGTAAGACGATTTTCCC 109 32 100.0 33 ................................ TCAAATACTCTCATAAGATCTCCTTGTTTTGCC 174 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 100.0 34 GTCGCCCCCTTCGCGGGGGTGTGGATTGAAAC # Left flank : GGATTGAAACCTACAACTGCATTACCACTATTAACAAGATTAG # Right flank : CATTGGTATGGGCATATACAGCCGGCTTATTTAGCGTCGCCCCTTTTGACCACCTATGATTTGTTCTGGATGGTAGATCGTATCCACAAAGTACTTGCATACTCATAGAGGCCAAGGTATACTCTGAGAAAAAGAAAGGACGATCGATGATACCTGCTCTTAATCCTCTCGTGCTAAACTTGAAAGAGTCTGCCACTTTGGCAGTAAATATTGAAGCCCGTCGCTTACGGGATATGAATAAAGAAATTTATCATTTTGGATTTGGCCAGTCACCCTTTCCGGTACCGGAGATACTCCGACGCGGTCTGGAAGAACATTCACATAAAAACCATTACCTTCCAACGCGGGGATTGCCCAAACTGTGTGAAGCTGTGAGCAGCTTCTACCAAAAACAATTCAACTATACCTTTACACCGGAAGATGTTTTTGTTGGTCCCGGCAGTAAAGAATTAATCTTTCAATGTATTTACCTCATTGAAGGTCCCCTTTTGGTACCGGCT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCGCGGGGGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 42-906 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASJR01000070.1 Chitinivibrio alkaliphilus ACht1 contig00070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 42 35 100.0 38 ................................... CAGCTATGTGCTTGCTCACCCTCTCTCTTTCGTTTTCG 115 35 100.0 43 ................................... AACTTCGACAGGATACCGATGAACGGGTTCGTTAGCATTTGGA 193 35 100.0 42 ................................... GCCACTTCTGGCGATGCTGGGGGCCGTCATTCCATCCAGTTT 270 35 100.0 40 ................................... GCCCAACCCTTCTGCTACGAAATCATTGGCAATGGAGTTG 345 35 100.0 43 ................................... CTTGCGGATGAATCCACCGCAACTTATAGAAACAAGCTCATCT 423 35 100.0 40 ................................... CGTGCCGGCGTCCCTCGTATGTGATGGTACCCTCCATTAT 498 35 100.0 42 ................................... TTTCCTTGGGAATTAATTCACCGTTCTTTACCTGTGTGTAGG 575 35 100.0 41 ................................... AACACCACTGCTGTGCCAATGTTTTCCGTGCCGGCTTTTTC 651 35 100.0 36 ................................... ACCCCGTTTTTCCGGCGCACCCAACCGTCGGCGCGC 722 35 100.0 40 ................................... TGGGCGTAATAGCCCAAGCCTTCATTGACGAATTCAATTG 797 35 100.0 40 ................................... TCTCTCTGAATCCACTGAATGGTGTTTGGGACTACAAATA 872 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 12 35 100.0 41 ATCAGAATGAATACCTTGGAATAAAGGATTAAGAC # Left flank : TTATTCTAGATTTTAATTCTTTATTAAACTCATCCCATATCA # Right flank : GGTAAGGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCAGAATGAATACCTTGGAATAAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 336-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASJR01000087.1 Chitinivibrio alkaliphilus ACht1 contig00087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 335 32 96.9 36 ...............................A CGCTCATTTTTTCGTACCGTACCGCTTATAGATTTC 267 31 96.9 34 ....-........................... GTTCAATTTTCGGCATCTTCCACCTCCGATAATT 202 32 100.0 36 ................................ GATCAGCCCCGGACCTGCTCAGATATCCCGCTTCCC 134 32 100.0 34 ................................ TCTTCCTTCCCTCCGTGGTTATACCACAGTGTTT 68 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 98.8 35 GTCGCCCCCTTCGCGGGGGTGTGGATTGAAAC # Left flank : TTAGGGCTTGGGCTTCTTGGGGAGCCGCTTACG # Right flank : CGAACCCCTTCGGGGTCAAGCCGCTCCTGAACGCCTC # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCGCGGGGGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1937-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASJR01000055.1 Chitinivibrio alkaliphilus ACht1 contig00055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 1936 35 97.1 40 ...........................G....... TTGGGGATTATCTCCCCGTTCATGGCCCGTACGTAGTACG 1861 35 100.0 36 ................................... GTTATCGCGGTCTGTATTTTTCTGCGAGATACACCT 1790 34 97.1 40 ......................-............ GGAGCAAGGTTCTTCCCTGCCTTTTGACTCCGGACACCAC 1716 35 100.0 41 ................................... CATCTCTTCCTGCGGAAGAAGAGACGTGCAACCCCCCTGCG 1640 35 100.0 40 ................................... GATCATATGGATACGCGTTCTCAACCTCGATACAACCAAT 1565 35 100.0 42 ................................... ATTTAGAAACTCTTCTAAAAATTATTACATTCTATAGGGGTG 1488 35 100.0 40 ................................... CTATTTCTTTCAAGGGTAACTAACATTTCATGGACAGGGA 1413 35 100.0 43 ................................... TAGCCCAGCCCCTCATTCACGAACTCCATGGCCAATTCTGTGG 1335 35 100.0 39 ................................... TCTTCTTCTTCGGCCCAAAGCCCTTCGAAATTCATTGGG 1261 35 100.0 42 ................................... ACTACTATATCCCCTTGATTGAATCCACTATGATTTTTTTCA 1184 35 100.0 38 ................................... TTCCTCCTCTGTTGCCTTTTGTCTTACATCTGCTACAA 1111 35 100.0 41 ................................... CTGGTCCATACGTGCAAACGATATACTCTTCGCTCGGTATT 1035 35 100.0 39 ................................... ATGTCAGCCCCCACTCCCTTGTGCCCGATCTGGTATCTA 961 35 100.0 42 ................................... TTCTCCGCAATTCTCATGTCAATCTTGAATTTTGGCGGCCAG 884 35 100.0 39 ................................... CTCTTAATGAAGTCAATTACTTCATTAATTTTATATTTC 810 35 100.0 39 ................................... TTTGCGTACTCATCACAGATTTCTCTTACTGTTTCACGG 736 35 100.0 38 ................................... ACGCACCTGTCAGTCGTGTGATCAGCCCTTCGTCTATC 663 35 100.0 40 ................................... TCCCCGTTAGCCGGTGTTGCATAGAGCCACTTGTCGTTCA 588 35 100.0 42 ................................... GTACGCACGGTATCGAGATGGTATCCAGTGGTTTGGGGGCGA 511 35 100.0 41 ................................... ATGAAACCTGTCCGGGTCCGGTGTCAAGGGTAGCCCATCCC 435 35 100.0 42 ................................... AATCACCTCACATCCGCTGAAATCAGCCGGCAGTGACGCCGG 358 35 100.0 40 ................................... TTCCCGTTTATCACGTCCTTATAGTACGGGCGGAACCGAG 283 35 100.0 42 ................................... TTTGCTTTTGACAATTTCATAATACTGTTCCTTAGTTAATGT 206 35 100.0 37 ................................... TTCAACTGCAATTTCAATTTGATCTTTAATTTTTATA 134 35 100.0 39 ................................... CTAAGAGGTTTCCCACTAAGGATGCCTCTTCAATTTCTT 60 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 26 35 99.8 40 ATCAGAATGAATACCTTGGAATAAAGGATTAAGAC # Left flank : ATTCTCTGCAACCCTCATGTCTATCTTAAATTTCCGGCG # Right flank : CCCTGTGAACTTACCGTTCACCACGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCAGAATGAATACCTTGGAATAAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 47-209 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASJR01000098.1 Chitinivibrio alkaliphilus ACht1 contig00098, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 47 32 100.0 35 ................................ CTCGCTCCACTGTTCCTCAAATCGTGCACGCTCTT 114 32 100.0 33 ................................ AATACCCGCATCGCCAGACGTCGTGTCCCATGA 179 31 96.9 0 ...............................- | ========== ====== ====== ====== ================================ =================================== ================== 3 32 99.0 34 GTCGCCCCCTTCGCGGGGGTGTGGATTGAAAC # Left flank : TGGATTGAAACGCTGTCATGGCAAGATTGAGCCCGTGCTGTGCCTTG # Right flank : | # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCGCGGGGGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 310-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASJR01000010.1 Chitinivibrio alkaliphilus ACht1 contig00010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 309 32 97.0 35 ..............-.................. GGAACCCCGAAGATCAAGCGTTTGTATACTACGGC 242 32 97.0 36 ..............-.................. ATCAAAACCGCCCGGGAAAATCCGAGTGACTCACGG 174 32 97.0 35 ..............-.................. TCTGCCGTCTCGCAGGGCTCTGTATAGCCACGCAA 107 33 100.0 34 ................................. AATTAGCCCCCGCACCTGCTCTGATATTCCGCTA 40 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 98.2 35 GTCGCCCCCTTCGCGGGGGGTGTGGATTGAAAC # Left flank : AGTTTTATCCACCCTTTATATGGAGAAGCTGATATGTTGGTGGTGGTGACCTATGATGTACAGACCGAAAGCCTTGTGGGATCCCGGCGTTTGAGAAAAATAGCCAAAACATGCGAAGATTTTGGACAGCGGGTGCAATACTCTGTATTTGAGTGTGATGTTGAGCCGGCACAATGGGAAAATCTCAAGGCTCGTTTATTGAAAATATATAAACCCTCCGTGGATTCTCTTCGTTTTTATTATCTTGGCGCAAATTGGAAGCGTCGTGTAGAACATTTTGGTGCTAAAAAAGAGATTGATCTGGATGATGCGATAATATTATAACGCTAACGTGTAGATTACATCTAACTACCGGGAGGGTAGCGCTCTTTGAAAAGCTATGATATTCTTTGCGATAGAACATACACTGATAAATGAATTTTTTTATTTAATTGGAACAAATGTATATTAGCGAATAGAGCTTCTTTTTGTCACTCCCTGAGAGTGATTTGAAGGAGACA # Right flank : CGAAGTTA # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCGCGGGGGGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCAGCTTCCGCGAGGGGGCTGTGGATTGAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //