Array 1 1015568-1016876 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033345.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN076210 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1015568 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 1015629 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 1015690 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 1015751 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 1015812 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 1015873 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 1015934 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 1015995 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 1016056 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 1016117 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 1016178 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 1016239 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 1016300 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 1016361 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 1016422 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 1016483 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 1016544 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 1016605 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 1016666 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 1016727 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 1016788 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 1016849 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1033500-1036397 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033345.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN076210 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1033500 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 1033561 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 1033622 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 1033683 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 1033744 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 1033805 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 1033866 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 1033927 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 1033988 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 1034049 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 1034110 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 1034171 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 1034232 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 1034293 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 1034354 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 1034415 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 1034476 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 1034537 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 1034598 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 1034659 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 1034720 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 1034781 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 1034842 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 1034903 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 1034964 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 1035025 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 1035086 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 1035147 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 1035208 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 1035269 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 1035330 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 1035391 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 1035452 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 1035513 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 1035574 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 1035635 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 1035696 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 1035757 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 1035818 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 1035879 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 1035940 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 1036001 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 1036062 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 1036123 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 1036184 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 1036245 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 1036307 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 1036368 29 96.6 0 ............T................ | A [1036395] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //