Array 1 143787-145713 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHH01000002.1 Bifidobacterium pseudolongum subsp. globosum strain 1520B Contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 143787 29 100.0 32 ............................. GACCAGTACGATGCGATGCTCGCATTGTGCAA 143848 29 100.0 32 ............................. CAAGTGCAGTTTAATGGGCTCTGGCAGTCCAC 143909 29 100.0 32 ............................. TGGCGAGTATTGTTGCTTGTCTTAGTACGCAT 143970 29 96.6 32 ..........T.................. AATAAATTTTCGACAACCAAACGGCTTCTACG 144031 29 100.0 32 ............................. ATCTGGGAGGCCTGCATCCACGTCGGCAATGG 144092 29 100.0 32 ............................. TAGCACGTCGGACTATCGTCCCATCCATACGC 144153 29 100.0 32 ............................. CTCACCTTGGAGCGGATCTGCTGTTCGGTCGT 144214 29 96.6 32 ............................C CCAGCCACTTGGGTCGTCTCGTTCGCTGCATC 144275 29 100.0 32 ............................. TTTTGCGTCATAGACGCTGCCGCCGACTGTTT 144336 29 100.0 32 ............................. AACCTTAACAAACGGATTACCAGAGGAATCAG 144397 29 100.0 32 ............................. GAGCCGATCATGGCCACACGAATGAGCATGCG 144458 29 100.0 32 ............................. AATCGGGTGCGTTTCCTCAACAACGTTGGAAT 144519 29 100.0 36 ............................. GCCTCGACCGCGAAGAACCCTGCGCGGCGCTCGCCA 144584 29 100.0 33 ............................. CCCCCCCCGGGGACGATCATGTCACCACTAAAC 144646 29 100.0 32 ............................. AGCCTGCCGGTGGGTGTCGCGCTCACCGACGA 144707 29 100.0 33 ............................. ACACGTCCGCCGTATCATGCTGATTCACCGTCC 144769 29 100.0 32 ............................. CCTTGGTGACACCCTTGAAAGGTGTGCATCAT 144830 29 100.0 32 ............................. TGCTTTGATGATTCGCGCGAAGGAAATCGAGC 144891 29 100.0 32 ............................. GGCGGCATACATGTCACCGACCCGACCGGCGC 144952 29 100.0 32 ............................. CGGGGGCTTCTGGATAAATTTCGGGGCATGGA 145013 29 100.0 32 ............................. CCGCGCGGTTTTCTGTCCTTTTTCGCCTGCTG 145074 29 96.6 32 ............................T GAGCGGGTGACCGCGAGATCTGGCTCGTCACG 145135 29 100.0 33 ............................. GTGCGCCAGCGGTGGGCTTGATGCCGCGCAGTT 145197 29 100.0 32 ............................. CACGAGGTCCAACAGTGGGGCCGCGATCATGA 145258 29 96.6 32 ............................A TCGTGGTACGCAACACTCTCACGGGTGAACGC 145319 29 96.6 32 ........T.................... CAGCCGGACGAGGAGATGGTCACCGTGAGTGT 145380 29 100.0 32 ............................. AACAACGGCAAAGAGGAATACTCGATGGCGTT 145441 29 100.0 32 ............................. GGCGCGCAAGGCCTCCAAGGTCTCAAGGGCGA 145502 29 100.0 32 ............................. CGCAATCCCGACGATCGCCGCCGGCTTCGGCG 145563 29 100.0 32 ............................. AACGGAGCCACGCTCGACACCTACACAGAAAA 145624 29 100.0 32 ............................. CGCCTGGTCAGCAACACCCATCCGTGCATGCA 145685 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 32 29 99.5 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : CGGTCCGCGCACGGCGTCGAATTCGCGGCGTTCTATACAACAGCCGCCGACCTGTACCCGGACCGCGAGCTCAACGCGTACGAAATCAACCACGTGCTCTCCACGCACTTCAACGACGTGCGTTTGAAGAACTTCATCGAGATGCGGCATTGGGACTCACTGCCGATCGAACGCGCGGAACTGCTCACGCAGATCGTGAGCAACCTGTTCTACGATGTGGAGCGCCGAACCAGCCTCGAATCGTACTTCAGCGGACTGACCGGCGAAGACGTGCACGCCGCAAAGGCCGTGCTGCAGGCGCGCGGGGGAGAGGCGAAACCCTACGACCAGCCGATGGAGTACTGGGCCGAGGTGCTGGGTGTGGGCGATGCGCTCGCCGACGTGCCGGGCGACGCGAAGTGGCCGGAGGTGCGGCAGGGGTAGGGGAGTATTATCCTAGAAGAGTCCTGCAGGTGCGGGAGTGATCCGAGCATCGAAGCGGAATACTGCATCGACCGTCC # Right flank : GTATGCATGTTGATGAACGGAGGTGATTGACATGCGTGTCGCGGAGAAAATGACGTTTGAGGACCTTGTCGATTGGTATGTCAGACAACTCGTTCTTTATGGGGATGCGGAAAACGCGGAGATCATCAGGAATGCTTTTGCATGCGGTGAGTCGACGGTCGCCTTGGATATGGCCGTAATCCGGTCAAAACAGTTGAACATCATTCCCGAACGTCATATCATCAAGCGATCATGCGAATTATTGGATCCCGATGATGATGGCATGGAAATTTGCAAGCGCTTTCTTACCTCGAACGGTTTGCCCCGCATGCGAGAGGACAACTGTTGACGGGAGCGATATCATTATCGCATTCGGCAAAAAGAAACGCGCCGTCAGCATCTATCCACGGAATGAGGATTATCTATGCACAGAGGGACAACACCTGATGACCTGTTGCTGGAAAAGTTCGTGAAAATCCTTGAAGATCACAAACGGTACAAGGAAGCAGAACTGTTGGATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //