Array 1 340548-341917 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRL01000009.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_64 contig0008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 340548 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 340609 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 340670 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 340731 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 340792 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 340853 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 340914 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 340975 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 341036 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 341097 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 341158 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 341219 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 341280 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 341341 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 341402 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 341463 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 341524 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 341585 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 341646 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 341707 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 341768 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 341829 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 341890 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 358541-360584 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRL01000009.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_64 contig0008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 358541 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 358602 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 358663 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 358724 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 358785 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 358846 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 358907 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 358968 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 359029 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 359090 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 359151 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 359212 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 359273 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 359334 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 359395 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 359456 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 359517 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 359578 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 359639 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 359700 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 359761 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 359822 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 359883 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 359944 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 360005 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 360066 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 360127 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 360188 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 360249 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 360310 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 360371 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 360432 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 360494 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 360555 29 96.6 0 ............T................ | A [360582] ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //