Array 1 200944-200460 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFUR01000005.1 Actinomyces sp. oral taxon 175 str. F0384 Contig97, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 200943 36 100.0 28 .................................... TGGTTTTCAGGGCCTCGTCGAACTCAGG 200879 36 100.0 28 .................................... CCGGCGGCAAGCTCCACGCCTACGTCGG 200815 36 100.0 28 .................................... TGATGGTTCTGCTGGTGTTGCAGCCGGT 200751 36 97.2 28 ......................A............. GTGGGTAGGCGCAGTGACGCTGACCCCT 200687 36 100.0 28 .................................... GTCAGGCGTTCTCCGCGTCCAGCCGGAT 200623 36 100.0 28 .................................... GGGGTCCCGCTGTCCACCTGTGTGTGGC 200559 36 100.0 28 .................................... GGCGTGGAAGGCCCGTCGGCGGCCCTCG 200495 36 97.2 0 ..........................A......... | ========== ====== ====== ====== ==================================== ============================ ================== 8 36 99.3 28 GAAGTCTATCAAGGGGTCTGGTGACTGAATCCCAGC # Left flank : CATTCCGTGACGACGGCGCTACGCTCCCAACCGTCTTGGAGGAGCTGGCTCAGCACTTGGGTCAGTACTGTGAAGGGGACCGAGCCCGCTTGGATGTCCCGTCGTGGACCGGTCCTAGGCATGAGTCCTGATGGCGGATGATCCAGTGTGGTGCGTGGTCATGTTCGATCTGCCGGTGGCGACGAAGAAGCAGCGCAAGGAGGCGACTCGTTTCCGGCACCTTCTCCTGGATGAGGGTTTCTGGATGCTCCAGTACAGCGTCTACGTCCGTTACTCCCCGACCGTCGCCGGCGAGCCTCGCAGGGTGGGCTCGATCAAGCGTAACCTGCCACGCGGCGGTGAGGTGAGGATGCTGTACGTCACCGACCGCGAGTGGTCGCGCACGCTCTGTTTCCGCAACGAAGAGCCCGTTGAGGCTGAGTCAGAGCCCCAACAACTCATGATCTTCTGACCTCTGACGAGGTGTTTACACTGGTCAGACCCCCTTGACAGACGTTTCA # Right flank : GGCAAGGTGACATGTGCGCAGGGCAGCGGGGGCTCCGGCATCGTCGGGCAGATCCGGTGCCGGCCGACGACGCCGCGGCGCGCCTCGGTCTGGCGAGCATGCGTCCCTGGATGGCGCCGGGGGGACGGTGGGGGTGGGTCAGGTCGTTCAGGCCGCGCGCGAGTCCACCGCCGCCCTCACTGCATGAGCCACTCCCTCATCGAGGACTTACTTTCGGTACCAGGACTGCGCTGTCCCCCATACGACTGCGCGGAGATCCCAGTAGCCTGGAGGACAACGTAGTCCTCGATCGGAAAGTACGTCCTCGGTGGCGTCACAGGCGACGACAACACGACGGGCGGCGCGCCAGCGGAGAAGAGCTCCGCCAGCGCACCGCCCCGGGAAGGAAGGTGGGGGCGAGGGCGCGCCATCCGCGCACCTCAGTCTCGCCCCCCACCCGTGAGTCAAGCCGCTCGCGCAGCCTCAGCTCGTCGAGCCTCCGCTCTGCGCGGCGCCCGAAC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAAGGGGTCTGGTGACTGAATCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 261933-260954 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFUR01000001.1 Actinomyces sp. oral taxon 175 str. F0384 Contig96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 261932 37 97.3 37 .......................C............. ATTTGCTCCTGGGTATACACATGGAGTCTATGGAACC 261858 37 97.3 38 .......................C............. GTTCTCTGTGTACGTCATCCACCTGAATGACTCGACGA 261783 37 97.3 34 ...........................A......... AATCAGGCGTGGTGATTGGCGGGCTGTGTGGTGG 261712 37 100.0 35 ..................................... TCTCCGGTCCGGCTCGCGCCCCAGCATCCTGGTCA 261640 37 100.0 37 ..................................... TCTCTGCTAGGCTGCCAAACCCATACCCTGTATAGAT 261566 37 100.0 37 ..................................... GCATTGCGCCCACCTCCTTCATTGAAGATCGTGAGGT 261492 37 94.6 34 .................................G.G. AGGGTTGATGCGAGCGGCCTCGACGTAGCTCTCG 261421 37 97.3 35 .............T....................... GCGAACAGTGCGACGGTCCCGATGTCCTCCGACAG 261349 37 89.2 38 ..............C.....GC...........G... TTGTTGGGCCGAATAGTAAAGATCAGCGACGCTGTAGC 261274 37 100.0 37 ..................................... TTCAGTTCTCAGCCTCATCACAACCAAAGAAGTGTTT 261200 37 97.3 33 ..........C.......................... GCTCTTTGAGACGAGCCTCTGAGCTAAAAAGCT 261130 37 100.0 37 ..................................... TACTCGATAACGTCGTTGGTCTGCATGGCCATCCCTC 261056 36 91.9 25 A..............-..A.................. GTCTCTAGCAGATAGTGGTATTGGT T [261044] Deletion [260996] 260994 37 78.4 0 TAA........GAA.............A...C..... | C,T,CA [260971,260983,260985] ========== ====== ====== ====== ===================================== ====================================== ================== 14 37 95.8 35 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : CCAGCACCAGAAGGTGCATTAAGACGGTTGCCAGGCTTCCCTCGCCAACACTGAGATAGTGTCAGAAAGCACCCAGCATCAGAAGGTGCATTAAGACCTTAGCCAGTAGCTGTGTTGCTACTTGACTCTTCCGTCAGAAAGCACCCAGCACCAGAAAGCCTATTGACGGAACTTACAGTCCATCTTCATCTCCTTAACGAGCTGGACGGACAGGCGGCTCGACGTGGGAAACGCTCCTGACGTCGAGTCCAGAGCCCGGCTCCATCTCCACCGCAGTAGGTTGTGTCCACAGCCACAGTCCGGAACGTCGACCTTTTGGCTTGACGTCGTCGGAAGTTGGTGGCTGGAGGCGCCTGAGGGGGTGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGCTGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCTTGGAAGTGGCGCAACGACGCCACTCCCAGAAGCAGGG # Right flank : ATTTTCTGCCGGCTACTTTGTGCGCCCCAGTCGAAGAATACTGAAGCCCGTCTGCCCAACGACAGAGGCAGAACGTGTCGACAGCTACATTCAGGAAGGTCGTTTTTTGGCTTGACGTCGTTGGAAGTTGGTGGCTGAAGGTGTCTGAGGGGGTGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGCGGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGGAGTGGCGCAACGACGCCGTTCCCAGAGGCAGGGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACTTACTTTCTTCCAAATACTCTGGGTGGAAACGTACCGTCAGAAAGCACCCAGCACCAGAAGCGCCTATTTACGGGGCTTGCCGTGCAGTGGCTGCCAACAGCGCCGAAAAACGGCCGGTCCGACCGCCAGTCCCTTGAACAGGCCCTCCGAGCCGACCCGAACCACCCCGCC # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 262734-262264 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFUR01000001.1 Actinomyces sp. oral taxon 175 str. F0384 Contig96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 262733 37 100.0 35 ..................................... ATGAACTCCTGAGTGTCACTCATTGTTCTCTCCTT 262661 37 100.0 35 ..................................... CTGAAGGTGCTGGCAGACACTCGCGTGGGAACACC 262589 37 100.0 35 ..................................... CATTGTGGTCGCCTCCGGCTCGGCGTTTGTGGGAG 262517 37 100.0 36 ..................................... TTGATTTCTTTGGGTGCGGGGGCTCCATGTCCCCAC 262444 37 100.0 35 ..................................... GGTTGCCAGGCTTCCCTCGCCAACACTGAGATAGT 262372 37 97.3 35 ..................T.................. CTTAGCCAGTAGCTGTGTTGCTACTTGACTCTTCC 262300 37 78.4 0 ........................A.CCT...G.CGG | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 96.5 35 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : ATCGCCTTGGCGGTTCTGACCTTCATCGGCCTGCCGCTGAGCGTGTTCCTAGAGATCTGGTCCAACTGGGAGGCCGCCAAGGGTATCGCGGTCCGCCACCAGCATATCGGTGGCTGGGACGCAGGATGGGGCTGGATTCTTGGCTTCGGCCTTTTCGGGTCACTCCTCATCGGCGGTGGGATCTGGCTGCTCGTTGACAAGGTCGGCGGCCGGGTGGCTCGGCGTGGGAAACGCTCCTGACGCCAAGTCCAGGGCCCGGCTCCATCTCCACCACAGTAGGTTGTGGCCGCAGTCACAGGTCGGAAGGTCGACCTTTTGGCTTGACGTCGCCGGAAGTTGGTGGCTGGAGGCGCCCGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCGGTGCTAGCCGATTCCGCGGAGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAACGGCGCAACGACGCCACTCCGAGAGGCAGGG # Right flank : AACTTACAGTCCATCTTCATCTCCTTAACGAGCTGGACGGACAGGCGGCTCGACGTGGGAAACGCTCCTGACGTCGAGTCCAGAGCCCGGCTCCATCTCCACCGCAGTAGGTTGTGTCCACAGCCACAGTCCGGAACGTCGACCTTTTGGCTTGACGTCGTCGGAAGTTGGTGGCTGGAGGCGCCTGAGGGGGTGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGCTGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCTTGGAAGTGGCGCAACGACGCCACTCCCAGAAGCAGGGGTCAGAAAGCACCCAGCACCAGACGGTGCATTAAGACATTTGCTCCTGGGTATACACATGGAGTCTATGGAACCGTCAGAAAGCACCCAGCACCAGACGGTGCATTAAGACGTTCTCTGTGTACGTCATCCACCTGAATGACTCGACGAGTCAGAAAGCACCCAGCACC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 3 280987-280514 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFUR01000001.1 Actinomyces sp. oral taxon 175 str. F0384 Contig96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 280986 37 97.3 34 .....................C............... CCGTTTGGTCGGCCGCAGGCACAGACATAACCTG 280915 37 97.3 35 .....................C............... CGGCATCTCCAGGACGCCTATACGCAACATGGTGG 280843 37 100.0 37 ..................................... ACTTTCGTACAGCACTAGACCACAGAGCAAGAATCTC 280769 37 97.3 34 .................................G... TCGTCGGCGAGTTGGTTGCAGGGCATCACGAAGC 280698 37 97.3 38 ..................T.................. CGAGCCAAGGCAGCTCGTGAGTGCCAAATGCTGTCCCC 280623 37 100.0 36 ..................................... TTCACACTCTCCAGCCAATGCTCCACACTGCCGGAG 280550 37 73.0 0 .C.....G..............G...CCT...G.CGG | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 94.6 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : TCGAGGACTCTGCCCCAGGCGGCGTGAAGGCGGCGGGGTGTGGCCTCGACCGGGCCGGGCGCATCGAAGCGGACGAATACGGTGGCGGGCACTCGACGGGGCTCCTTTGCGGCGTGATGAGTGGCGGACATGGCCGTCTACCCCTTACTTCTGGCGACACTACCGGAGGGGAGGCGGCCTGTATGGGGAGTTCGAGAGGTCGACGTTCTTCAGCATCGAGGGCCAGGAGGAGGCGGAGAGGGCGAGAGCCGGCGGCGCGCCGGACGGGCCACGGAAGCACAATGTGTCGACAGTCACGGCTAGGAACGTCGACCTTCTGGCTTGACGTCGTTGGAAGTTGGTGGCTGGAATGGCCTGAGGGGGTGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATGGGGGCAGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCGGAAGTGGCGCAACGACGCCCCTCCCAGAGGCAGGG # Right flank : GACTTACAGTCCACCCTCATCTCGTTTACGAGCTGAGCGGCCAGACGGCTCGGCGGAGGAAGCGCTCCCGATGTCGCACGGGCTCGACTCCTCCACCACCACACCAGGATGTGCCCGCAGTCACAGGCGGGAACGTCGATCTTTTGGCTTGACGTCGTCGGAAGCTGGTGGCTGAAGGTGCCTGAGGTGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCGCTGCCGTCCGGCCCCGCGGGGTGTCTGCGGAGCCGGTGGCGCTCCAGCCCCCGGAAGTGGCGCAACGACACCCCTCCCAGAGGCAGGGGGCAGAAGGCACCCAGCACCAGAAGGTGCATTAAGACAGAGGCCGCTCTCAGCCCCGTCAATGGCCTCGTAGGCAGAAGGCCCCCAGCACCAGAAGGCGCATTAAGACCAGCTGGCACGTTGTCGCCGCTCCGTTGTTGTGATATCAGAAAGTACCCAGCACCAGAAGGTGC # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : GTCAGAAAGCACCCAGCACCACAAGGTGCATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //