Array 1 43744-41795 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGLT01000022.1 Yersinia kristensenii strain SCPM-O-B-7953 NODE_22_length_66594_cov_10.2248, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43743 28 100.0 32 ............................ TTATCGCGCCGCAGCAGAATCTCAGCGGCAGG 43683 28 100.0 32 ............................ TCATCTAGTGGTCTTATTGCTGCCACCGGTTA 43623 28 100.0 32 ............................ AGCAATTCAGCCCGCAAGCTGGCGGCGGCGGT 43563 28 100.0 32 ............................ TCCCCCAATCTGACCGCGCCAGAAATCAGCAA 43503 28 100.0 32 ............................ CGAGGGCGTGACTGAAAAAGTGTTGGCGGCTA 43443 28 100.0 32 ............................ AACCTGAGCCACGCCAGCAACTACGAGCTGTT 43383 28 100.0 32 ............................ ATTTCCAGCACAACGGCAGCGGTTACCAACTC 43323 28 100.0 32 ............................ AACATATGCGTGATATGGGCAACACCCAGGGA 43263 28 100.0 32 ............................ CCAACTGAAGCGGCGAGACACTCGAAACGCTT 43203 28 100.0 32 ............................ ATCATGTGCATCACCATCATCATGCGGGCGAA 43143 28 100.0 33 ............................ TCTTCGGGGGCGCAATCTAGCGAGGTATAGCTA 43082 28 100.0 32 ............................ ATATCCGAAACATAAGATAAGCAACAGTATTT 43022 28 100.0 32 ............................ ATTCAGACACGGAGTTTTTGAGGGTGATTGGC 42962 28 100.0 32 ............................ AAACGCCCAGGGGTGTACGGCCACGGTCGAGC 42902 28 100.0 32 ............................ AGAATGTCTGGGGCTTCTACACTTCCGGAACG 42842 28 100.0 32 ............................ TGGTACCTAAGCTCCAGAGCATTACTTGCAAG 42782 28 100.0 32 ............................ AATACAAATAATTGTGTGCCGTCAGTTACTGC 42722 28 100.0 32 ............................ ATGGGGGAAGCGTTTTTGCAGCCGGATAAGGT 42662 28 100.0 32 ............................ TTGGATTAATGCCACATTGTTGAACGGGTGGG 42602 28 100.0 32 ............................ GTAACGAGCTGCCAACACAGTGTTATCTTTCC 42542 28 100.0 32 ............................ ATTTCAAGAATTGATCCGAAGTTGGTGTTCCT 42482 28 100.0 32 ............................ AGTCATTGTCCCGCCAGATAATGACAATTTGC 42422 28 100.0 32 ............................ TAAACCGCCATTGCTGAATGCTGAACCGATAA 42362 28 100.0 32 ............................ AGATGAATTAACAGCTAGTTCTACACCCGTGC 42302 28 100.0 32 ............................ ACTGAAGTACTCGAGTGGGTTAACAGTCAAAT 42242 28 100.0 32 ............................ TTGAAGCAATGAATCAGACGATGGCGACCACT 42182 28 100.0 32 ............................ AGCTCATGCCGATGCAGCGGGAAAGGCACTGT 42122 28 100.0 32 ............................ AGATAGAAACCCAGCGCCAAGCTGTAGCAGCT 42062 28 100.0 32 ............................ ACAGTTACTTTGACGCGTTGCAATAAGGACAT 42002 28 100.0 32 ............................ CTCCGTACTGCTGGCATTCGAATCAAGGGAGA 41942 28 100.0 32 ............................ ATTAACCCGTGCTCAATCAGTGCCGCGTCAGT 41882 28 100.0 32 ............................ GGAAAGCTAAAGCGCAACATCATCATCGCTAA 41822 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGATTTAGCCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGACATTCTTCCCGTGCCAGCAGCGGTTAAATACCGTGTCGTGCGCCGCGTGCAGGTGAAAAGTAATGCGCAGCGGCTACGCCGTCGGTCTGTCAGTAAAGGCTGGTTGACGGAAGAAGAGGCACTATTGCGGATCCCAGATAATCGTGAGCAGCACTGTCATTTACCTTTTTTACGCTTAAAAAGCCTATCCAGCGAGCAAAGCTTCTTGTTATTTATTGATCAAGGAGAGTTACAGCAAGCACCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTGCCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATTGAGTTGGCCGAGAATATTAAAAAATCCTTTTTTATGATTTTGGTGGGTTATTTGATAATAATCAGTAAGTTATTAATATTTCGTTACT # Right flank : TCTATCCGACGTCTTATTTCTCCTTTTTTGTTGAATACCTCTAAAGAGGTATATATTTGATTTTATGTAAAAATTGTTTGGTGCTGAGTTTTTTTTGAGCTGGTTCATAAAATCAAATACCCACACAAAGAATGTTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCCACTGGGCGAAATCTGTCATGGGTATCTCTGGGTGAGTGTTTGACATCCTGGTGCGGGTTTAAAAATAAAAAATGACTGCCTGGTGTCAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTTTTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAATGATAAGTTCGCGCAGCAGCATGTGGATCAATTCACCTCTTGGTTGAAAACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 54670-52241 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGLT01000022.1 Yersinia kristensenii strain SCPM-O-B-7953 NODE_22_length_66594_cov_10.2248, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54669 28 100.0 32 ............................ AAAGGGCGGGGGTAATTCAGTGCCTTGGGACC 54609 28 100.0 32 ............................ TTATGCGCGGCGCGACACAATCAACTGATTAA 54549 28 100.0 32 ............................ AGCAATGACGTGCCGGAACCCAATATTGTTCG 54489 28 100.0 32 ............................ GCCATCTTTACCAATGTGCTCAATTACCTGTT 54429 28 100.0 32 ............................ TGCTGCGTGGCGGCTCCGGCGAAATGTGGCAC 54369 28 100.0 32 ............................ TTAAGCCTGTTCAAGCGGCGTTAGATAATTTA 54309 28 100.0 32 ............................ GGCACGACCGGTAATGATTTTGATAACGCATT 54249 28 100.0 32 ............................ AATCGCTGACACAGTGAGAGGCAACCCCGTTT 54189 28 96.4 32 A........................... TGCGGCCTCCGAACCATTAAGCTGTGGCGCTT 54129 28 100.0 32 ............................ ATGCGTATAACCATCACAGCGCCGGACATCGG 54069 28 100.0 32 ............................ GGCTCAAAAACTTGAGCAACTCAACATCAAAA 54009 28 100.0 32 ............................ ACACCCCCCATATCAATCGCCACCCGCACAGT 53949 28 100.0 32 ............................ GTCTGGCAGCGGCACAATATCCACCGCATGGC 53889 28 100.0 32 ............................ GATACACCCGCGAAGAACTCGACAGCATCAGA 53829 28 100.0 32 ............................ TGGTTGGATAAGCGCCTTGTTGGTGATGAGGT 53769 28 100.0 32 ............................ GCTTGCAAGTGGAAGATATCGCCGGCACATCC 53709 28 100.0 32 ............................ ATTCGCGGCCCGGCAAGGTCACCGTCCAGCTT 53649 28 100.0 32 ............................ ACATGGATCAGGTCACCGTCCATATTCACATC 53589 28 100.0 32 ............................ GTTTGATGTGTTGTTCTACGCCAAGGCTGGGG 53529 28 100.0 32 ............................ CTGGCGGCGCATCTGAAACTGGCGCTTATGCA 53469 28 100.0 32 ............................ ATGACGCCAGTGCGAAGAGCTATACCGAACAT 53409 28 100.0 32 ............................ GACTTGTGGCTGGTCTGTCCGGAAACCAGTAT 53349 28 100.0 32 ............................ ACGTGTTCGGGACGCTTTCCTACATATCCAAC 53289 28 100.0 32 ............................ GTAAACACCCCCGGATTACCGACATCAATCAC 53229 28 100.0 32 ............................ CGATTGAGCGCAAAGCATCTTCGGCGCTCATG 53169 28 100.0 32 ............................ TGACTGGTTCCCGCTGGCGCAAAAAGCGAATA 53109 28 100.0 32 ............................ CATACTCGCCGCTTGAGGTTCAGGTAAGTTCT 53049 28 100.0 33 ............................ CGATAAGAGCAACAATTTTTTTATTTTTCTTTT 52988 28 100.0 32 ............................ TCTTTCCCGGCTAATGCCATCTTGATCACCCG 52928 28 100.0 32 ............................ TCTGTGTTCTGCAACCCATGTCACTATCAGTG 52868 28 100.0 32 ............................ ATGCAGCTAGCCACCTTTGCCACAGTCATTTA 52808 28 100.0 32 ............................ CAAATCACGACGAGCCATAACCGGGTATGATG 52748 28 100.0 32 ............................ TAGTTGAGTGAGGGAGAGTCCCGCGCAAATAA 52688 28 100.0 32 ............................ CGTCAACGAATCAAAGCTCTTGAAGATGCACT 52628 28 100.0 32 ............................ ATTATCTGAGTAGATATCTTTAGTAAGAATAC 52568 28 100.0 32 ............................ TTGCGCCGCTCATCAATCTCATAATCATCACG 52508 28 100.0 32 ............................ CTTGCCGATGGTGCGTTGCTTTAAGGTCTTGA 52448 28 100.0 32 ............................ TGATCCAGCCGCGCGGGGTTTCATCGCTGACT 52388 28 100.0 32 ............................ GGCTTAGTCAAACTGTTGATTGCCGAGCGCAG 52328 28 100.0 32 ............................ GATGGCCAGCGCGTAGAACTGGAACGGTTGAA 52268 28 78.6 0 .....................AGCATC. | ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGCTTTTTGGGCGATTAAACACAAACAAGCTTTACAAGCGGCGGAGCTCTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTCCGTTTCTCCTGCGTATTATCCCTGTTTAATCTCCTGAAATACCTTAATTTTTATCCTGTGATATTTATTCTTTCCGATATAACAAAACGAGCAAAACCCACCCCAAAATAGTGAACTATAACTTTTTCAAACTCCCCTTTTGTTTGTCACATCATCCTCAGCAGAAAAGGCTTCATGACATTTTACCTTAATCTCAACTTGAACCCTTTTTTAGAGTGTTTTTTAACTCGTTGATTTTATATGAAAATCACCAAGGTGATAAAAAAATCATTTTTTATCACTGCGCTTCAATGCACTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : AGATTGAGAGCCAAAACACATTTTGTTACTTACAGTCGGCTTATTACTGTTTTCTATTACCGGCTTTGCCGGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGACGCGCTCACTTACTGGCAAGATATAATTAACCCGTTAGAACGATTTGGGCATTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATCTGAAAACAATTCTGCACTCAAAGCGTTCAAATATTTATTATTTAGAATATTGTCGCGTATTAGTTAACGGCGGGCGGGTTGAATATGTCACTGATGAAGGGAAACAATCTCTTTATTGGAATATCCCCATCGCGAATACCACTGTTATCATGCTGGGGACGGGGACATCTGTGACTCAAGCCGCGATGCGCGAGTTTGCCCGCGCCGGTGTTTTAGTCGGTTTTTGTGGCGGTGGTGGCGCGCCACTTTTTGCGGCGAATGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //