Array 1 5130685-5130412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCCC010000001.1 Spinactinospora alkalitolerans strain CXB654 Ga0415162_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5130684 29 100.0 32 ............................. GTCCGCGCACGAGCGTCCGCGACGGACGCGGA 5130623 29 100.0 32 ............................. CTCCGGGCGCTCCACCCGGTCAACTCGCCGCA 5130562 29 100.0 32 ............................. GCGAGGATGGGCGTGGTGAGCCAGACCGAGTT 5130501 29 100.0 32 ............................. GGCGGCAGCGAGATCGCAAGGGAGGTGCTGCA 5130440 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GAGAGCTCCGCGCACGCGGAGATGGACCG # Left flank : CGCGCCGACGACATGGAGGATGGTGCCGTATTCGGCGGAGAGCAGCGGCGCTCCAGGCTGCGGGTGGTTGAAGCACCGAGTGACGGCAGGGAGAGGGTCGACGCCGCTGCCGGGGACCTGTCCGAGGCCGTACCGAGGATCCAGGTGGAGGCGTGGCGGTGGGCGCTGGACAACCGGCGCGATGACGGTTCACTGCCCAGCGGCAAGGAGATCGCCGCCCGCTTCAACCGCAAGGACCGCTGGGGACGGCTGGTCAAGCAGTGGGGACAACAGGGACGGTTCGAGGAGAAGGCTCCAGCGCTCCCGGAATCAGGGATTCAACAGGGTGGGTATCCGGTCTGGAGGAAGGCCGGTCATGTGGGCGAGGCATAGGATCGGCAGCACGGAGCCGAATGGGGTTGCCATGGTGCCTGTTCCGGAGACCCTGGCAGGGAAAGGCGATTGGCCGAAACGAGAGGTTGCGATACGATAACGCGCCACATTGCTGCAGGTCATTTGCT # Right flank : ACCCGGTTCCGGGCGGCGTGCCGGACCGTCCATGGGTGGCGTCGTGCGCGGTCTCTTCCGCGTCCTCGGTGAGTTGGTGTTCACCGCGGGGCTGGTCATGATGCTGTTCGCGGCTTATGAGTTGTACGGCAAGCAGTTCGAAACCGAACGCGAGCAGGACCGGCTCGCCCAAGGTCTCGAACAGCAGTGGGATAGGTCGAAGGGCCCCGACTCCCGGCCGCTCCCGGGTTCGGCCGACAGCCGCATGTACATCCCCGGTCTCGATCTGAACTGGGTCGTCGTCAACGGCGTCACCCAGGAGGACATTCGTTACGCCCCGGTCACTACCCGGGATCGGCCGAGGCCGGCCAGGTCGGTAACTACGCCGCCGCGGGCCACCGTGCGCCCGGCATGTTCTGGGACCTCGACCTCTTGGACGAGGGGGACGACATCGTGGTGGAGGACCAGGGGAGTTTCCACACTTATGAGGTCGTGGGCAGCGAGGTTGTCACCCCTGACCG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGAGCTCCGCGCACGCGGAGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 2 5750015-5749315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCCC010000001.1 Spinactinospora alkalitolerans strain CXB654 Ga0415162_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5750014 29 100.0 32 ............................. TGAGTCGATGCCACCGGAAGCTATCGCGGGGA 5749953 29 100.0 32 ............................. GTGCAGCAGGATCGGCGGCAGGTCGTGACGGC 5749892 29 100.0 32 ............................. GTGCAGCAGGATCGGCGGCAGGTCGTGACGGC 5749831 29 100.0 32 ............................. CCGGTCAACCATCAGATCCTCAAGGCACCCAA 5749770 29 100.0 32 ............................. TGGAGCCCGACAGGGTGGGGAGCAGAGTATGA 5749709 29 100.0 32 ............................. AATCATCAGGCCGGACACTCTTCCTCAGGGTG 5749648 29 100.0 32 ............................. CGGCGCACGGCAGATCGGCGCATGGTGTGGGC 5749587 29 100.0 32 ............................. CGACCTCCAGGCCGCCCTGGAGCGGGTCTAAC 5749526 29 96.6 32 .....................A....... GGTCCGCAGTTCGTCAACGAAGCCGTGGGTTT 5749465 29 100.0 32 ............................. GCGCAAGGCGTCGTGTTCGGCCTCGGGCGCCA 5749404 29 100.0 32 ............................. CGGCCACATGCAGATACGTTCTCCTACGTCAT 5749343 29 93.1 0 ...........A.........A....... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 CTGCTCTCCACGCACGTGGAGGTGAACCG # Left flank : GGCGCGGCCAGTCAGTGCCTGCGCCCGAACCCGCCCAGCCGCCCACCGTCCGTCAGGTCACCGCCTGGATCCTCAGCCACCCCGACCACCTCGAACACGAGCAGCAACTCCAGCTCAAAGCTGTACTCCGAGCTTGTCCCGAACTGGCTGGTCTCAGCGAGCGTGTTCAGGGCTTCGCTCGCATGATGGCCCACCGGCAGGGCCACCGACTGGACGAGTGGATGAATGCGGCCCGGGGCGAGCGGATCCCCGAACTCGACTCCTTCGTCCGCGGTCTGGGCCGCGACTGGGACGCCGTCGTGGCCGGGCTGACGCTGCCGCACAGCTCCGGCGTGGTCGAAGGCCACGTCAACCGGCTCAAGATGCTGAAGCGGCAGATGTATGGGCGCGCCAACCCGGACCTGCTGCGCAAGCGCGTGCTGCTCGCCGCCTGATCGGAGAAGAGCCAGGCTTCACCGAATCCGTGCCAGAGCCAGTATTCACGCGTCGGCGACACGCGG # Right flank : GTCATGCCAGCCGGAAGGAGATGGAAACCAGCTGTCGCTGTGCGTCAGAGCCTGACCTTGAACGTCAGGTGCCCGGTGTCCAGGTGTGCGGGGCTCGCGGGTCGCGCAGTGAGGCGATGCGCCTGCGTGCTTCGGGTAGCAGGTGGGGTTCGCGGCCGGTGCGGGCGCACAGCCACGCGGTCATCCGCAGCCTGCGCATCGCGGCCAGGACGTCGAAGCCGGACCAGTCGGTGATGTCGAAGCCGTAGGCGTCGGCGAACCCGGCGTACTCCTGCGTCGAGTACCAGCCCAGCCGTTCATAGACCGCCGCGACGACGAGATCCCATTCGCGCGGCCCGACGCTGAAGCGCTCCAGGTCCAGCAGCACCGCGGCGCCGTCGGAGCCGCGCACGGCGTTTTGCGGTGGGCGTCGCCATGCACCACGCCCGGTTCCAGGGCGAAGTCCAGGCCGCGGTAGGCCCGGCGCAGCTGCCGTAGGCGGCGGTGCAGGAAGTCGAGGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCTCCACGCACGTGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 5755102-5751779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCCC010000001.1 Spinactinospora alkalitolerans strain CXB654 Ga0415162_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5755101 29 100.0 32 ............................. GGGGCGAGGGCTTCGCTGATGTGCCTGTTGAG 5755040 29 100.0 32 ............................. CACGACCAGTTCGTGTCCGACTTCGACCACCC 5754979 29 100.0 32 ............................. GCGATGGCGCCGGTCATCAAGGCCGTGGGCAA 5754918 29 100.0 32 ............................. GAGTAGCCCACGTCCACCCAGCCGCGCGCCGG 5754857 29 100.0 32 ............................. GTCGCGCAGATGGAGGCGTACCGGAAGGCCGC 5754796 29 100.0 32 ............................. GGGACAATCACCTACATGACTCGCTACAGGGA 5754735 29 100.0 32 ............................. CGTGCGCTCCAGCCGCTCCAGCGACTTAGTCA 5754674 29 100.0 32 ............................. AGGGTGGACTTCTGCGTGTTCGGGTCCGCCTC 5754613 29 100.0 32 ............................. AACTTCCCGGTCCACCCCGAGGGGTTCACGGC 5754552 29 100.0 32 ............................. ACGGTGTCCTCCGGAAGGGCCTCGTTGATCGC 5754491 29 100.0 32 ............................. TGGCTGCTGGAGGCCGGCCTCGACACCGACGA 5754430 29 100.0 32 ............................. GGCTCCTCTCGCAACGGGCGCCGCCCGGGACC 5754369 29 96.6 32 ............................C CCGGGCGCGGCCGCCACTCAGCAGACTCTCAC 5754308 29 100.0 32 ............................. TAGACGGATTCCACGCGCTACCCGGTCTTCTA 5754247 29 100.0 32 ............................. CTCCAGACCCAGCATGCAACGCGCGGGGCCGC 5754186 29 100.0 32 ............................. GACGCCCTTCGCGCGGTCTCCCGGCTGGCCCC 5754125 29 100.0 32 ............................. CGGAGCGGGAAGCGGACGCCGCCGGACTCCCC 5754064 29 100.0 32 ............................. AAACGCAAAGGCCCGCCGATGGACACCAAGAA 5754003 29 100.0 32 ............................. GCCAGGGGGTGACGCGGTGTCCTTCGGTCCCA 5753942 29 100.0 32 ............................. TCGGAAGGCAACCGGCCCGTGAGCCTTTCCGA 5753881 29 100.0 32 ............................. CGCTCGTGCACTGGGCCGCGAAGCTCAGCGCC 5753820 29 100.0 32 ............................. AAGCTGGCGAGCCCTTCGGCCTGCTCACGCGC 5753759 29 100.0 32 ............................. AAGGCGCGCGATGCTTTCACCGCCGCCCAGTC 5753698 29 100.0 32 ............................. GCCGAGTACGAACAGGTACAGGCCATCGCCAA 5753637 29 100.0 32 ............................. CTCCAGACTCAGCACGCAACGCGCGGGACCGC 5753576 29 100.0 32 ............................. CCGGTAGAGATGCCACTGGTCCAGATCGCCGC 5753515 29 100.0 32 ............................. CGGACCGTCGATGACCCCCGACCGGTGCAGCA 5753454 29 100.0 32 ............................. TCGCGGCCGGACATCACCGCGGTGCCGCCAGC 5753393 29 100.0 32 ............................. TCGCGGCCGGACATCACCGCGGTGCCGCCAGC 5753332 29 100.0 32 ............................. AGATTCCAGAGGTTCGCCGCACGCTGCAGCGT 5753271 29 100.0 32 ............................. GCCACGACCGCTCTCGGCGTGGGCGGGACCCT 5753210 29 100.0 32 ............................. CGGTCGGTCGGTGTCAGCCGTCGGTCGGGTTG 5753149 29 96.6 32 ............................C TGTTCTTGTTATCAAACAGACACAGACCGCTC 5753088 29 100.0 32 ............................. GCCGTCGACACCGAGATGGAGAAGGCGCTGCG 5753027 29 100.0 32 ............................. TTGCGTCGACTTCATTGCCGACCGGAACGACT 5752966 29 100.0 32 ............................. GCTGGGCCGACTTCAGCACGGCCATGTCGTGG 5752905 29 100.0 32 ............................. CTCGCGAGCACTTCGCCCTCATACACGCTCGG 5752844 29 100.0 32 ............................. AGTTGTGCTCCCGTGCTGGGATCACGACGACC 5752783 29 100.0 32 ............................. GCGCTAGGCGGCACGCACATGGACCGCCTCCG 5752722 29 100.0 32 ............................. CCGCGATTGAAGAATCGGCGGAGGCCGTCCGG 5752661 29 100.0 32 ............................. CACAATGAACGAGCCGGACACGCCCGGGTGTC 5752600 29 100.0 32 ............................. AAGATCGAGCAGGGCGGGTCCGCGCGGATGGA 5752539 29 100.0 32 ............................. TCATCCAGCGCGCCGGTGAACTGCTCGATCGT 5752478 29 100.0 32 ............................. TGGATGTCGCCGGTGGGTTCCTGGACGCGTTC 5752417 29 100.0 32 ............................. TCTCCGTCAGGTTCCGGCTCCAGGACGACCCG 5752356 29 100.0 32 ............................. ACGCCGGAATCCTCGTGGACGGGGAGTACGGT 5752295 29 100.0 32 ............................. CGAGAAGACCACTGATGAGTGAGACCTACGAG 5752234 29 100.0 32 ............................. TCTTGAGAGAGGGAAGAAAATTGCCCTGCCCC 5752173 29 100.0 32 ............................. GCCAAACCCTGGACGACCGACGGCGGGGAGGT 5752112 29 100.0 32 ............................. GCCGCAGTCGCACCCAAGGCGATGTTGGACGC 5752051 29 100.0 32 ............................. CGCGAATGCGGCGGAAAGCTCCTGCTGCGCGT 5751990 29 100.0 32 ............................. GGGGAGAGGCCGGGCCTATGACGCGGCCGGGC 5751929 29 100.0 32 ............................. TGTCCGCGTGGCCCCCGCGATGGGACCTGAGC 5751868 29 100.0 32 ............................. CTGCGGGACTCGGCGCGGCGGTCGCAGAAGGA 5751807 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 55 29 99.9 32 CTGCTCTCCACGCACGTGGAGGTGAACCG # Left flank : GGCTCTACCGACTCATGCCGGCCATCATCCACGACATCCAACGACTCCTCGCCCCCGAGCTCGACGAGACCGGAGAAGAGACACAAAACCCCGAACTCGTCCATCTGTGGGACCCCGACCTTGGCCCCGTCGATGCAGGCATCAACCACGCACTCGACCCCGGGTGGTAGGCGCACATGTCCAACATGGTCGTCATCTCCACAACCGCGGTCCCCGACCACGTCAGAGGAGCCATCAGCCGATGGCTCACCGAACCCGCTCCAGGCCTCTACGTCGGCACGGTCTCAGCCAAAGTCCGCGACAAACTCTGGGAAGCCGTAAGCGCCTCCGTCGGCGAAGGAGCAGCGGTATGCATCCACCCCGCCGAAAACGAGCAGCGCTATGTCATCAAAACCGCAGGGGAGCGCCGTCGGCGTGTGGTCGACTTCGATGGCCTCCAGCTCATCGAATTCAGAGCCGAAAACGGTAACGTGCCTTTGTGAAACCGCAGGTCAACAAGT # Right flank : TTGGGCTTTCACCCTGCGGGACAGGTTCGCGGTGTCAACGTCGCTTGAAAATGGGCTCTGGCACGGATTCGGTGAATCGCCTGCGGATGTCGGTCCGATCCCGCGATGATGCGGGGTGTCGCTCTCCTCCCTCTTCACGCTGCTCTTCCCGCACCTGGTCGATCTGCGGATTGATGACGTGTACCGGGCCGGGCTATCGGTGCGGATCGTGGCGTCCACCCGAGCCGAAGACGCCGCCTGCCCGGTCTGCGCGACCCGGTCACAACGCGTGCATAGCCGCTATGTCCGCCGCCTCGCCGACACTCCCGTCTCCGGCCAGGAGGTGCTGATCCACCTGGGCGTCCGCCGGTTCTTCTGCGATGTGCCCGCCTGCGGGCGTCGGATCTTCGCTGGGCAGGTGCCCGGTCTGACCGTGCCGCACGCCCGTCGCAGCCGGGGGCTGAGCGACGTGCTCGCCGGCATCGGCATGGCGCTGGGCGGGCGCGCCGGAGCACGCCTGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCTCCACGCACGTGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 4 5766400-5764466 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCCC010000001.1 Spinactinospora alkalitolerans strain CXB654 Ga0415162_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 5766399 29 100.0 32 ............................. GAGGTGTAGCCGATCACGGGCCGCTGAGTACC 5766338 29 100.0 32 ............................. CTGTCGTGGGCGCCCAGGATGGTGGCCTGGCG 5766277 29 100.0 32 ............................. ATCGCGCTCGACTTCGAGTGCGAGCGCCTGGT 5766216 29 100.0 32 ............................. ACCGCTGCCAATGTGTACATCGGGTGTCCTTC 5766155 29 100.0 32 ............................. CTGCTGGAATCCGGCCGCGTGCGGAGGGAACG 5766094 29 100.0 43 ............................. CATGGACGACCGTGGAGGGCTGATCCGTGAGAGCAACGGTGCC 5766022 29 100.0 32 ............................. CAGTGTTCCCCTTGATGTGTCCCGCTGGGGCG 5765961 29 96.6 32 ............................A CACAGGGAACATAGGGAACACAGGGAACATGG 5765900 29 100.0 32 ............................. GTTCTCAAGCTTGGTGCCGAACAGCAGGTGTA 5765839 29 100.0 32 ............................. GACCACCGGACCTGATGGTCTCAGTGGAATTG 5765778 29 100.0 32 ............................. AAGATGTTCTGCGGCACCGCCAGCAGCTCCTG 5765717 29 100.0 32 ............................. GACTCCAACAGTTCGTCAGCGTCCTTCAAAAG 5765656 29 100.0 32 ............................. GTGGCTTCGACGGCGAGCGGGCCCGTGAGGGG 5765595 29 100.0 32 ............................. AAGATGTTCTGCGGCACCGCCAGCAGCTCCTG 5765534 29 100.0 32 ............................. GCCGCGACCCTAGAGAGACGACCGCGGAGGAG 5765473 29 100.0 32 ............................. CCGATGAAGTTGCCGCTGCCGCAGCCGGGTTC 5765412 29 100.0 32 ............................. TCGAAGGCACCCCCGACATCGCGGCGTTTCTG 5765351 29 100.0 32 ............................. CAAAGGTGGGTGTGGTTCAGGGGTTGGGGTGC 5765290 29 100.0 32 ............................. GCCGCGACCCTAGAGAGACGACCGCGGAGGAG 5765229 29 100.0 32 ............................. CCGAACCGTGGAAGGACCGCGGCGGCAAGCCC 5765168 29 100.0 33 ............................. GCCACCACTCCGGCTCCGGCGGGGAGGGCGACC 5765106 29 100.0 32 ............................. AGATAGAGAAGAATCCTTCGGCGGGAAGGGGT 5765045 29 100.0 32 ............................. GTGGAGTTCAGAATGGTTTGTACCGCCCTATG 5764984 29 100.0 32 ............................. CGTCGGCGGCTAGGCATTGCGTTCCTCCGGGT 5764923 29 100.0 32 ............................. GTCGGTAATTTCGGAGGCAGCGACTTCTCGAA 5764862 29 100.0 32 ............................. GGGAGCCACCGGAGGTACACCAAGTCCCGCGC 5764801 29 96.6 33 ............................A GTGCGTCTCGGCCCACGTCAGGCGGCGCGGCGC 5764739 29 100.0 32 ............................. CTGGACGTGGTCGCGTTCTACGCCGAACCCGG 5764678 29 100.0 32 ............................. CGATGCGGCGCACGCCACCGCGCTCGGCCTAC 5764617 29 100.0 32 ............................. AAAGGGCTTGGGCAGCATACCGATGATGCTGG 5764556 29 96.6 33 ...C......................... GGAGTTCTCGGGTTCATCGCCAGCGGGGGGTCG 5764494 29 79.3 0 ...C........T....T...T...G..T | ========== ====== ====== ====== ============================= =========================================== ================== 32 29 99.0 32 CTGTTCTCCACGCACGTGGAGGTGAACCG # Left flank : CGCCTCTCTCCAGCGTGGGCCTCGTTCTTTCGTGAGGTGTTCGGCACGTCGTTCAGCCGCCGCTTGCCCCCTCTGGTCCCAAGGAAAATGGGCCGGTAATGGAGCCCTCTCCGAGGCTACGGTGGGGATTGATCGTGGCGGGCCCACCGCTAGCGATGATCAACGCGGTGGTGCCTACTTCCGCATACTCGGACTGGTGCACACTACGGTGGCCGCAATGGCAGTCTTGTTCTCGCTGTCAGCGGATGGCAGTGTCAAGGCCTTGTGTTCAGGGCATTTCTATGCATCCGTCTACCAGGCTGGCCATCTACGTTTCAGGGAATCTGAGGAGCGTGAAAGGTATGAGGGATGTGCTGGTGTGTACCTCTCGCAGGGGTACCGGGCAGCGCTGCGCGCCCGGCGATGGCTGGGGTGGGACTGTTACTACTGACCGTTCCCGGTTCGTTGAACTTAGACATGAAAACGGTAATGTGCTTTTGTGAAATCGCAGGTCAACAAGT # Right flank : TACTACTTACCTCTTTAGAAAAGGTTGCTTATGGGCAGGGCTCGGTCGTTCTTCTAAGAACAGTCTGGATGCGCACTGCAGTTGCTCTCAGCCTTGCGTTGTATGCAGGCTCCGGTGTCATTGCCTGTGTCTAGTATCAGCGGTGCTCGCCGCATACGGGTGTCTGGAGGGGCGCTGATGGAATTTGAAGATGCAGGAGAGGTGAGCGTCGACCTGCAGATATGGGGAAAATCGAGAGGCCTCGACGAAGAGCGCTATCCTCTAGTCTGCCATCTGCTTGACGCGGCGGCCGCTATGCGGATTCTGTGGCGTGATGTGGTTTCTGCCGGGATGCGCCGGTGGCTGGCTCGGCAGATGGAAGTCACGGTGGACCATGCTGGCAGACTGCTGGAATTTTGGGCAGGTCTGCACGATATCGGTAAGATCACCCCGTCGTTTCAGCGGCAGGTGTCTGTTCCGCATGGGTACCCGCTGAGCCCCGATGACCGGAAGGTCGGGCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCTCCACGCACGTGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 6424993-6426488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCCC010000001.1 Spinactinospora alkalitolerans strain CXB654 Ga0415162_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6424993 29 96.6 32 ............................G CACACTCTCTACCAGCACCTGATCGGCCGCCG 6425054 29 100.0 32 ............................. ATCCAGCCCTACATCCGCGACGAGGAGCGATA 6425115 29 100.0 32 ............................. GGGACGTAGGCCGGCAGGGTTTCGAGGGTCAT 6425176 29 100.0 32 ............................. ACGTCCGATCCGGGATCCTGCCCGAGAGGCCA 6425237 29 100.0 32 ............................. TTGAGGACCCTCCCAGTCGGGGAGCCGCCCTT 6425298 29 100.0 32 ............................. GGCGGAGACCCCGGTAAAGGCGTCCACATCAT 6425359 29 100.0 32 ............................. TCCGCCCGCTCCGCCTGCTCGGCGTGCCTGGC 6425420 29 100.0 32 ............................. GAAGGCCACGGAGACGACTCGGCTCGAGTCGT 6425481 29 100.0 32 ............................. CAGCCTCACCCGGCGCCTCCGCATCGGCCGCG 6425542 29 96.6 33 ............................G GACCACCGTGGTCCACCGCCGCCCCAGAGAGGT 6425604 29 100.0 32 ............................. GGCCACTGGTTCATGCGCGGCTGGTGCGCAGA 6425665 29 100.0 32 ............................. GTCATTCTAGGCGCACAGGAGTACGGACGCCG 6425726 29 100.0 32 ............................. ACAACCGAATTAGGTCACGAAAAGGTAAAGAT 6425787 29 100.0 32 ............................. GGCGTGACGAACGCGTGGTCGCGGGCCCAGAC 6425848 29 100.0 32 ............................. TCATCCGACGTGGACCGGCTGGTCGACCTCGG 6425909 29 100.0 32 ............................. GACCTTGGCGAACCCGTCCTTCACCCGGGTCG 6425970 29 100.0 32 ............................. GCCTACTCCCAGGCGCTCTATGACGGCGTGGA 6426031 29 100.0 32 ............................. AGATGGCGCCCTATCGGGTGTCCGTCTCGTAG 6426092 29 100.0 32 ............................. GCGATTCCATGTCGCGCCACTGCACCTGCGCG 6426153 29 100.0 32 ............................. GGCGGCCTGCTTTTCGACCTCGGCGCCCACCA 6426214 29 100.0 32 ............................. TGCGCGGCGGTGAAGATGGCGTTGGCGACCGC 6426275 29 100.0 32 ............................. GGCACGGTGGACCTCCGCACCGGCGATCTCCG 6426336 29 100.0 32 ............................. CACGGCACCAGCATGCGCGACGCGATCGCCCG 6426397 29 100.0 32 ............................. AACAGGCAGCAGGGAATGTCGTCCAACAACGA 6426458 29 96.6 0 .........................G... | G,G [6426481,6426486] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 CTGCTCCCCGCACACGCGGGGATGGTCCC # Left flank : CAGCGGCGCTGCAGCCCGGCGGCGTCACCTATGCCGGCCACCACTTCTGCGTCCGCCCACACCGGGACTGCCCTCACCCAAAGGCCGGCCTGTTCCACGCCCGCCTGTGCGGGGTCGACGTCATCGGCGTCTTCGACACGTGACGGCTCGGTACATCCGGTTGCCAGGAGTGATGTCTTCTGAGCAACGGAAGAGGGGTGTTGCCGCTGACGAGTAGGTGACCGGCGACAGTCACACGCCGCGATACCGGTCCGATTCGAGCGGGTCCAGACTGCGTCGCTGTGCGACCGTTCGACCGTGGCATTCCTGCTACGTATTCAGTCGGTGGCTCGCCATCGACCGTAGTTGTCGGCGATGATCGTCGTGTACCTGCGGCCGCGCCACCCACCTGAGAGTAGATCCGCTGCATGAAAGGTTCTAACCTGATGGGTGTTTTGCCCGATTCTTGAGAAGTGAATAAAACCAGCGTCCAAGGCGAGAAAACATGCAGGTCATTCAGC # Right flank : CCGATCTGCTGACGTGTTCCACGTCCAGGTGGGTGCATGGCAGTGAGCGCTGCTCCACCGACGTGGGAAGATTCGCTCGCTGCCCCGGCAAGCAGATTGCGGGTCACTTTGGCCGCAAGGAGTGTCGGGGCGACTGACTAAGTAGTGGGGGAAGGCAAGGCCGCTTCAAGGACCGTGTCACCTGAATGGCCGACTATGGGTTTGCAAGGAAGCCCGACCAGCGGACGGCTCGCCCTGAACCGCGGCCGCTCAGGCTCCCCAGACGGGATCCAGTGCGGCGCCGAAGCTCTGGTGGAGTCTGCTCTCGGCCGTCTCCGTGATGACGTCCTTCACCAGTGGCGACAGGCAGAGCCGGGCGACCCGCGGGTGCCGGCCGGGATCTGGGCAGATGAGGACCGCAAGGATACGCATGATGCGAACGAGGCTCTCCAGGTCCCAAGTGACCGCGAGCGGCTTCACGTAAGTCCATATGGCGGCCAATGTGAATCCCGCGACGTAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 6471907-6473643 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCCC010000001.1 Spinactinospora alkalitolerans strain CXB654 Ga0415162_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 6471907 30 96.7 31 .............................A GCGGGTACGCCTCCGGCCGGCCCTTCAGGTC 6471968 30 100.0 31 .............................. CCACTGATTTCGCATGCCCGAAAACAGTCGG 6472029 30 100.0 31 .............................. CGCAGTTCTCCGCGCCGACCGCGATCCGGGC 6472090 30 96.7 31 .............................T GTCGAAGTTCGCCAGCAAGGACGGCACCGCG 6472151 30 100.0 31 .............................. GCCACGTGGCGGGGAACGTGGTGTTGAACGA 6472212 30 100.0 31 .............................. GCTCCTCGAGCCTCGTGTGGCCGAGGTCGAC 6472273 30 100.0 31 .............................. CGGCCTCGCCGTGGGGCCGGTGGGAGGACTA 6472334 30 96.7 31 .............................A CATGGCATTCGGTGTGGATCTCGATGCGGTA 6472395 30 100.0 31 .............................. GGCACCGGCGTCCAGGTCCGTCTTGACCTGA 6472456 30 96.7 31 .............................A AGAAGCAGCTCGCCGAGTACTACGGCGCGAA 6472517 30 100.0 31 .............................. CGAATTGTTCGCCAAATCCTGCTTAAGGAAG 6472578 30 96.7 31 .............................A GGCGCGCGGGCAGGTCGGCCAGCGCCGACCG 6472639 30 100.0 31 .............................. GACGCCGATTGACGTCCGCGGGAAGGATGTC 6472700 30 96.7 31 .............................T CCTGCCATGCCGGCCATTCCGGACAGTCAGG 6472761 30 96.7 31 .............................A TCGTCGTGTTCATCATCGTTTTCGCCCTGAT 6472822 30 100.0 31 .............................. CCGCACGCATCGTGGACAGCTCCCGCCGCGA 6472883 30 100.0 31 .............................. ACGTGCCGTTCGGCGTCGAACATCTCGTAGA 6472944 30 100.0 31 .............................. AGGTCCGGCAGCTCCCGCAACGCACACACGG 6473005 30 96.7 31 .............................C GTCCCCACGCACAGCGGAGCTTGTCCCTGGA 6473066 30 96.7 31 .............................A TCCCGGCCACGGCCTCCGCGACGGCCGGGTC 6473127 30 100.0 31 .............................. GTTTCCCGCTCAAGGAGGCCAAGCGCGGTGC 6473188 30 96.7 31 .............................C GCGCGAACGCCCGGGGCCGCCAACGGTGCCA 6473249 30 96.7 31 .............................A GCGTGTATCCCACGGTCACGCCGTTACGCCA 6473310 30 96.7 31 .............................T ACCCGGGCGTTCCCAACCACGGTGACCTGAA 6473371 30 100.0 31 .............................. GCTGTCAAGACCCGCCACGCATCCGTGACGG 6473432 30 96.7 31 .............................C GGTCTTCAGACATGATGGCCGTACGCTTATC 6473493 30 96.7 31 .............................A GGACCCGATTTTTTACTCGGATCCGTCCGCA 6473554 30 93.3 31 ..............T..............T TCTCCTCCGCGTTGCCGTGGTAGTAGTCCTG 6473615 29 93.3 0 ................T......-...... | ========== ====== ====== ====== ============================== =============================== ================== 29 30 97.9 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CCGACCGAGGTCCCGACGTCGAGTCCGGCCGCAACCATGCGGACGGATTGATCTGGTGACCGTCATCGTGCTCACCAACTGCCCAGCGGGACTACGCGGCTTCCTCACCCGCTGGCTGCTGGAGATCTCGCCGGGCGTCTTCATCGGCGGCCCTTCTGCACGGATCCGGGAAGCGTTGTGGGCGGAAGTGCAGGAGTACGCCGGCAACGGCAGGGCTCTGCTTGCCTACAGCACCGACAACGAGCAGGGCTTCACCTTCAAGACCTTCGACCACAAGTGGCACCCGGTAGACCACGAAGGCCTGACCCTCATCCGACGCCCGAACGAGCAGCAGACCAGTCCCTCAGCGGCGAAGTCCAAAGGCTGGAGCAAGGCGTCCAAGTACCGCCGCTTCGGAGGCCGGTAAGGCGCCGCCTCTGGTGTCGATGGGTATTTTGTCGGATTCTCTTGAAGTGAATGAAACAAGCGCTTAGCGTCAGTGAACACGCAGGTCATTAAGC # Right flank : GGATGGAGCCGTGCAACGTGAGTACCGTCGGCCCGGTTTCGTGTTCCGTGGAGGGCGGGGAGGAGCCGGGCGCAGGGGTGGGGACGCCTAATGGGGGTGAACAGGGGTAGCGGGGGGCGGCGCGGGTAAGGGGAACCGTCAGGGGAGCGTGGGCATGCAGAGCCGGAGTGAGCGGATGTTGGGCGGGCTGCTGCAGGGCAGTCACCTGGCATCGCTGGAGGACCTGCCGACCCTGGTCGCCGAGCACGCGGCTCTCGTGGGCTTCTCCGAGACGATGATCTATGTGGTGGACCTGCAGCAGCAGTCCCTGCTGCCGCTACCGGGCCAGTACGACGCGTCCGGGCGAACGCTTGAGCCGATCCGCATCGACACCACCATGGCCGGATGGGCGTTCCGCAACGTGGACGTCGCCCGGGCCTGGCACACCGCAGCCTCTTCGGCGACCGTGTTCTCGGCGCCGTCCGCGGAGCGGGAACCGCGGCGACTGTGGATACCGCTGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 6681032-6682768 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCCC010000001.1 Spinactinospora alkalitolerans strain CXB654 Ga0415162_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6681032 29 100.0 32 ............................. GGCTGGTTGCCACCGTTGGCGTGGGACGACGA 6681093 29 100.0 32 ............................. GCCGCATGAGCTATGCGAGTGCGTGCGTGATG 6681154 29 100.0 32 ............................. ATCAAGCGTGTTGTTTCGAAGAACTACGCGCA 6681215 29 100.0 32 ............................. ACGGACCCGGACATCGGTGCCCGTGTAGGTCA 6681276 29 100.0 32 ............................. AGGTGCTGCTCCCGCTGGCGGACCTGGACAAC 6681337 29 96.6 32 ............................T TTTTCCCGAGCTTGCAGACGCTCCGAAATGCT 6681398 29 100.0 32 ............................. TGCCGCTCATCGTGCCGCAGAGCGCAGGACAG 6681459 29 100.0 32 ............................. GCGGGCAAGGCGGTCAACAACATCTGGTCGGC 6681520 29 96.6 32 ............................T GCTCCGCTTCCGCGGTCAGTTCGTCCACGAGC 6681581 29 96.6 32 ............................T TGCGTTCCCTCCGGGAGGTCCGGGGCCGGTTC 6681642 29 96.6 32 ............................C TTGACCTGAAGCTCGCGGCAGAGGCTGAAGGC 6681703 29 100.0 32 ............................. GATCGGGTGAGTAGCATGCATTACGGCACCGT 6681764 29 100.0 32 ............................. TACTCCCCGGCTGTGCCGGGGCTCGAATGGAG 6681825 29 100.0 32 ............................. GCTCCGCGGGAGTGACGCGGGGTCCGGGGCGC 6681886 29 100.0 32 ............................. CGGCGGGGAGGAGACGGCCCAACGCGCGGTCC 6681947 29 100.0 32 ............................. CGGCACGTGTGCCGGATACCCCGGCACGACAG 6682008 29 100.0 32 ............................. CGGTCATCCGCCGTGCGGAATCGCGCGAGCAT 6682069 29 100.0 32 ............................. CCGGGGTCACCTACGCGTGCGTTGGCGAGCTG 6682130 29 100.0 32 ............................. CTCTTGGCTGAGATCCGCACCGTCCTCACCGA 6682191 29 100.0 32 ............................. CTGCGCGTGTTTGGCGAGTGGTTCGAGATCGG 6682252 29 100.0 32 ............................. ACGGCAAGGCGCGGGACCGCGAGCGGGAGGAG 6682313 29 100.0 32 ............................. GTCGCCTCAGTGACGTCCGCCGACAACTCCGT 6682374 29 100.0 32 ............................. ACGACCGGGCCGACTTCGTGCAGCCGGATCTC 6682435 29 96.6 32 ............................T CCCCCGTGCCGGCTGCCGCTGGTGTGCATCTC 6682496 29 100.0 32 ............................. CGGATCAGCCAGGAGCTGGCGCGGGCTGCCAC 6682557 29 100.0 32 ............................. TACTCCATGACAGGGGCGTAGTCGGACGCGGC 6682618 29 100.0 32 ............................. TTAGAAAGTAGGATCAACCGGACCTGGTTGAG 6682679 29 100.0 32 ............................. GCGCACGAGATCTTCGTGCACCCCGACACTCC 6682740 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.4 32 CCAACCCCCACGCACGTGGGGATGAACCG # Left flank : CCGGACGTCGACGACATCGAGGTGCCGTCGGGGCCGAGCTCGTGGCGGGTCGTCGACCTGTGGGATCCGCTGGCGGGCGCGGTCGCCGGAGGCGTCAACTACGCGGACCATTTGGTCGGGGAGCCACGCTGATGGCGAGCGTGGTGGTCATCGCCACGACGGCCGTGCCGGACCATGTTCGGGGCGCACTGTCCCGGTGGATGGTCGAGCCGGTCGCCGGCGTCTACGTGGGCACGATGAGCGCTCGCGTCCGTGACGAACTGTGGTCCGTGGTGAGCGACTCGGTCGGCGACGGAGCCGCCGTGTCCGTGCACCCTGATGACAACGAACAGGGCTTCAGCATGCGCACTGCGGGGGAACGCCGACGCGTGGTCATGGACTTCGACGGCTTGCGACTGATCCAGATGTCGGCATTGGAGGAATCAGCTCCGAACACGGCACCGACCCCCGAGGGTTGGTAACGCAGAGATAACGCGCCACAAAACCGCAGGCCATTAACT # Right flank : GCAGATCAACGGGTACGGCGAGCTCGTCGACGACCACCGAGTTCAACGCGTCGCTGGACGAGGTGACCTTCGACGGAGAGCGGCTGCGCGTCTACGTCACCGCGCTCGTCGACGGGTGCGAGTGGCGCTCGGGGAAGGTCACCGGCCGGAGTGCGCCGCGCACCTGAGCACCGCATTGCTCAGCAGAAAAGGAGACCCCTGCTCACCTGGTGTTCCAGGTGAGCAGGGGCCTCCTTCGTATGCAAGCATGTCCGGATCGGCCTCGCCGTACCCGGTCAGTCGCTCAGGAGCTTCACGCAGTCGGTGTATCCCCAGCCGGGTCGACTCATGCAGTCCTTGAGGTCCTGCCGGTATTGGGCGTCTTGCTGCTCGGTCCATGCCTCCTCAGGGGTCGGCGGATCCTGCTGGGGCGCTCCAGCATCCAGGCCAGCGCGATGAATACGATCGCGATCGCGCCGAGGCAGCCCATGCCGACCCGGTTCTCCGTCTTCGCCCAAAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAACCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //