Array 1 3848-4215 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGLV010000015.1 Paenibacillus silagei strain DSM 101953 Ga0454155_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 3848 33 100.0 35 ................................. TACACCGACCCAGAGGTAAGGCAGCTGCAGGATAA 3916 33 93.9 35 ............A.A.................. GCCTCTATGCCTGTCGCATTGACCAGGATACCCTT 3984 33 93.9 35 ............A.A.................. TATAGTATCAAGATAAGGAAAGAACACGATTGACC 4052 30 78.8 34 ..............AA---.....T.C...... GCGGCCAGATAATTTACAATCGGCAGGACCGCAT 4116 32 97.0 35 ...............-................. AGCATGGAGCAAGAGATTAAGTAGTACCTCGGTTT 4183 33 97.0 0 .............................G... | ========== ====== ====== ====== ================================= =================================== ================== 6 33 93.4 35 GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAT # Left flank : ATCCTTCCGTAGAGGTGGTCTTGAATACTGCAAATTCTCGGGAAGCGGTGGAGGGGCTGCTACAGTACGATGCCGAGGTAGCCGTATACGGAGGCGGCTGGGAGGAGCAACCAGGCATTGAATGGGAGGAACTCCTGGAGGACGAGCTCTGGTTCATCGTCCCGAGAAACCATCCATACGGCGGACAGGAAATTACTTTAGCGGAGATGATGAAGGTTCCCTTCATTCTGCGTGAAGAGGGAAGTTCTACCCGGGAGCGTCTCTTCTCTTTATGCCGGGCTTTGAACGTGAGTCCTCCCAAGGTCGGTCTACAATTTAATGGGGTGAACGAGATGGTTCGGGCCGTCATCGCGGGCTACGGAGCCATCTTCATCTCCTCTCTGGCGGTTAGGGATAATGTGGAACGCGGGGAAGTGGAGCGTGTGATGGTTAACGGCACTTCGCTGCTGAATCCGATTGCCGTCTGTACGGAAAAAGCATGGGTTATGCTGTTTTCCGCT # Right flank : TAACAATGGAATGAGATGTTTCGGATCGTCATGGCTGGCTACATTGCTATTTTTCTCTTAAAGTAGTCGCTGCTTCTCTACTACCTGGATGAGCTGATCCATTGTATGGAAAGCGATATTGCGGGGTATGAATGACAGAAAAAATCTTACTCTTACCAGCGCCATGCTGACAGCTGAAGCTAAATTAAACTGCTTTAACGAGACAAATCATACATATGGAGGTAATGAAGCTTGAGTACTCACTACTATTTCAGTTGGTTTAATGATTTTTTCCCAGATAAGCTGGTTCAATGGTTGCAGGAGGATCTGCAAGACAGACATTCGCTTGTTATGATTAGCGCTCAACCGTCTAATTATGAAGACGGGCAGATTAACTTTGAGGATATAATGGAATGGACATGGCTCCATCAGGCTAATCTTATGTTTGATGAGTATCATTTCATCGATTACCGCATGCCGAAGGAAGAGGCCCGGCAATGGATTCAGAACGCTTCGGTCAT # Questionable array : NO Score: 8.34 # Score Detail : 1:0, 2:3, 3:3, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCCGTATAGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 11254-11551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGLV010000015.1 Paenibacillus silagei strain DSM 101953 Ga0454155_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 11254 32 100.0 35 ................................ ATGCAATGGGCCACATTCACCAGAAAATCATCATG 11321 32 100.0 36 ................................ TATACGGCGATAGAGCGAGGGACTGAAGGAGAAAGG 11389 32 100.0 34 ................................ AAGGATTACCTGATAACATTCACTACTATCACCT 11455 32 87.5 33 ....T.......TT..T............... GATTGAATTCGTGGTCTATGGAAAATGCGCATT 11520 32 87.5 0 ..........GT.T..T............... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 95.0 35 GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Left flank : CTTTGGCTACTGGATTTGGGGTCTGGGTTGAAGCTGCTTTTGCCTCAGCAGTTTGAATATGAGAAGGATCAGTACACCCCACTATGTAGCTTAAAAGGGCAACAATACCTACGGACCTTACTATTAGTTTTTTCATCGAGTCTACTTCCTTCCCATGTTCTACGAGGATTCTTCCCTCATGATGCTTACATTCCTACCCAGTATATCGAATAGTCTCTTAATTTAAAACGCAGTGGATAAGACAAAAAAACTACAAAATTGAAAGAAGTTATAGTTATACAGAACCTATCAAATGGGTTAAAATAGAAGGAGAGGGCTCGGTGCGAATGCCAAGCTCCCATGAAATCTCCGGGGGTTTCGCACCTCAGAATTTGTCGAAAGTTTATAAATAAGAGGATAGTCTTTAAAAGCCAAGGGTGGTTGTATATCTTTTCAAGATTAGAATAAGCGGACAGATGGTGAATTAATGCGGGAAAAGCATGGGTTACACTTTTTTCGCT # Right flank : TATCTTTGGGATCTCCTCTATAGGAGGGATCTCCTCTTATACAACATCACAAACACACTTCATTTATCATTTTTATGTGCGAATACCAACCTGGGACTTTAAAAAAATACGAAAGGAGACTCAATTTCCTAATTGGATTTTTTGTAAATCAATGTCCACTAGCAAAGAGGGGTGCCGAAGCAGATTTTAACTTCTCCAGATAGCCATGATATTGCAAAAGTGACTGAAGATTATTCTGCGAATGAACTAACAGTTACTCAAGGGGAAATATTGTGGGGGTTAAAGCACTTAAACGAACGCAGCCGCAGGACTCAGTGCTTTTTTAATCCTATTCTATTTCTTCAGGCGTATCTCAAATAAATCGTTAGGACTAACTTCAAAATAGAGACACAACTTCATGATCAACTCTGCGGATATTTTCTTTTTATCCATGTTGGTGTTGTGCACCAATTCCATAATGGTAGTTCTTCGATGCCCTATCTCATTAGACAGTTTAAGTA # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 135413-135904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGLV010000018.1 Paenibacillus silagei strain DSM 101953 Ga0454155_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =============================== ================== 135413 26 100.0 24 .......................... TGGTAGCGCGGGGGATGTGGCTCC 135463 26 96.2 26 .........................A GCCGATAGCGCGAGGTAAATAGCCTA 135515 26 100.0 25 .......................... TGGTAGGCGCGGGGGATGTGGCTAA 135566 26 100.0 25 .......................... ACGCTGGCGCGAGGTAGTCGGGCCC 135617 26 100.0 25 .......................... ACGCTGGCGCGAGGCAGTCGGGCCC 135668 26 100.0 25 .......................... ACGCTGGCGCGAGGCAGTCGGGCCC 135719 26 100.0 31 .......................... CGCAATGTGCAGGCGCGAGACAATCGGCTCC 135776 26 88.5 26 ......GA.G................ GCGCCGGGTGCGAGGTAAGTAGTCCG 135828 26 76.9 25 .........G......A.CAT...T. TGCTGGCGCGCAGGCGTGTGGTCCG 135879 26 80.8 0 .........G.........A.G..TG | ========== ====== ====== ====== ========================== =============================== ================== 10 26 94.2 26 AATGTATGCTAAAAACCGACCACAAT # Left flank : TTGTCTTCATCGGGTTCAACCCCAGCATCCGATCCGGGGAGCTGGGTCATCATTATGCCAATCCGCGTAATAATTTCTGGCGCATACTGCATAAGTCCGGGCTGACGCCGCGGTTATACGAGGCCTCCGAGGACGGGGAGCTGCTGAAGCTGGGGTACGGCTTCACCAACATCGTTGCCCGGCCCACCGTAGGTGCTGAAGATATCACCCGGGAGGAGTACACCAAAGGCCGCGAGCTCCTGCGGGTCAAGCTGGAGGAATACCGCCCGGAGATTGCCTGCTTTGTCGGCAAGGGCGTGTACACAGAGTTCAGCCGCAGAACTACAGCCGCCTGGGGCTTCCAGGAAGGCATCGCTCCCGTGGTGGACGGAGTCCGCGAGTTTGTCGCCCCATCCTCCAGCGGCCTGGTCCGCATGCCGATGCCGGAGATCATCGGCATCTACTCGCAGCTGCGTAAATTTACTGGGGAGCAGGAGTTTTGAGGCCAGGGCCGTGTGATC # Right flank : GAGCTGGTGCGAGGGCGAAAGGGTGTGTGTAGTGCCTGGTTTGTGGTTTTAAATCGCATCCCGCTTAAACAGCGGAGAGAACGGAACGATTGTGTAAAAGCGATAGCGGTCGCCTTGGTCTCCGGATTTTCACCGCTAAGGGGAATGAAAAAAATCTGGAGAGCACAGCGATTGGAACAACGGTCCGTTCGCGGAGCGTCCATCCGAGTGCCTGCGTTGATCCTGCTCGAAAGTAAAAGCCCAAGTAACCATCTCTGTGGAACAACGGTCCGTTCGCGGAGTGTCCACCCAAAGCGCCTACGATGATCCTACTCCAAGTAAAAGGTTCTCCCAAGTAACCAATTCCGTTCACTCAGTGTCCACCCAAAACTAAAAAGGCTGTCCCAATCAGCCATTTCATGACTTTTGGGAACAGCCCTTTTCAAAAGATAAGTATTTATAGGCTTCGCGCTAAAATTATCCTTATCTTTCTCGCTGAAACGGTACCGTCCTTTAAAAGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATGTATGCTAAAAACCGACCACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //