Array 1 163376-160662 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMQ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462404, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163375 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163314 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163253 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 163192 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 163131 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 163070 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 163009 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 162948 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 162887 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 162826 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 162765 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 162704 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162643 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162582 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162521 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162460 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162399 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162338 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162277 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162216 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162155 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162094 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162033 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161972 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161911 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161850 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161789 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161728 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161667 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161606 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161545 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161484 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161423 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161362 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161301 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161240 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161179 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161118 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161057 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 160996 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160935 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160874 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160813 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160752 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160691 29 93.1 0 A...........T................ | A [160664] ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182048-179883 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMQ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462404, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182047 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181986 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181925 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181864 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181803 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181742 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181681 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181620 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181559 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181498 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181437 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181376 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181315 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181254 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181193 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181132 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181071 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181010 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180949 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180888 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180827 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180766 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180705 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180643 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180582 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180521 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180460 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180399 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180337 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180276 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180215 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180154 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180093 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180032 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179971 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179910 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //