Array 1 113069-112142 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXA01000004.1 Salmonella enterica isolate STY31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 113068 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 113007 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 112946 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 112885 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 112823 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 112720 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 112659 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 112598 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 112537 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 112476 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 112415 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 112354 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 112293 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 112232 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 112171 29 96.6 0 A............................ | A [112144] ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.5 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 130693-129200 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXA01000004.1 Salmonella enterica isolate STY31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 130692 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 130631 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 130570 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 130509 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 130448 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 130387 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 130326 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 130265 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 130204 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 130143 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 130082 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 130021 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 129960 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 129899 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 129838 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 129777 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 129715 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 129654 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 129593 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 129532 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 129471 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 129410 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 129349 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 129288 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 129227 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //