Array 1 162590-161846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATLU010000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 2606 NODE_5_length_255128_cov_77.3362, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162589 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162528 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162467 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162406 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162345 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162283 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162180 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162119 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162058 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161997 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161936 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161875 29 96.6 0 A............................ | A [161848] ========== ====== ====== ====== ============================= ========================================================================== ================== 12 29 99.4 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181168-178722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATLU010000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 2606 NODE_5_length_255128_cov_77.3362, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181167 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 181106 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 181045 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 180984 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 180923 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 180862 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 180801 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 180740 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 180679 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 180618 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 180557 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 180496 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 180435 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180374 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180313 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180252 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180191 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180130 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180069 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180008 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179947 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179886 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179825 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179764 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179703 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179641 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179580 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179519 29 100.0 18 ............................. TTGACCCGAAGGCGAAAT Deletion [179473] 179472 29 96.6 22 A............................ GGATATGTGAAGTTATTACGCA Deletion [179422] 179421 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179360 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179299 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179237 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179176 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179115 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179054 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178993 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178932 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178871 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178810 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178749 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 41 29 98.4 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //