Array 1 211552-212350 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUTG010000004.1 Rhodococcus sp. I2R contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 211552 36 100.0 33 .................................... TCAACTTGCTGATCTCTCCGTTCGCCGGCGCGC 211621 36 94.4 33 ............G...............G....... GGTAGATTGTTCATAGGTTCTCCTGATGTAGGA 211690 36 100.0 33 .................................... TCTTGAGCTCGTCTCGCTCCTTGGTGATCTTGG 211759 36 97.2 31 A................................... CAGTACTTGATCGCGTTCGACACGATCTTTC 211826 36 100.0 33 .................................... TGTGACGTTGCGATCCATAATTACTCACTTTCA 211895 36 100.0 34 .................................... ATTCGATTTGACATAGAACCACCTCGCAGTAGAC 211965 36 100.0 37 .................................... GACGATCATGTTTTCAGTCTTTCTGATTGCCGGATTT 212038 36 100.0 32 .................................... TACACCTGCAGACATAAGTTGTCGCTTTCTTT 212106 36 97.2 36 ...G................................ GTGGACCGTATTCCAGCTGCTTCTCGCGAGGTTGAT 212178 36 91.7 33 ..................AT.......T........ CCATCTTGTTTCCTTCGAGTCCACGCGCATTGA 212247 36 97.2 33 ....T............................... TTAGAGCTCTGGTCTCAGGTCACCGACGAGTAA 212316 35 94.4 0 ...............................-...G | ========== ====== ====== ====== ==================================== ===================================== ================== 12 36 97.7 34 GTCACCGACGGAACCAATGCCTACGGGCACAGAAAC # Left flank : TGCCTGACTCGTCCCGACCAGGGCGATTTGGTACTCCCATGGGTGTGTGCGCTATTGTTTCTCACGGCCCGCACGAGAGTGCGGAGCCGCTAGGTAATCCCCTGTAGCTCAATTGGCAGAGCTTCCGACTGTTAATCGGACGGTTGCTGGTTCGAGTCCAGCCGGGGGAGCGCTGATAGACCCTCTGACCTGCGATCATATCGCGCGGTTGGAGGGTCTTTCTGCGTCGAGGGGTCGAGCGCCGCGTTCTCCGCCCAAGATGCCGACTCGGGTGCTGACGGGCACGCATCCGACGGCTTCGCTCGACGCGATTGGGATGGCAGTATGAACGGGTTCAGGTCGCACCCGGAAAATTGATCCGTGCAACAAACGATGCGTGCAGCCATTTCGCCAGGTCAAGTGGGGTCAACCAAGTCGGCCGGGCGGCTCAGACAACGCAGAGGGGGTGCGTGCAAGACGAGCAAGGAACTGCTGGTCACAGTGCCGAAAAATCGGGTAGG # Right flank : GGGAACGAATACGAGCAACTGAGATCGGGGGTGAGTATGTCAGAGGATTAGGTAGGGAATTCGTTCTTGGAATGTGCGGTTGCCGATGATGGTGCGGTGTGGCGCGATGGCGGGGAGTTGGTAAAGGCGGACTTGGTCTTCGGCGGGGTCGATGACGTTGGTGATGCTCGATCGGAGTGCTGCGAGGTCGCGAGATTTATTGATGTCGAGTTCGAATACGCTTTGCTGCACTCGTGGGCCGAGTTCGATGAGAAGGTCTGACAGTCGTGCGCGGCGCCGGTTGCATGCGATGTCGTACATTGCGAGCGCATATGTCATGTCGGATTCCTTGTGTCAGCGCCATGGCATTGGCGTGTAGTGGATATTGGGGGTCGAGACGATTCTGGCGATGAGGCGGGCCTGTTCGCCGAGGCAGTCCCTGTATGACATCGCGCGCTGATGGTGTGGGTGTTTGACTTGGGTTGATAGTCTCCGTTCGATTTCTGTGATCAGGGCATGTT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCGACGGAACCAATGCCTACGGGCACAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 230733-230902 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUTG010000004.1 Rhodococcus sp. I2R contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 230733 34 100.0 33 .................................. ACTGAATTGTGGAGGTTCAACTCCGAAGAGTTT 230800 34 100.0 35 .................................. GCGGTTGATGTCCCAACTCTGCATCGTGACTCATA 230869 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =================================== ================== 3 34 100.0 34 GTCACCGACAGCACGAACGCCTACGGGCACAGAA # Left flank : GTCCGCGACATGCATCGTGTACCAACAACGCCCAGCACAAAGGAGACATCATGGACTACCAGCAGCCCACAGCCGGGAACGTGAGCGAAGTGCGCTACGCCAAAGAACAACTCAAGATCCGCAAGAAGGCCGAGGAAATCCGCAAGCGCAATCTCGCCGCCGAGCTTCGGCGCAAGGCGCAGGAGACCAAGCAGAAGAAGTAGACGTCGGGTGCGTTCTGGGGCGGGTACAAACCCGCCCCAGAACGTGTCGTAGACAAAAAGCGTGCATCACAATTCGCGGAGATCGCCTCAGCGGCATCAAGCGTCGGTGGGCAGCCTCGATCGGACTTCCCAAGTGCCACCGTCGACGGAGCGCTCAACAGTGTCGAGGCGCGTGCAGTCATTTCCGCAGGTGAAGCCATGGCGGTGGGGCAAGTGTCGGTAGCGAGTAATTCCGGACCAGGGTGCATGCAACGCGACCGAGTAGTGCCAGGTCACAGCACTCGAAAATCAGGTAGG # Right flank : ATCGCTGCCCGTGTCGTGCTGGCTGACAGTCGCATGTCGCAGACCGAAACGATGGATGGCTGCGACCTGATGTGAATGCATACCGCTTCTGATCAAGCGGCGGGTTCCGTGGGTTATCGTGGTCGCCGTGCAGCGTTGGGAGATCGAGTTCAGTGGTGACGGCGCTCGGCTCCAGCCCAGGTTGCGTTGGTCGCAGTACCTCCCTTTGGGGCTGAATGTGGTAGGCGAGTACGAGAGATCTCATCACGGTGTGGTCAAGCCACACACCGTTCGGTCGGTGGCAATCGACCAGCAGGCATCGACGCTGACTGCGACCGTCTGCTGGCTCTCGGACCGCTACGTCCCTCCTATCGATCCAACGGTTCTTCCTGGGCGACAGTTCGAAATCGGCGGTGTATTCCTGCGATGCGTTGCCGCACGCCTCGTCGCAGACGTCCGTCAACGAGCCCTATTGGGTGATGCGTTCACAGATCCGTGGCTGCCCGATCCGGTAGACAGTA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCGACAGCACGAACGCCTACGGGCACAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //