Array 1 2823375-2822747 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034105.1 Proteus sp. GOKU chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2823374 28 100.0 32 ............................ TTGCGTTCATCTTCAAAACCACGAGATAAGAA 2823314 28 100.0 32 ............................ CATAGATGCGGCAGCGGCAGCAGCGCCCATTG 2823254 28 100.0 32 ............................ ATATCCATAATGAATGCCTGAATGGTTAGTGT 2823194 28 100.0 32 ............................ TAGACGTCAAAACCACTTCCCGCATCAAAATA 2823134 28 100.0 32 ............................ CGCAAGAGCAGGAACCATTTTAAGAAAGTTAC 2823074 28 100.0 32 ............................ GCATCAAAATAGTCATCATAGCAAATCCCCCA 2823014 28 100.0 32 ............................ GTTTTAATTTTGACGTATTGGAGTTAGATCCA 2822954 28 100.0 32 ............................ TATGTGCAATGACGATGAAGGAATGTTGATTT 2822894 28 100.0 32 ............................ AGTATCTAGCGTCATGCTTTTATCGGCTTTCT 2822834 28 100.0 32 ............................ TCACTGTCTCCCTAGGCATGGGGATAATTCCA 2822774 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCTCATAGGCAGCTTAGAAA # Left flank : TGTTAGGGAATATGCCTGTTTTACGCGCCATAATCCTAAATCTCAACAGCATCGCTTAAAGCAACTGGAACGCCGAACTTCCTACTTAGCACAAAAACATGGAGTTGATGAAGATATTATGCGGGCGGAACTTTTGGCATCAATTGAGCAAAAATCGGGTGAAAGTAAATTGCCATATATTAATGTGCAAAGTTTATCAACATCTACTGAACCTCAGTTACGTCATAAGTTTATGCTTTTTATTCAATGCGATAAGTCAAATTCGCAATTGGGCAATATCAACACATTTTCTTGTTACGGTTTGAGTCAAAAAGAAAAAGGGAAGCAGACTTTTGTACCTTGGTTTTAGCCTAAGTATTCAATGGTGAAACCCTTTATTTTTTGCTCTTTAAAAATCACAATAAAAACAACAAGCTATATGCAGGCGTTTTTAATAAGGTAAAAAAGGTTAAACCTTGCTAACGCCTTGCTGTAGCTTGTTTTTTCGTGATAATGCTAAA # Right flank : TTCGGTAACAGGTGCTTAAGATGATTGGATTTAATTAGGTGACATCAGACTGCGCGGGACAAATTGCAGACACAAAAAAGCCCGCAGGGCTTGCGCTGTACGGGCTCTTAGGACTTCATCGGATGACTCTGGTAATCACCGATGGAGAATTTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTTCTACATCCTCGGTACTACATGCTTAGTCCATCTTTAATTTCACTTACCCACTGCGGACAGACGCGCCATGAATAAGCTAGCTTGATTAAGTTTAACGCTTTGACCCCAAGCTAGGTCTCCACGCGATCTCTTTTGGGTTTGACCTCTCTTGATCCCCGTCTTAAGAGCGGAAGCTAGGGAGAGAGGGCTCTAAGCAGGTTATTAAGCTGCTAGTGCTTCGTACTGATTGTCGTTTGCGACTATCTTTTTTGCGGCTTTTTACGAGGCCAACCGCCCCTCGGCATGCACCTTGGGTTTCGCAAATCCCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCTCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2834242-2832112 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034105.1 Proteus sp. GOKU chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2834241 28 100.0 32 ............................ TATAGATGCGGCAGCGGCAGCGGCGCCCATTG 2834181 28 100.0 32 ............................ ATAGAAAACTTTATTGCTATGTAAGTCTGTAT 2834121 28 100.0 32 ............................ AGAGACGATAAAGCCTTGATTGATGATGGATG 2834061 28 100.0 32 ............................ CAAAGGTTCTAGGTGGGGTTGAATATCAACCG 2834001 28 100.0 32 ............................ ATTGCCAAGTTCGTCGTGAAGTTTTCTTGCTT 2833941 28 100.0 32 ............................ TTAACCCAATTAGTTCCCTGCATTAGATGCCT 2833881 28 100.0 32 ............................ AACGAGCCTTTTTCAAATCTTCGACTGGGTTA 2833821 28 100.0 32 ............................ TACCCAGTGCAAACCAGTATTAATGGCTCTTC 2833761 28 100.0 32 ............................ ATTCTAATTATCGAAATCCTAGACAGCATTAC 2833701 28 100.0 32 ............................ TACATAATAGGCATCCTCGCCTAACGGATCGA 2833641 28 100.0 32 ............................ TAATTCGAGCGGTGCTTTTGGTGCTGTTAAGC 2833581 28 100.0 32 ............................ TCATATCGAGATAAGCAGCCCCTAGGGGTGCT 2833521 28 100.0 32 ............................ GCCCCAATTTTCAGCACCAAATCCGTCTGTAT 2833461 28 100.0 32 ............................ TACCGATAATCAGTAAACCAGAATGTTAGATT 2833401 28 100.0 32 ............................ TGCAACTCAAATTGTTTAGGCAACATAGTGCC 2833341 28 100.0 32 ............................ TTTCTTAAACTAATAACACCGTAGCAATAATT 2833281 28 100.0 32 ............................ AGTGCGCGGTAAGTAAGTAATTTGAGCCATAA 2833221 28 100.0 32 ............................ TTGGTCTTACAATAACAAAGTTTCAAATGGCG 2833161 28 100.0 32 ............................ TATCTCTAATTTAGGGGGTATATTACCGCCTA 2833101 28 100.0 32 ............................ ATTAACGGACGAAATTCGTCAAAGGATGGAAC 2833041 28 100.0 32 ............................ TCGATAGTCGATAGCAGACTGCGCATCTAAGC 2832981 28 100.0 32 ............................ TAGCAGATATTTTTTTGAAACATCATAGAATC 2832921 28 100.0 32 ............................ GCGCTAAACGTGCAGGGCAAAAAGTCGAGCCA 2832861 28 100.0 32 ............................ ATTATCAATACCAAGTAACCACTGTTCAAACA 2832801 28 100.0 32 ............................ TTATAGTAGCCATTGCGGTAGAAGATACGCAC 2832741 28 100.0 32 ............................ TGTGTAGATTGATAGCTGTCTTAACGCATCCC 2832681 28 100.0 32 ............................ ACGAAATAAAATCATTCACCACGTAAAACGCA 2832621 28 100.0 32 ............................ ACCACACGCACACTTTCAATCGCTTGAAAATC 2832561 28 100.0 32 ............................ TTAACCCGGAAACACCATTAATACCTACTTTA 2832501 28 100.0 32 ............................ GGTAACTCTGAAGGTAATGACCCTGACGGTTC 2832441 28 96.4 32 ..........A................. AAGCCTAAGCGTTCACGTAAGAAACAAGAAGA 2832381 28 92.9 32 ..........T......T.......... ATGATAAAAAATCAGTTGATATAGCGGGTAAA 2832321 28 89.3 33 ........T...G..A............ AATTCCAGAAAGTGCTAATGAAGATATGATTAT 2832260 28 96.4 32 ............G............... AAAGTGGAAACGTGAAGATTATGAGCGAATAC 2832200 28 100.0 32 ............................ TTTATAATAATTTCTGTTGTATAACGCTTAAC 2832140 28 89.3 0 .......A..A......T.......... | G [2832114] ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTGGACTAATAATGAAGATAGGTTTGCAATTCTTAATTATGGTTTTACATGTAACTATACTTCAGGGATATGTTTATTATTGATAGAAGATTTAGTGGGTACCATACATCAAAAAGATAAAGAGCAAGATAGAACCCATTTAATGCAATTCTATCATCCATTCAAAGTTGAATTTTACCAACATAAACCAAACCCCTTTGGTCCAAAAACCGCTCGAGTATTACTACCAGTAACATTAGCGTTGGATATTGTGACATCACCTTTGCAGTACCTGTATTTTACAACTAAGAGATAATTAGGTAGGTAGTTATTGTGAATATAGCTGGAACGTCGAACTTTGGCTTTGACCTAAGTATATTCAAAGGTTATACCCTTTATTTTTCTCTCTTTAAAAACCCCAATAAAAACAATGGATTATTTGCTGATGTTTTTTATAAGGTAAAAGTGGTTAAACCTTGCTAGCACCTTGCTTTAGCTCATTTTTTTGTAATAATGCTATT # Right flank : TTTATTTAATATATTTAAACCTTTCGCTGTAGTCACTAAAACATATTTCGCTTCTATATTCCTTCCTTATTGTATTTAGAAATAGCTATTTGGCGTTTTTGATAATTAAATTTTCCTTAATAGTTCACATATATGCAATTTGCTCATGTCATGCTTACTCCTTAATTGATATTGTTTGGAGGTGACTAAAAGAGGCTAAAGTAATGGAAGATTTATCCCCCTCCGATTTGAAAACCATTCTTCATTCTAAAAGGGCCAATATGTATTACTTGGAATACTGCCGAGTGATGCAAAAAGATGGTCGTGTTTTATATCTCACAGAGTCGAAAAAAGAGAATCTCTACTTCAATATTCCTATTGCTAACACTACCGTTTTATTACTTGGTAATGGGACATCAATTACTCAAGCCGCAATGCGTATGCTTTCACAAGCCGGTGTATTAGTAGGTTTTTGTGGTGGAGGCGGTACACCACTGCATATGGCGACTGAGGTGGAGTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //