Array 1 7460-6323 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJF01000016.1 Listeria monocytogenes strain FSL L7-0437 NODE_16_length_22170_cov_41.151496, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================================= ================== 7459 36 100.0 30 .................................... AATAAAAACACCTCGCTAAGAGGTGCTTAA 7393 36 100.0 30 .................................... GCATTCGTTGTCACATGTGCCACGACTTGA 7327 36 100.0 30 .................................... ATGCGAGACGGTAGAAAGAAAGTATGTGTT 7261 36 100.0 30 .................................... ACAGTTGGAAAAATGGAATTAAAAATATGG 7195 36 100.0 30 .................................... AAAAAATGCAGTAGATTAGAATTGAGAAAA 7129 36 100.0 30 .................................... TTATGTCTTTAAAGACAAGTAACTTTCGTG 7063 36 100.0 30 .................................... TATGCGGTGTTAAGCGTCTTAATTTGCCTT 6997 36 100.0 30 .................................... TGGCCCCACGCATCGATGAGGACAAAGATT 6931 36 94.4 30 .............................A....G. AGAACTATTGCTTCAGTTATAATAGATATT 6865 36 91.7 34 ................T............A.....T GAAAAGAAAGTTGGATGTTTCACTTGATGTTATT AT [6848] 6793 36 80.6 27 .......G...G...............A.G...GCT ACCTTTAAAGGCTTCGATGATTAAAGC A,G [6759,6768] 6728 36 88.9 29 ........A......A.........A...G...... AGATTAACGTGTAGAAGAGCCCTAGCAAT 6663 36 91.7 28 .............................G....TT TTATTCAGCACCAGGATTAGAAAGGCAC TT,T [6638,6645] 6596 36 91.7 137 ..............C..........A...A...... AAAAAAGATGTTAGAAGAATGAAAGTTCGATTGATTTTAGAGCTAAGTTATTCTAACAGTACACCTATTTATAAGAACTGAGCTATGTAATTTTTATACTTAGCAAACTATGGTAAACCGTTATCTCTTAGGAAATG 6423 36 94.4 29 .........T....C..................... TACTAATTTGAAATCTATTGTGGAGTGTT 6358 36 83.3 0 ..............C..........A...GT..GG. | ========== ====== ====== ====== ==================================== ========================================================================================================================================= ================== 16 36 94.8 37 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTACGAGCTTCTGGAACATGAACTGGATTTAGAGGAAGATGAAATTACAGTTGTTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCATTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGACGATATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTAGAAAGATAAAGGGATTTTCGCAGGTTATCTTAGATTCAGATTATTTTTTACAAGTGGAAAATGGAATGTAAGTATCCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAGG # Right flank : TAAAGCTTAGGAGATTATATGGACAAAACAATGAGCCTATAAAGTGTTTTTTTAGTGAGCGGAAAATAAATATGTATCGCTTCTATACATACTCAAGAGATGAAATTAAAATATAGCATCAAAAATCATCCTGAGTAATAAGCCACTGTAGACTTTGGTTCCTTGTCATTACCTTTTAAAAAGTTTTTTCTTTGTCGTTTATCATCTACTTCTTCAAATTCTGCGTTTACTATGGCAAGTTAATGCAAGCTCAAACGAGGATAGGCTAGAGCTTAGCTTAATTGTGATTCTAATTTCATTCAACAAGCATGATTAGTACATCAAAAACATGGGAGAGAAAAAAAACAACAGAAATCCTAGGGAATTTAAGTAGCGTATTGTTGATGGTTAGGTCTGTGTTAACTGGATTTAAGAGAAAGAAATATATTCGTAATGGATTAAGCAAAAAAATAGCCAATCTACTCTGAGTTAGTACAAGAATAGATTGGTTATTATAATAG # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.63, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 73783-74394 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJF01000009.1 Listeria monocytogenes strain FSL L7-0437 NODE_9_length_91988_cov_21.956882, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 73783 29 100.0 38 ............................. CTTTGATTTTCCCGGAGTTTAGCTTTGTGTTATTCCAT 73850 29 100.0 35 ............................. TTCTTAAATCTCATGGGTGGGAAAGCGTTAGACAT 73914 29 100.0 38 ............................. GTTTTTGTTATAACCGTGTCAAGTCCTTCATCTACTTC 73981 29 100.0 35 ............................. AACGTTTATCGATGGGGAACATATAGTGATCAACA 74045 29 93.1 36 ..........A...T.............. AAGCTTTTGCATTCTCTTCATTCTCTGCGTGATAGT 74110 29 93.1 35 ..........A...T.............. CTTATTCCATTTCCTGAGCTGAGCGATACTCGTAC 74174 29 93.1 35 ..........A...T.............. AACAAGAAGTTATGTGGAACACGTTTGTTTTTAAT 74238 29 93.1 35 ..............T..........G... TTTGCTGATACGCTTTAAAACCATTCATGTTTTTC 74302 29 96.6 35 ..............T.............. GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT 74366 29 75.9 0 A.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 94.5 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCTGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAATTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGGAATCTTCCAGATAAGGGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAACCAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTAATTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //