Array 1 350057-353726 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYUN01000001.1 Listeria monocytogenes strain LM10-00505, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 350057 36 100.0 30 .................................... ATCCCTCCTCAATAAAATAACCGCGCACGC 350123 36 100.0 31 .................................... TAATGGTTTGCATATTCTCTTGAACAAACAC 350190 36 100.0 30 .................................... ACGTCACCAAGCTTGTACTTGATATAGTCT 350256 36 100.0 30 .................................... TCATCGTAGAACACTCGTAACCAGATGCTA 350322 36 100.0 30 .................................... TAAAATTAGTTGGTCAAACAAGATAATACT 350388 36 100.0 30 .................................... TTCCCTAAATCCTCAAACTTTGTACCAAAT 350454 36 100.0 30 .................................... CGGTCGAAGCATTCGCACTTGTTGCGGTAG 350520 36 100.0 30 .................................... TTTTTGAAATGAATAACAACTAGTGGGAAT 350586 36 100.0 30 .................................... TCTGGACATTTTAGATGTAGAAGGAAAACG 350652 36 100.0 30 .................................... CATAGGTTCGCGAATTCGATTGAGCGGCAT 350718 36 100.0 30 .................................... GCAAGGTAAAAATGTAATTGTTGAGTATAA 350784 36 100.0 30 .................................... TGGATCTACAGCAAGTGGTTCCAAGAGTAC 350850 36 100.0 30 .................................... TAACTGTTTCCTGTTTAATAATATTGCCAA 350916 36 100.0 30 .................................... ACATTCTATAGAATATTATAAAAGCAAATA 350982 36 100.0 30 .................................... CAGAATAAAGGAAAATGTTTTTGATAATAA 351048 36 100.0 30 .................................... ATGCGTGGTGGTTGTCCAGCCCGTTCAGTA 351114 36 100.0 30 .................................... AGAAAATCTACGCTTATGACACGATCGAAC 351180 36 100.0 30 .................................... TTTCTTGCACCCGCTGTGAAATATCTTTCT 351246 36 100.0 30 .................................... GTAAATAATCCTGCACATTACACAGCAGGT 351312 36 100.0 30 .................................... TACTATTCTTAAACAAAAAGGATTAGATAT 351378 36 100.0 30 .................................... TGGATTGCAGAACAATTACGTGAAGAATTT 351444 36 100.0 30 .................................... CAGTGAATAAAGAAGTAAAGAATTTAGAAT 351510 36 100.0 30 .................................... ATTGTTAGTGGAATTGTAGGTAAAGGAACT 351576 36 100.0 30 .................................... TTGTGATTTGCCATCATTAACAAAGTCACA 351642 36 100.0 30 .................................... ACCCCTCTTGAAATTGAGACGAACGGAGGG 351708 36 100.0 30 .................................... AATGAATTTATAGCATTTATCGAACCAATT 351774 36 100.0 30 .................................... CACTGCTGTAGCCGCTGTTTTAGCCGCTCC 351840 36 100.0 30 .................................... AAAAACCTGTTGTCCCCTCCGCAGTGGCTC 351906 36 100.0 29 .................................... AAAATAAATCATTCTATAACACGGATGCT 351971 36 100.0 30 .................................... CTTCGGTGTATCCTGCCAACCGTAGCGCTT 352037 36 100.0 30 .................................... TTTCTGTCAGTGTTTCATCAACACTTATCA 352103 36 100.0 30 .................................... GAAAACATCTATCAGACTCAAGACCAAACT 352169 36 97.2 30 .....................T.............. TTGATGAAAGGTGTTAAGGACATCATAAGC 352235 36 100.0 30 .................................... AAAATATAATCAGAAGGTTTCGGGCTACCT 352301 36 100.0 29 .................................... TCCAATGCTTTTTTTACATCTCTCGGAAT 352366 36 100.0 30 .................................... TTGGATATTAACCCTTTTCAAACATCCGCA 352432 36 100.0 30 .................................... CCCTGCTTTGTTGTACAGGAAATATTATTC 352498 36 100.0 34 .................................... ACCTTACGGAAGATAACCGCATTGGCTTGAGAAT 352568 36 97.2 30 ..............G..................... TCAGCAAGATTTAGATCACTACTTGTTCAC 352634 36 100.0 30 .................................... TTCATCTGTACCCTATCAAGTATTAGCCGA 352700 36 100.0 30 .................................... GCGGCTAAAGTGATTTGACCTTTACAATCT 352766 36 100.0 30 .................................... TACTGCTCCATTTGTCCCTTTCGCAAAGCC 352832 36 100.0 30 .................................... GCATTAAAGCATTTGCGCCACGCAACGTTT 352898 36 100.0 30 .................................... AGTTATTTGGAACAATGGTAATGGAACACA 352964 36 100.0 30 .................................... GACTTCGAAATGGAGTTATTGACTCTCAAA 353030 36 100.0 30 .................................... AAGAGCCGGAGCTACTTCCTGGCACCACAC 353096 36 100.0 30 .................................... TAACTCACTGTCACTAGCTCCTGATGTTGT 353162 36 100.0 30 .................................... AGAATTTCTCTTTGATTTTTTGTATAGTAC 353228 36 100.0 30 .................................... TTGTTAGCAGAATCACGACGTACAGAAAGT 353294 36 94.4 30 A..................G................ AACAAAATCATCATTACCTGTGGAGCTGTG 353360 36 100.0 30 .................................... AGAATTGTTTACATATTCGTCATCCCAGTA 353426 36 100.0 30 .................................... TCTGTTTGCAGGCATTGGCGGATTTCGTTT 353492 36 100.0 30 .................................... TAAAAGTAATGAATTATTCAGAACCAAGAA 353558 36 100.0 30 .................................... TTTTTTGATCTATTAGTAAACTGTTCGAAT 353624 36 100.0 28 .................................... TAATATTCTCCCCCCATCGCTAACAGGG 353688 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [353713,353719,353722] ========== ====== ====== ====== ==================================== ================================== ================== 56 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAATTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //