Array 1 74848-69360 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIUF01000017.1 Vibrio cholerae O1 biovar El Tor strain NALMLE04 NODE_17_length_88201_cov_29.0782, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 74847 28 100.0 32 ............................ AATTACATCCTACAAAATAAACAAAGCTACGT 74787 28 100.0 32 ............................ ATTGGTGCAACTCAGAAAGAATTGGGAGACCT 74727 28 100.0 32 ............................ AGATTGGCTGGGGAAAAGCATCTGAACTCTAA 74667 28 100.0 32 ............................ TAGCAAGCTTTCCATCTTTTCAGGGTCGAATT 74607 28 100.0 32 ............................ TGCACCGTTAACAACTAATGACTTAACCCAAT 74547 28 100.0 32 ............................ TGCCATCGCAATCGCTGATTATTGTCGATGCC 74487 28 100.0 32 ............................ TCTAATCATGTCAACAAAGTCCATAACTGCTG 74427 28 100.0 32 ............................ TGCCGCACCAGAGGCTAAAGCCGTCCATTGAT 74367 28 100.0 32 ............................ TTCTGCGATACCAAACTGACCACCGTGTAAAA 74307 28 100.0 32 ............................ TTTAACTAAATTGCCAAGCACAAGCACATTAT 74247 28 100.0 32 ............................ TCATCTCTTGATACTGAGGTAGCATCTACCCG 74187 28 100.0 32 ............................ CTTAAGAGGAATGGGGGTGTATCCTAGTTCTG 74127 28 100.0 32 ............................ CATTGGCAAAAGCCAGATCATTGCCATCCCAG 74067 28 100.0 32 ............................ TATGGTGAAATTAATCAAAGCTTAATCCTCAT 74007 28 100.0 32 ............................ TAAAAGCAAAGTGGGTGCCGAAGGTGAGGACA 73947 28 100.0 32 ............................ ACGCCAAGAACCGGCTTGTTTGGCCGCTTTAC 73887 28 100.0 32 ............................ AGTTCCAACTCTTCTGAATTGCGTTGTCATAG 73827 28 100.0 32 ............................ TTTAAGCACAGAAGCAGAAGCGTTACTCAACC 73767 28 100.0 32 ............................ TTTTACGCCAACAACGGCCAAGACGAAGACAA 73707 28 100.0 32 ............................ GTAAAATTGTTTCTCACGCTTGATTAAGTCTG 73647 28 100.0 32 ............................ TTGATTGGCAACCAACAGCGCCTTCAAAACCC 73587 28 100.0 32 ............................ TTATAGCCTAATAGCATTGACTCATAAGCATG 73527 28 100.0 32 ............................ TCGGCGATAAAGTGGGCGCTCAGTTTGTTGAT 73467 28 100.0 32 ............................ TCTACGAGAAGAAAGGCCAGCGCTTTTTCAAT 73407 28 100.0 32 ............................ TCTTCAGAGATGCAGTAACCGAACTCATCAAA 73347 28 100.0 32 ............................ CGCATCAAACTGCAGGCGGTTGCCGTCAATGA 73287 28 100.0 32 ............................ AAAATTTCACCACGGAACATGTTATGTCACAT 73227 28 100.0 32 ............................ TGAGCGATGGCTTTAACGGCTTTGCTTCGTTC 73167 28 100.0 32 ............................ ACCAACCAAAGCAGCAAATCAGCCACATTCAT 73107 28 100.0 32 ............................ CGTAACACTGCGCGTAGCAACCGTAACAAAGC 73047 28 100.0 32 ............................ TTTAGTTCAGAATTTGGAATAACCTTGCCGCA 72987 28 100.0 32 ............................ CAATTCCTCGATCTCAGCATGTTTTATTTCCA 72927 28 100.0 32 ............................ TGACTTGAGCTGTTAGGCCGCTTTCCTGCGGA 72867 28 100.0 32 ............................ TTCATCATCGCGATTCGTTCGCGACGCTCGTC 72807 28 100.0 32 ............................ AAGGCTCGTTCTGGATGCTTGCTTCGATTTGC 72747 28 100.0 32 ............................ TCGCGAAAAGAGAAAAGCGCGCCGAAAAAGAT 72687 28 100.0 32 ............................ TCTCGATTGGCGATCTCGCTCATCAGCGACAG 72627 28 100.0 32 ............................ GATGTGGACTCCGCAAGAAAGGTAGCCGGAGC 72567 28 100.0 32 ............................ TTCAAAAACGGATTGATGCCAACGGTCGCTTT 72507 28 100.0 32 ............................ TGATTTTATTCCATTAACCTGAACATCAGTTG 72447 28 100.0 32 ............................ TATCTTGTCCGCACTAACACCTTGCTCAAGAA 72387 28 100.0 32 ............................ TCTTGGTTGGCGCAAGGTAAATCGTCAAACAA 72327 28 100.0 32 ............................ AGATAGCAGTTATGTCGTTGACACTATTGCCG 72267 28 100.0 32 ............................ TTTTCGTTTAGTACCGTCAGGACATCCATTTG 72207 28 100.0 32 ............................ GTTACGTAACGGAAACCGCGCTTATACATTTT 72147 28 100.0 32 ............................ TCATCGCTGTACGGTTGCAAGCCGTTTTCGTG 72087 28 100.0 32 ............................ TTGGGTGGTGGTTTTGCTTGCGAGGAAGAATT 72027 28 100.0 32 ............................ AAGAAGATTTGTTTGATGTCATTTTTTTAACT 71967 28 100.0 32 ............................ TTCATGATTGCTGAGCGATTGAATTTGCCGTT 71907 28 100.0 32 ............................ TTGGCTGCGTGAGCAATGTATGACTCTGTGTT 71847 28 100.0 32 ............................ ATTAACACCCAAGAATCGTACTTGACACTCAG 71787 28 100.0 32 ............................ TGACAGAGAAAGCGATGCTTTACACAATCCCG 71727 28 100.0 32 ............................ TGTGCGTTTGCGCGCTTATTCTTTTTGCTGAT 71667 28 100.0 32 ............................ TGATTCATAAGCAGCTTTGACTCGCTGAAAGT 71607 28 100.0 32 ............................ TGTATACATGCCTTCTGGGTGCGACTTGGCTT 71547 28 100.0 32 ............................ AGTTACTGATCGATGAACATAGCTTAGAGAAC 71487 28 100.0 32 ............................ TGGCATTGCTAACCCACAAAAAGAAGCCGCCG 71427 28 100.0 32 ............................ TTCGGCATGATACACGATCACATCGTTTGGCT 71367 28 100.0 32 ............................ TGTCGGGATCGTAATTGGACCAATGACGTTAT 71307 28 100.0 32 ............................ TTCGGGCGCTCGAAAATTCCATCCGCTGATAT 71247 28 100.0 32 ............................ AAAATTCCCCCTCTCGCAAAAGAATTTTATGC 71187 28 100.0 32 ............................ TTTTCGCAAATACTCGCCACAGACCTCGGCTA 71127 28 100.0 32 ............................ TTACTGTTGTACAAACTATTTATAAAAAATTT 71067 28 100.0 32 ............................ ATTACACACATCAGTGTCGCCGTTGAGTACAG 71007 28 100.0 32 ............................ TTCTGCCTCTTCGAGCAGAAATTCAACCCCAC 70947 28 100.0 32 ............................ ATTTTACTTACCTATGGTGCGGCGGTATTGCC 70887 28 100.0 32 ............................ TCCGAGTCCCGTCGTCGTGCGCACACTGCCAA 70827 28 100.0 32 ............................ TTTTTCGAGGATGGACTGCATCACCGCAGAAT 70767 28 100.0 32 ............................ AATCGAGGTGATAGCCTGATGTGACGATAGCC 70707 28 100.0 32 ............................ TTGAATCGCAATCTGTGTCTGGCTCACCACTT 70647 28 100.0 32 ............................ TGAAAGATTCAGGCCTTGATATCTGGACTTAC 70587 28 100.0 32 ............................ TCTAGACCTTCTCGGTAAACCTTGTTTGCTGT 70527 28 100.0 32 ............................ TTATAGGAACTTCTTAGCAAATTTATACAGTC 70467 28 100.0 32 ............................ TTTGAGACCAGTACCCATCTCGCACGAAGAAA 70407 28 100.0 32 ............................ TGAATTGAAAGCGACCGTTATCAAGACGTTTC 70347 28 96.4 32 ...........T................ GCTAATCGAGGCACTAGAGGGGCAGAAGATGA 70287 28 96.4 32 ...........T................ AGTTGGATCTTATGCGTATGTGGAGAGGGGGA 70227 28 96.4 32 ...........T................ TATTTGCGGGAAAGAATTCAAGCAAAGAAACT 70167 28 96.4 32 ...........T................ ACCACTGACAGCGCCATTAGCCACATTATCTG 70107 28 96.4 32 ...........T................ TTGCTTTGAGCTGGGCACTGTCTGAGCCGTGA 70047 28 100.0 32 ............................ TAATGAAGACGTTCGTTCTCTCTTAAAATCAA 69987 28 100.0 32 ............................ GTCGAGCATTTGAAGCAACCAAAAGTGAAGCT 69927 28 96.4 32 ...........T................ GCAAGCAGATGAAGATGGCATCAGGCGAAGGC 69867 28 100.0 32 ............................ TGAAGCTCTCTTACTCAAGAGAATCTGTGATC 69807 28 100.0 32 ............................ TATCGCGATCAGTCGGCGTTGTTTCCACCGTC 69747 28 96.4 32 ...........T................ GGACGGAGCGGCGCTGAGCGGAGGAGGACGCG 69687 28 96.4 32 ...........T................ GCTTCCAGCGTCATCGCTGGGTTAGCCAAGGC 69627 28 96.4 32 ...........T................ AAACAGCTCGCTATGCCGATCACTAGAATTCG 69567 28 96.4 32 ...........T................ AGTTTCTTGCGTGTTTTGGTCAGAAGATAATG 69507 28 96.4 32 ...........T................ TGCCAAAGGGTGCAATCATTCTCATTGATGAA 69447 28 96.4 32 ...........T................ TTTGCATTCAAAAGCATCACAAGAAGCGCCAG 69387 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 92 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACCGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGCGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGGAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCACTGCGTACCTGGTTATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //