Array 1 12773-14071 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOL010000010.1 Thermoactinomyces mirandus strain AMNI-1 contig_10_(1..24054)_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 12773 30 100.0 38 .............................. ATAAAATTTCCCGGCGTATAGGTCGGGTTGGTAACCTG 12841 30 100.0 36 .............................. AGCTAACTCACGTTCAAAAAAAATTGCATCATAATC 12907 30 100.0 40 .............................. AAAACGGTCGAAAAGCGGTCAAATCAAGTTCAATACCATA 12977 30 100.0 37 .............................. ATATCTTGACCGGAGAAAAGCTTACACCTGAGCACAG 13044 30 100.0 36 .............................. ACCAAGAATGAATTGCGCGAATGGTTGGGATATGAA 13110 30 100.0 34 .............................. ATGGTCGCTAGATAGCCCGAAACATCGTGATTTG 13174 30 100.0 37 .............................. CCCATATAGTCCTGATAGTCCCACGACGGCATTTGAA 13241 30 100.0 37 .............................. CAAACCCCCTTGTGCCGATAATCCGTCCTTCATCATC 13308 30 100.0 36 .............................. ATATCGCGATATGCCTACGAGTTACCCCAGCGCCGA 13374 30 100.0 35 .............................. ATCGTCGTGTCATTGCGTATTATTCATACGCGCAT 13439 30 100.0 36 .............................. AGCTATACCTCGCGTATGATCCCGTAAACAAACGAA 13505 30 100.0 35 .............................. AAATCAAGCCACTCACAACCCATCGTAATGTCCAG 13570 30 100.0 37 .............................. ATGGTTAAAATGGGAAAAGAATAGGTTAATACGAATT 13637 30 100.0 37 .............................. AGGACACATATTGAGAAAGCCAAGAAAGAACTTGGCA 13704 30 100.0 37 .............................. TGTTGACAACATCGACATGGCCGACTTGAACAATGAC 13771 30 100.0 36 .............................. TCTAGCCATGCGAAAGCTTGGCATGTGCGAACAGGA 13837 30 100.0 37 .............................. TAGCCACCGCAATGGTTATTTCTTGCTGCTCTTTGTT 13904 30 100.0 40 .............................. GAATAAGCTTGGTCATGAAGCTTTTTCCGGACATTTGTAG 13974 30 100.0 38 .............................. AATTTCAGTTCCAATTACCGCGACCTCCTTCCGATTCG 14042 29 76.7 0 ..................T.TC.-...TCT | C [14062] ========== ====== ====== ====== ============================== ======================================== ================== 20 30 98.8 37 GTTTAGATCGTACCTATGAGGAATTGAAAC # Left flank : TCCAAACTCCATGAATGCTTATGATTTGGTTAAAGAAAAATGGCTTGATGAAGAGGAATATCTCTGAAAAAGTAAAAAAACCAAGGCCTGGGGTATGTCCTCAAGCCTTTATTAATGAAAAAATACTGTTAACTTCCCCTTTGCCAAAGAAGGTTTTGTTGATTCAAGAAACAGCTGGAATTTAACCAGCAAAAACAAATATCCATGAACTGGTAAATCATACGGAGAAGAAAAATTTGAATAAGGTACTTTCTTACGACTTTCCTCCAGAAACTGATATGGTTAAAATGAAAATATGCCTCAGATGAATTAGTGGTTATAATTTGTCGTCGACCGTGAGTAGAGGAGTAAACCCGGGAGATCGACGACACCGAATATTCTGATAAATATTCTGGAAACTAGCATCATTCCTGGATTCTTTATTTTTTCGCTCAAAAATGAGTTCGTTAAGAGGAAAATGGGGTCATTTGTAGAATGGCTTAATAACGGCACTTTTTGGG # Right flank : TTCTTTGTACACTTTCGGGAGACGGGAGAAGCCCGCATCCCAAACGGTCTTCCGTCATTCACCTTGTAAATCTTTCATGGTGTTTATGGCGAATTTTGCATAATGATCTGTTAGTCCTTTCTTGAACCAGCCACGCTTTTTTGGAAGCCTCCCTATTTCCTTTTCAGCTGCTTCACCATCTGGATCGCTTTGGTCCTGCTTCCTAGATTTGGTTAAAGGAGTTTACTTGCCTTCGATTTTATATGAAGTGTGAATTATCTCTTTATTTTGACCGCTTCGATTGTTTTTAATCCTATCTATATTGCTGTCAATAGGATGCTCTTCACTATATCTGGAGAAGAATGTTTCGGTTCTCTCCAAGGGCCAGAGGGAGCTTTTTATTTTTATCTCTTAACGCTTGGTTAAAATTCAAATCATCCTCTTTAAGCCACCTGATAACTGATCATTGATCTCCTCTGCACCCATCTTCTCTTGATCATCTCGTCGAATTTCCTTTATCT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 99054-99758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOL010000025.1 Thermoactinomyces mirandus strain AMNI-1 contig_24_(1..139849)_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 99054 30 100.0 37 .............................. AAAAAGAAAGGAGGGTAATAAACCCACCTTTTTCGTA 99121 30 100.0 38 .............................. CACTTGGGCCAGCAAAAAGGCCGCCGCTTTGATACCAC 99189 30 100.0 38 .............................. GCGAAATTATGCATGTCGTAGTACTCGGCAGCAGCAGG 99257 30 100.0 38 .............................. GGAACAATATGACTATCACTAGCAGAGCAAGTCCATAA 99325 30 100.0 37 .............................. AAAAATACCCAACCATGGATCGACTGCCTGGCACAAG 99392 30 100.0 35 .............................. TGTTGATGTGAATATCGGCCCGAATGCTCCAGCGG 99457 30 100.0 35 .............................. TTCGACTGCGTGCCGGAACATTTCCGGAATAAGCG 99522 30 100.0 40 .............................. TGATGACCTGGGGAAAGGATGCGGTAGATGTCGCAAAACG 99592 30 100.0 40 .............................. TATGTTGCCTTGAGAATTGCCCGTACATTAAACGAAACCG 99662 30 100.0 37 .............................. CAGGAGGAGTTAGTAGACAGTCATGTCTATAGCGAAA 99729 30 86.7 0 ...............G.......AAT.... | ========== ====== ====== ====== ============================== ======================================== ================== 11 30 98.8 38 GTTTAGATCGTACCTATGAGGAATTGAAAC # Left flank : AGCCATGAACTATTTTCAAAAAGCGCTGGATATGGCTAAGAAGCACCAATTGGATGACAAGAAAACAGAACTGCTTCTTTTTCTGGCCCAGTGCTTCATTCAACTGGAAAACCCTCGATTGCAAAATGTGGCTATGGATTTACTTTATTCCCAACTGGAAGCTTTAAAAGGGGGTGACGACAGCATGGTTAATGCAGTAAAACGTCATAGTGCAGGCGATCCGCCTGGTGATTAAGTCAACTTTATGAAATGTATAAAGGAGGAGAGAGATTTTCAGAATTTATTCTATCTCTTCCTTGGCTGTGCTGTATGTTTAGTATTAATTTGTCGTCGACCTCCAGTAGAGGAGTAAACCCCGGGGATCGACGACACGGAATATTCTGATATTATTTCTCAAAAACAGCATCATAGCTGGATTTTTTGTTTTTGAGTCAAAAATCAATTTATAAAGAGGGATTTCGATTAATTTATAGAATGGCTTAATACCGGTATTTTTTGGG # Right flank : CAAACCAAAGCCAGTTCGCCAAACAGACGGGCTGACTTTATTTATGTGTGCAAAATCCTGTATTGGTTGTGGTTATTCTTTTCCGTGATTCATAACTTAAAGGGAGGTTCATCCCGTTATGGGAAACGCGTGGCTATGAGCCGCTATTTCAGACCACTTATGACCATTATTCTTTTAATGTTCATCGGAATGGTACTTCCGGTGGAAGGCAATGCCGGCGGGAGTTTTGATGTTCCCAAGGTTGAGGAAGATTTCGGGCAATATGATCAGGCACCTGGACAAGCAGAGCCAATAGAACCTGTTTCCCCTGACGTTCAGGGAGAAGGTGGTCTCTGGGATCGTCTTACCGAATCCGCCTCCAGTGTGTGGGAATGGAGCAAAGAAAAAGTTTCTGCCGCCTGGAACTGGACAAATGAAACAGCTTCTGCCTTTTGGGATGTAATTGTGAGAATCATTGCAAAAATCGCCGAAGTAATCGTCGATGCCCTTTCCGCCGCATG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3797-3097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOL010000034.1 Thermoactinomyces mirandus strain AMNI-1 contig_33_(1..58030)_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 3796 30 100.0 41 .............................. ATAACGGTTTTCTGCTTTTCCGGCTCTTTGAGTCTAAACAA 3725 30 100.0 35 .............................. GACCCTGGTTGTAACGGGATAATTTTCAATCCTAA 3660 30 100.0 35 .............................. CCTGTTTCAAATCCTGCTGATCCATTTGAAAAAAC 3595 30 100.0 37 .............................. TGATACAATGTAATCGCTCCTTTGAGTGTTTTTAGCC 3528 30 100.0 38 .............................. TAACTGGAAAAAGCGCGAAGAGTTTGCGGACAAGCAGT 3460 30 100.0 36 .............................. AAGGGGGATTCGGATGAAGGGACACATTCGTAAGCG 3394 30 100.0 36 .............................. TACAATTCATTTTCGAAAATGAATTTCTCGATATAC 3328 30 100.0 38 .............................. TCCCCCTCCTCCGCGAAAATTTTCGAAAGCGGGAAATA 3260 30 100.0 38 .............................. TTTGTCAGGTGAAGGGGATGAAGCAGAGGAACAAAAAA 3192 30 100.0 36 .............................. ACGAAAAGAGTTGATAATAATTTGTCGTCGACCTCC 3126 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ========================================= ================== 11 30 99.7 37 GTTTGGATCGTACCTATAAGGAATTGAAAC # Left flank : ATCTTACGACAAATAAAGATAAAGTTAACAATGTATTATCCAGCACCTGAAGAAGATAGAATAGGTTACTTGGATTTCAACAATTTTATCCGTATGAGTATCAATATGGACAAAAATTTATCCAAAAACATCCGGAAAGGAAAGAAGAAGTGACCCGATTGTTAAAGGAAATCAAGGAGAGTTGGGGAATATAAAAAAATTCAAGGCAACATTCCATAATTGTATTGAATTATATTAAACCTTTTAACTGAAAACCAAAGGAATAAATGGACTTGAAAAAAGGAGAGAAGAAAAATATATGGCACTGAATCAATGGCCATCAATTGTCGTCGACCTCCAGTAGAGGAGTAAACCCGGGAGATCGACGACACGGAATATTCTGATAAAACCTCCTGAAAACTGCATGTTAACTGGATTCTTTATTTTTTTGCCCAAAAGTGAGTCAGTTAAGAGGAAAAAATGGTTGTTTGTAGAATGGCTTAATAGCAACACTTTTTGGG # Right flank : CGATTTTGAATCAGCCAGGGCCATTAAAGGCGCCTGGTTTACTTTTTTTGAGGAAGGGTGAGGTTTGAGTCTGTGCAATACATTGCACAAACCTCCCCGGGCGGGTACAATCCAGCAATCCGGATTCTGGAAACTGACAAACTCTTTGCACAATGGACGATCCGCATTTCACTCTGATTCACAACTGCCAATAAGTAGCCTTTTCCAGCAATGCTGAAAAAGGGAAGATAAATAAAGGTGCTTGCTGATTCGAAGGAATATAAAATAGTTTGTTTATTTCTTTTGCATATTTTGATGTCTGATCATAAAAAATTCTCCCTGGTTTCAGACCATTGGGAGAATAAGTAAAAAATCATTGCAAATAGCAAAACTTCGCAACTTTTTACCAGGTTTTCTGTTTAGCCGTGAGGAGGATCACCCGTGGCATGGTGCCTGATAGGTTGTGTATTATAATCCGGTGAGCAATAATGCGATCTGCATAAACTCGGCTGATGCTGTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 143897-143465 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOL010000014.1 Thermoactinomyces mirandus strain AMNI-1 contig_14_(1..145296)_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 143896 30 100.0 38 .............................. AAAACGTAATTTTGGCTATGAAGGTATTTCCTGAACTT 143828 30 100.0 38 .............................. GACATAAAATGAATTTAAAGCTCTCAAAAACGATTCTA 143760 30 100.0 36 .............................. CAAACATAAAAACTTGAAAGGAGAAGTTGAGAATGG 143694 30 100.0 36 .............................. AAACAAGAAATCATCAAAATAGGGAAGACACTGGGA 143628 30 100.0 35 .............................. TTGTAACGCAGCTATATGAGGTATCTAAGAATCGG 143563 30 96.7 39 ...................A.......... ATTCCACTGGAAACGGAAACTCTTGAATCTTGCTAAACA 143494 30 76.7 0 .................A...GT...CTCA | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 96.2 37 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : GATGATGACATGATTGATGAGTTTATGGATAAAGTAAAAGAAGTATATGGATATCAAGAGGAATGGGCCGAGCGATTAAAAATATCTGCTCGAAAATTATCCAACAGGCAGTGATAAGAAAGTCAATCGATCAGAAATTTTATATCAGATTTGAAACGAATAATGAAAAGGCTTGAGGAAATACCTCTGGCCTTTTTAACATCACTTAGAAACAAATATACATATATTGTATTGGAATTAAAGCATTGGGTGGAAATACTTGAGGAAGCGAACGGACAGACTGTCTACACAAGTAACTCGGATTAAAATGGTTGAAACCAAATTTGTCGTCGACCGTGAGTAGAGGAGTAAACCCGGGAGATCGACGACACCGAATATTCTGATAAATGTTCTGGAAACTGGCTTTATTACTGGATTCTTTATTTTTTCGCTCAAAAATAAGGCAGTAAAGAGGAAAATGGGATTATTTGTAGAATGGCTTAGTAACAACACTTTTTGGG # Right flank : TGATCTTCTTTGTACTCCACTGGTGACAACTACGAATGGTTTTTTGTACGAACAAGGCAGACACAGAAAAAAAAACAACTGATTGAGCATGGAGTAAAGGTAATCTGTACTGGCAGCGGACCACGTGTCGATCTGGTAAAAGCAATGAAGCACCTGGCTGAAAACGGAATTCTATCAGTACTGCTTGAGGGAGGTGGAGGACTGAATTGGTCGATGCTTGAAGCTAAGCTTGTAGGGAAAGTGGTTTCCTTTATTGCCCCCAAATTACTCGGCGGCAAGGAAAGTATTACACTGATTTCGGGCCAGGGATTTGAGCGAATGGCTTTGGCTGTTGAACTTGAAAATATTACCGTTGAACGGTTTGGAGAGGATATTTGTATCATCGGATATCCCAAATATTGAATGATCAATAATCAAGAAAACGGGGGTGACTATAACCCCCGTTTCTCTTATCACCATACGTACCATTTGATATAGCTCCACCTAAATCTCTGAATAAT # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 59126-59751 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOL010000030.1 Thermoactinomyces mirandus strain AMNI-1 contig_29_(1..188610)_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 59126 30 100.0 37 .............................. ACAACTCGGTAATGAGCATCACGTCCATTTTTAGACC 59193 30 100.0 37 .............................. TATCCATCGGCCGGAAGAAATATTCTCTGGCCGGATA 59260 30 100.0 35 .............................. TTTATCTCCTCCCGCAAATTCCGCGATGAATTCCG 59325 30 100.0 36 .............................. TGGTATCCTCCAGGTCCGCCAAACGTGGCGCCATCG 59391 30 100.0 35 .............................. AGACATTTAGCACAATATTTGTGCCCATCTCTCGG 59456 30 100.0 36 .............................. GATGAAAGTCTTGCATTGCCGGAGCACGTCCAAAAC 59522 30 100.0 39 .............................. TCGGAAAGTGGTGATCGGGTGAGGCTCAACCTTGATATT 59591 30 100.0 35 .............................. AGCACTTGCCATTCCGCATCATACCCCAGCTCATC 59656 30 100.0 36 .............................. ATTTGGTAAAGTCTTTGATCGTATAGGGTTCAAACT 59722 30 76.7 0 ...............A.G......CTTGG. | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 97.7 36 GTTTGGATCGTACCTGTAAGGAATTGAAAC # Left flank : AGGGAGATCCGAAAGCGCTCACATTTGCCTGTGCAGTGGGCCTGGGCAGGAGAAATTCCAGCGGGTTCGGCTTGCCGCAGAGGATAACAGTTTCTGCCGGGACAAAGCGCATGCCGCGAAAATTTGTACCCGTTTTAAACTTGCATAATGGAAGACACCTTTCAGATATCGGCCTCAGCCATCTCATGCTGAAAAGAGAATTGAAGAGAGAAGTTACTCCAGGAAGACCCCATTGTTGTACAATTGAGGCAAGTATTAAAATAGGAGAGCGAACTGGAAAAGGTGGGAACCAACATACTTTATAGCCGGGTGTTGAAAACAAACTGTCGTCGACCTCCAGTAGAGAAGTAAACCCCGGGGATCGACGACACTGAATATTCTTACAAATGCTTTGAAAAAGCGCATCATTATTGGATTTTTTATTTTTTAGTTCAAAAATAAGTTAGTTAAGAGGAAAATGGAATCGTTTATAGAATGGCTTAATAGCAACACTTTTTGGG # Right flank : CGAAAAAACCGTTAGGAATTTTAAAGGAGAAGTACAGGTGCCCACATAGCGTATTGACACTTTTTTCTCTGAGAAGAGAAAATAGAGACCCAAACCGGAAAGTTTGGCTGGAGGTTTCGTTTGGATGAAAACCCCAATTCGATGGATCGTTGTCCTCCTGATCGCCGTGGGGGGATGCGGCCTTTTCGGCAGTGGAACAGGTTATGCCAACCCGGACGGCGGCAGTTTTGAAGTTCCGGACGTACAAAAAGACTTTGACCAATTTGAACAGGCACCCCAATCGCAAACAGAAACACCAAATCTGAAAGATCAAGGATGAATGGTGGAAGTAAATTGTCGTCGACCAGGAGTAGAGGAGTAAACCCCGGGGATCGACGACACGGAATATTCTGATAGTTATTTTGAAAGTTGGCATATTTACCGGATTCTTTGTTTAGGAAGCAAAAAACAGCCAAGTAAAGAGGAATTTTGGGCAAATTGTCGAATGGCTTAATAGCGGC # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATCGTACCTGTAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 60261-60891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOL010000030.1 Thermoactinomyces mirandus strain AMNI-1 contig_29_(1..188610)_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 60261 30 100.0 35 .............................. TCGTTCCGTCTTTTCTTTGAAAGTTTCCGTCGATG 60326 30 100.0 36 .............................. CTAAACAACTGATCACGTTGTTTACGGCGGTTCGAA 60392 30 100.0 39 .............................. ATTCTTGAAACCACTGGGAAGCCGCTTGGATCGCTTTGA 60461 30 100.0 37 .............................. TACCACGGAGGGATACAGGATGGGAGCTGTAGCGAAA 60528 30 100.0 36 .............................. CCCTGAATTGACATGATGATCATGTCCTGCAATTCA 60594 30 100.0 37 .............................. GCAAGATGCCAACCGCGCCATTCGATATGCTCAGTGC 60661 30 100.0 35 .............................. CGAGTTCCAAGCAAAACAGACATAGAAGCTGGCAC 60726 30 100.0 37 .............................. CAATCCCTGTTTCGTCAGGCACTCGCTACACCTCCTA 60793 30 100.0 39 .............................. ACGCAATTGTAGAGGAACCGGGACGGGAACTGTTCTATA 60862 30 90.0 0 ....A............A...........A | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 99.0 37 GTTTGGATCGTACCTATGAGGAATTGAAAC # Left flank : GTTAGGAATTTTAAAGGAGAAGTACAGGTGCCCACATAGCGTATTGACACTTTTTTCTCTGAGAAGAGAAAATAGAGACCCAAACCGGAAAGTTTGGCTGGAGGTTTCGTTTGGATGAAAACCCCAATTCGATGGATCGTTGTCCTCCTGATCGCCGTGGGGGGATGCGGCCTTTTCGGCAGTGGAACAGGTTATGCCAACCCGGACGGCGGCAGTTTTGAAGTTCCGGACGTACAAAAAGACTTTGACCAATTTGAACAGGCACCCCAATCGCAAACAGAAACACCAAATCTGAAAGATCAAGGATGAATGGTGGAAGTAAATTGTCGTCGACCAGGAGTAGAGGAGTAAACCCCGGGGATCGACGACACGGAATATTCTGATAGTTATTTTGAAAGTTGGCATATTTACCGGATTCTTTGTTTAGGAAGCAAAAAACAGCCAAGTAAAGAGGAATTTTGGGCAAATTGTCGAATGGCTTAATAGCGGCACTTTTTGGG # Right flank : ACACCGTTACCCACGCGTTGCTCTTGCATCCCAGGAGAGTTTAGATCGTGCTTATTAATAAAAAGAGAGCCGTCCTTTTGAATTTCCGCATAAAATACTTCTTCTATAGACTGAATTCCATTTTTTCTTAACTCCTCACGAACCCACGCTTCATACAAATTCAGTTCCTTTAAATTCTTCTTTACGATTTTCCCGTCTGAAATGATTTCCGAAGGAAAATAAATAAAAGGCGGGACAGGAACATTCAGGTCTTGCTTTGTAACGGTTTGTTGGGGCTCTTTTTTGAGCACCCTCAATTTTCCATTTGGTTCCAGGATGGCATAATGCACATCCTGAACACTGAATACTTGCTGCTCCCTGAGCATCATGCTTAAATCGTCAATATTCAGGCGGACGGCTTTAAGAGTTTCTTTCGAAATTTTGTCTTTTTTATGACAATTGTCGGTTGACCATCCGGCAGAATCCGGGCTTTGTTTGATTTAAGCCCAATATACCCCACA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 64355-64782 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOL010000030.1 Thermoactinomyces mirandus strain AMNI-1 contig_29_(1..188610)_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 64355 30 100.0 36 .............................. TTATAGCACTGTAATCAAAAAATATCAACAAACTGA 64421 30 100.0 36 .............................. CACCTTCTTTGTGGAGTATGACACGGGTCGGGATGA 64487 30 100.0 39 .............................. CGCTTCACTTCTATTTGAAATGCTTTCCCTTCTTGTGTT 64556 30 100.0 35 .............................. AAAGAACAAATTAAACGGTTAGGCGGTATCCTTAA 64621 30 100.0 36 .............................. TTTACGATACCGCGTACCATTCGAAATTGGCGGAAG 64687 30 96.7 36 .............................T CATCCTGTGAGTTTTCGTTGTCATGCAGATGCTTTC 64753 30 70.0 0 .......AT...T..G...A.GG...G..T | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 95.2 36 GTTTGGATCGTACCTATGAGGAATTGAAAC # Left flank : GTGGAAACCGGATCTGTTTGAATACTGCAATTGGTGTGAAATCAAACATTGCAGGAGGAATTGGCAGTGACCAAACTCTTCGTTAGCGATTCTCCACAAGAGTGATGAAAACAGAAAAGCGAAGTATTGCCCAGTCTGGTTAGCGTAAACGGAAGCTTCCAAGCGTTCCTGAGTCAATTTTGGCAATATAACTTTGTGAAAGGGACGCGAATACATAAACCGGAACGAAATGCAGCGGGGAAAGCTGGGTTCCATGAGCCTGCCGGCAAAGCAAATGATTGGCAGGCTCTTTTTACCATAAGGATTGATCCTGGAACCGCAAATTGTCGTCGACCAGGAGTAGAGGAGTAAACCCCGGGGATCGACGACACGGAATATTCTGATAGTTATTTTGGAAGTTGGCATAGTTATTGGATTCTTTGTTTTTGAGGCAAAAAACAGGCAAGTAAAGAGGAATTTTGGATAATTTATAGAATGGCTTAATAGCGGCACTTTTTGGG # Right flank : TGACCCCATCAATTCAGGAATTTGTGCATACGCAGGTCAGTGTAATATTTATATGAATTGGATGTTCTTTGTAAACCTGAATAAAAAATGAAAGTTTAATTTGAAAAATTGTAACATTACATTCAATAAATTGATTGACTCCTTAAAGTTGATCAACTATACTGAACAGGAAAATAAATCCAGTCTGAAATCACAGAAAGGATTTTGCGATGCGCTTAAATATTCATATTCGGCTTGAATCTCCATTGGTTTTGCCGCTCAATTACCAGGAAGTGCTGCAAGGTTTTATTTATAACCAGATTCCGGACAAGACGTATTCTCATTTTCTTCATGACCATGGTTATCTGTATGGGAAACGGAAGTTTAAACTGTTTACGTTCAGCCGGTTGATGGGGCAGGCAAAGGTGAATCCCAGGCGGAGAGTGATCCGCTTTGAAGAGGAATTGAACTGGCAGGTCAGTTCCTGTTTGCCGAAATTCATCCAAGAATTTGGTCAGAGT # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 74175-75477 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOL010000030.1 Thermoactinomyces mirandus strain AMNI-1 contig_29_(1..188610)_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 74175 30 100.0 37 .............................. GATCGTCGATGAGCGCATTCCATTGAGTAGTGCCGTC 74242 30 100.0 37 .............................. ATGTGCGTGAAACAGCGAGTGAAGCTTGGCTAACATT 74309 30 100.0 35 .............................. TCATCACCTGAAACGGTTTTTCTTTCTTCAATGTC 74374 30 100.0 35 .............................. CATTTCCAACGATAAACCACTTCTTTTTTTTCATC 74439 30 100.0 38 .............................. CTGTCAGAAATTGCAGTTCGTTTCGCCCCGCAATACGG 74507 30 100.0 36 .............................. AAAGTGAGACGGGCCAGGATTGAGGACAAAAACGCT 74573 30 100.0 37 .............................. TTATGTACATGTACATGTGCTTACTCGCGGAAGTATT 74640 30 100.0 35 .............................. TGGATGCTGACGAACAAGTCGGCTCCCTTGTTGTT 74705 30 100.0 40 .............................. AACAATGATGCCAACACCTATTTTGAAACATACGTACTCC 74775 30 100.0 39 .............................. AATTTTACTACAATATGAACATATGTTCTTATGTTATTC 74844 30 100.0 35 .............................. TCGGACAATAAATCGAGCGCAACGGACAGCGCAGG 74909 30 100.0 36 .............................. AAGATCCATCTTTTAAGAAAGATTTTGATGATGACG 74975 30 100.0 39 .............................. TGCCGTGCTTCGTCCCATACGCCGTTGATTCCATATTTC 75044 30 100.0 38 .............................. ACATGGAAGAAGTTGATCGAGTAATAGAACGAGCTGCC 75112 30 100.0 40 .............................. TCGCGTCCGCGTCGTAATAATACCGCTGTGACTTCGACAA 75182 30 100.0 37 .............................. TCGGATGATATGATTCTGTTTCATCCAACTCCGGCAT 75249 30 100.0 37 .............................. AGGAGAATGAAAAGATAATAGCGTATCTGTCGAAGGA 75316 30 96.7 36 ...............G.............. ATTTTGCCTCTCGGTTTTTCTTCCGGGCTTTCTGGT 75382 30 96.7 36 ...............G.............. ACGGTTGTTCACGTGCGGGCATCCCATCAACAATGA 75448 30 76.7 0 ....G..........G.A..C....C..CA | ========== ====== ====== ====== ============================== ======================================== ================== 20 30 98.5 37 GTTTAGATCGTACCTATGAGGAATTGAAAC # Left flank : GGTTGATATCCGGCTTACAATAAGGCGGGTGAAAATGGATTGTTTGTGATACTTGTGTATGATTTTGCACAAAAGCGGGTAAACAAGGCGCTGAAAATAAGCCGTAAATATTTGCACTGGGTACAGAATTCCGTATTGGAAGGTGAAATCTCCAACGCTAACTATATAAAGTTGAAAAGCGAATTGGAGATGTTGATGAATCCTGAGGAAGACTCTGTTATTTTATACACCTTTCGCTCAAACAAATATTCCAGGCGGGAGGAGATCGGATTGAAAAAGGGTGGAGACGAAAATATATTGTAGCAGGATGTTTGGAAAATGAGTTGTCGTCGACCCCCAGTAGAGGAGTAAACCCGGGGGATCGACGACACTGAATATTCTGATAAAATCTCTGAAAACCAGCTTAATAGCTGGCTTTTTCATTTTTTAGAGCAAAAATAAATCTGTAAAGAGGAAAATTGGACAATTTGTAGAATGGCTTAATAGCGATACTTTTTGGG # Right flank : AAAAAGTCATTACTGCAATAGCGTCCGCACGGGACAGATTAATGTTCAGATCATCCATATGAAAAATAACGGGGTATGGTGTAAAGAGGTTGTCAAATTTCCATAACAAGTCAAACTTGCCTGGCAGGGGAAACTCCCCTGTTTTTTTATGCATTTTTTGCCGAATCAATTGGACAATTTGTGTTGTTCCATATGATTGTAAGCGCTTTAACGGAGTGATAAATTGGAATTACGGAGGGAGCGAAAGCAGATGCTGAATCCCAGGGCCTCCAAAATATTAAACAGGCTGTATGCGGAGAGTGATTACACTTCTGTCAATGAGCTGGCCGGGTTTACGAAATCCTCTAACCGGTCGGTCCGATACAACTTGCAAAAGATCGATGAGTTTCTGGTGAAAAACGGGCTTTCCCCGTTGCAAAGGCATCACTTAAAGGGGGTCAGGCTGGATAAAGACGAGAAAACGGTGCAGTTTTTGGCCGATTATTTCAGGAAGGAAAGCC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 91144-90850 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOL010000030.1 Thermoactinomyces mirandus strain AMNI-1 contig_29_(1..188610)_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 91143 30 100.0 35 .............................. AATTGATCGATCCTTTTTCAATCCGACAATAAGTA 91078 30 100.0 35 .............................. CCTTGATAGCTTCTCGACTGCTGCTGATGGTTCTC 91013 30 100.0 36 .............................. CAGTCAAAGCAGGTGTGAATTCGTTGGTTTCAGTCC 90947 30 100.0 36 .............................. AATCCGGAGGAAATACCGCGAAATGCGCACCTTTGA 90881 30 83.3 0 A...................C.T...T..T | CC [90855] ========== ====== ====== ====== ============================== ==================================== ================== 5 30 96.7 36 GTTTTGATCGTACCTGTGAGGAATTGAAAC # Left flank : TGGAGACAATTGGTATGCATTTTTTAAAAAAGATATCCAAACGAAGATTATCTTCATTCCATATGGGACACATTTATCATACATTATAGAAGGGAAAAATTTCTATCCTATTGCATCTTCATTCACTGAGTTTATTAATAATCTAAAGGAGTTCAGAATATAATCTCAGATGTACCATTTTTTTTACTCAAAAGCAGATAACACCAATAATTACGGATTATTAGATCTCAAACAGAAATTTTATGATTGTAAGACCGGGGCTATGCTGATGGGACGAAGTATAAAAAAACAAGCAAGTTTCCACAGCCGGATGTTAGTAAGAAATTGTCGTCGACCTCCAGTAGAGGAGTAAACCCGGGGGATCGACGACACTGAATATTCCGGCAAATGGTTTGAAAAGCCGCGTCATTACTGGATTTTTTATTTTTTAGTTCAAAAATTGGTTAGTCAAGAGGAAAATAGGATCATTTGTAGAATGGCTTAATAGCAATACTTTTTGG # Right flank : GAAATAAAAGAGGATTTGAAAAAGAAAAGTACCTCCTGCTAACATACAGGCGTCCCACTGGCCAGTGAACCCTTAAATAGCAAGGAGGTACTTTTTAAGATGAAGTACGGAGCAAAATCGTAAAATTGAGGCAAATTAATTGCAGGTGCAGATATTGCAAAATACAATCATGTTGCAAGAGCAGTAGATTTACGGAGAATGGAATTAGGGAAGGCAATGTCATTTAGTCAATCTCAATCAGGATTTTTACATGAACAACAAAACTCCGCCCATAAAGACACGGAGCTTTTTACATACCTATTAAACTATGTAGAAAATATTGTGTGCCCCTTCACTCCCAAAACTTCCGGTCCAGACTGCGATACTGGATCGCTTCGGCGATATGGCTGGCCTGAATCCGGTCTTCTCCGGCGAGGTCGGCAATGGTGCGGGCCACTTTCAGGATGCGGTCATGCGCGCGGGCACTCAAGCCAAGCAGTTCGAAAGCCTGCTTCATCATC # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCGTACCTGTGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 106738-106363 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOL010000030.1 Thermoactinomyces mirandus strain AMNI-1 contig_29_(1..188610)_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 106737 30 100.0 39 .............................. ATTTTTGACATACCGGCAGGCTACGAGCTACAAGTTAGA 106668 30 100.0 44 .............................. TATCGTCATCAATAACGACATATTCGTCTGCGATTTTTTCGAAG 106594 30 100.0 38 .............................. AAAGGATTGGTCAGCGAGCGTACACGATTGGCTCAACT 106526 30 100.0 36 .............................. TGGCCGGATCACGGACGCAATCAACGGGTGCAAAGA 106460 30 100.0 36 .............................. AATCCGGAGGAAATACCGCGAAATGCGCACCTTTGA 106394 30 83.3 0 A...................C.T...T..T | CC [106368] ========== ====== ====== ====== ============================== ============================================ ================== 6 30 97.2 39 GTTTTGATCGTACCTGTGAGGAATTGAAAC # Left flank : CCACCGGGTTCAACCGTAATACAAACGAATTATAATCTACATGTTTAAAAGCCTCACCAAGTCTGTTCACTTTACCCACTCCCTGCGACAACAAAATATAGCGAAATTTAAAACAAATTTTGCGATTTATTATCCATATTCGTAAAAGATTAGAGCTTTACTTTACTTAAACCGGATTCTCATCATTGAAAAGGTGTGCCCGATCATCTGACTTTGGATAGCCTTGCAATTATCCGATGTTAAGCTATATTCTTTCAGAAACTGAATCATTGTTTGCGGTAAGTAATTTCTGATCAACTATTTTTGATTCCAGTATACCAAGAAAGTCGTCGACCTCCAGTAGAGGAGTAAACCCGGGGGATCGACGACACTGAATATTCCGGCAAATGGTTTGAAAAGCCGCGTCATTACTGGATTTTTTATTTTTTAGTTCAAAAATTGGTTAGTCAAGAGGAAAATAGGATCATTTGTAGAATGGCTTAATAGCAATACTTTTTGGG # Right flank : GAAATAAAAGAGGATTTGAAAAAGAAAAGTACCTCCTGCTAACATACAGGCGTCCCACTGGCCAGTGAACCCTTAAATAGCAAGGAGGTACTTTTTAAGATGAAGTACGGAGCAAAATCGTAAAATTGAGGCAAATTAATTGCAGGTGCAGATATTGCAAAATACAATCATATTGCAAGAGCAGTAGATTTACGGGCAATAAATTAGGGAAGGCAATTACATTTAGTCAATCTCAATCAGGATTTTTACATGAACAACAAAACTCCGCTCATAAAGACACGGAGCTTTTTACATACCTATTAAACTATGTAGAAAATATTGTGTGTCCCCCTATTCCCAAAACTTCCGGTCCAGACTGCGATACTGGATCGCTTCGGCGATATGGCCGGCCTGAATCCGGTCTTCCCCGGCGAGGTCGGCAATGGTGCGGGCCACCTTTAGAATGCGGTCATGGGCACGGGCGCTCAAGCCAAGCAGTTCGAAAGCCTGCTTCATCATCT # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCGTACCTGTGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 56537-55511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOL010000009.1 Thermoactinomyces mirandus strain AMNI-1 contig_9_(1..235103)_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 56536 30 100.0 37 .............................. TCCGTTTGGAAAGATCTAGGACCACATCTTTTTCTTT 56469 30 100.0 36 .............................. CCTCGAGCCATAGTTCAAAATCTCCTCCAGTAGTTC 56403 30 100.0 36 .............................. CCCCCAAAAGTGCAATAAGAGTGCTAAATTACTACC 56337 30 100.0 36 .............................. TAGCAAAATTTCGACCAGGGAAATGGATCTCCCTGG 56271 30 100.0 37 .............................. ACACACCAGAAAAGGGATAATGGCTGGTTGCAGCGCG 56204 30 100.0 37 .............................. CAGTACGTATGTAGACGCACTCCCGAAGCTAGTCAAA 56137 30 100.0 37 .............................. CGTCTGAGGACTTCCTAAAGTATTCGGGAGCTATGGC 56070 30 100.0 35 .............................. TATCCAGTGAGGGAGTGGTTCACCGTCAAAGAAGT 56005 30 100.0 36 .............................. AGAACAAACCTGTCCAGGACATTTTTCTTCAAATCA 55939 30 100.0 36 .............................. TGATGATCGGAGAGCATATGAAGTCGTTAAAGCTAA 55873 30 100.0 38 .............................. TTGTCCCTGCAACGCGGCGATTAATTCGTTTAGCTTAG 55805 30 100.0 37 .............................. CCCTCTCTTCTTGCTCAAGCAATTTTGCGATATTCGG 55738 30 100.0 36 .............................. ATTCCAAAAACGAGCGACTCCGCGACAACTTGGTCG 55672 30 100.0 36 .............................. TTCCGCCCAGCCACGGAGCCGATACCTTTTAAAGCC 55606 30 100.0 36 .............................. GGATCACGCCCCGGCTTCGAAGGGTCGCCAGGGATT 55540 30 93.3 0 ................C...........G. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 99.6 36 GTTTGGATCGTACCTATAAGGAATTGAAAC # Left flank : AGATGAGAACGGGAAAATGAATCATTCCCTGCTCGATGTCGGTGGCGGCATCCTGTCCGTCTCCCAGTTCACCCTGTACGGGGATTGCCGCAAAGGAAGGCGCCCCAACTTCATGCGTTCCGCCAAACCCGAACTGGCCGAACCGTTATACCATCGTTTCAACGAGATCCTGAAAAGCTATGATGTCCCTGTGGAAACAGGCATTTTCGGCGCCATGATGCAGGTATCCTTTACCAACGACGGTCCCGTAACCCTGATTCTGGAAAGCAGGGAATAAAAGTATAAAGAGACAGAATGAAATAGATTATTTATGTTTGTCAAATATGTCGTCGACCCCCAGTAGAGGAGTAAACCCGGGGGATCGACGACACTGAATATTCTGATAAATATTTTGGAAGTTAGCATAGTTACTGGATTCTTTGTTTTTGAGGTAAAAAACAGGCAAGTAAAGAGGAAATTCGGATAATTTATAGAATGGCTTAATAGCACCACTTTTTGGG # Right flank : TTGTCGATTTTAATGGACTCGCAGGGCAACCACCATCCCGGTGTAAAATAACATCGTAAGCATGCCCAAGTTCCCCGGCTTGATGGATCGAGCGAACCTGCTCCTCTTGTCAAGGCCCTTTCTGAAACAGAAACTTGTACTGTTCCTGTGAGCCGGTTTTGAACTTTAGCAGTTGTTAGTAGCGGGATTCCTGCTTCAATGGTTCACCGTCAGTTCTGCACAAACTGAATATTCAAAATTAATGTTGCAATAAAATTAAGAAAAATGTTAAAATAATGGCGTAACCAAATCGAGGAAAAGGAGACGCATTGTGTAAATCGGTAAAAATCCAAACATTTTCGGGAGGGAGAATTGGACATGATGGGAAAGGGTAAGGCTTCGCTTTTTCTTGCCTTTGCTTTTGCGTTTTCGCTTGTTTTTGGTACCGTTCCTGTTACGGGCGCTAAAACCGTTGTTCAGGTGAACCATGCAGATTTGGGTAAGGTTCCCTATCAGATTGT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 12976-13374 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOL010000016.1 Thermoactinomyces mirandus strain AMNI-1 contig_16_(1..38972)_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 12976 37 100.0 35 ..................................... AAAAAGGAATCATAAAAAGAATAAAGTATTGACTC 13048 37 100.0 35 ..................................... AGATAAGGTTTGGATTCCCCGCATTATCTAATAGC 13120 37 100.0 36 ..................................... CGGATCGACGCCCACCAATTCAGGAATGCAACCGGG 13193 37 100.0 37 ..................................... AATACTACCGATCGCTTGAACCGACTCAGGTCAGCCC 13267 37 83.8 34 G...T...GG.C.........C............... AGCCGCAAAGTATTGTTCTTGGTTCTTCCCAATA 13338 37 86.5 0 G...T...GG...........C............... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 95.0 36 ATCTCAATAAATACACCTCATTAAAGAGGATTGAAAC # Left flank : GACATCGGATTTACAATTCCAGAAAAACATTTAGTACAAACTCCACCAGGTTTGATTGATGGAGATAAAATTGTCAATTGAAATTGAATTATAGGTAATAGAGGAGGGGAATCAGGAAAAGGACGACTCATTGGCTTTTTTCTAATAATTTATCGCAAGGATTTTTATTAAGCCAATTTTGCTGACCAATTTAATAAAGGGAAAAAGAACAATTATTATATCCTGGTTATATAAACTGAAGGACTTTGCTGTGAAAACGTGTTGTCTATTATGATATAATCGGCTTATCAAAGAGGCAGTTATTATCCTTTTCCGAACACCAGGTGCTTCGAAAAAATCCCGGGGGTTGTTCGGAAACATCAAAACCCGCATGAAATAAGGAAAAACTGAGTTTCCAACTGGCAAATGACAAGGAAAATGACTCGAAAATTTTGCTCAAAAAGGAGGTGTTCGGAAATTGAAGTAGAAGACCAGTCATAACAACGGCTACAGCGAACGCT # Right flank : CATTTGATAAATGCCGTATGCTGACAACCCGCCCCGTCTCAATAGATACACCCTATCGGTTTATGGTAAAAAACTGGCTGATAGTATTATTCCCTCATGGCTGATTCTGTTAAAAAGTCCATTTGGTAAACTGGACTTAAGAAATAACCGGAGGGGATTTATTATGGCTAAAAAAGGACAGAAGAGTCCGCAGTTACACACCTGAATGGAAGATAGAGGACTAAGTTATGAAGCAGTAGCGACAAAATGGTTATTCCCTCCAATAAACTTGTGAAGCAGTGGGTGAGGGATGAGAGTTTTTGAAAGATAATCGCGGGATGGAGTTCAAAAGAAAAAGGCCTGAGGTTTTTCCTCCGGCCAGATCTATACGAACATTTTATTTTCGAAGTTTTAGCTGAGAAATTAATGATGCAATATTATCAGCTAGCATATCAAATGATTTTCGTTCAAAGTCCTCTAATTGCACTGTCCCATATTGGTTGTCTACAACTACAATTAAT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTCAATAAATACACCTCATTAAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 16445-16920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOL010000016.1 Thermoactinomyces mirandus strain AMNI-1 contig_16_(1..38972)_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 16445 37 100.0 34 ..................................... TCCATGACATATTCCAACACAAACCGACAACGAA 16516 37 100.0 35 ..................................... TTCACAAAAATAATTGGATACGCTTCATAATCGCC 16588 37 100.0 40 ..................................... ATCGGCTCCCTGCCAATGCCCGACGATCCGATCGGAATCT 16665 37 100.0 36 ..................................... CCGTCCCCATTTTCTCTTCAAGTTTGTCCAGTCGCC 16738 37 100.0 35 ..................................... GGCAACCAATATATTGAGAGGGGTTTTTTGATGAC 16810 37 91.9 37 G........G..........A................ TATCGTTGTTCTTGGAATGGTGACGGATCAATGAAGT 16884 37 70.3 0 G........G......T....C........AACGGTT | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 94.6 36 ATCTCAATAAATACACCTCATTAAAGAGGATTGAAAC # Left flank : ATAAAATAACATAAAAAATTATATCTTAACAATAAATAAATTCTACATATTGGTGAAAAAAGTAGTGGTGTTGTTCCATTGTCAATTGAAATTGAAAAAGAGGCAATAGAGGAGGGGAGCCGGAGAAGGACGATTCATTGTTTTTTTAAATAATTTAGCCCAAGCCTTTTATTAAGCCAATTTTGCTGGCCGAAATAATGAAGGGAAACGAAAAATATATTCTGGTTAAATAAACGGAAGGATATTGTAGTGAAAACATGTTGTCTATCTATGATATAATTGCTTATCAAAGAGGCAGTTATTACCCTTTTCCGAACACCTGGTGCTTCGAAAAAAAGCCGGGGGTTGTTCGGAAACGTCAAAACCCGTATGAAACAAGGAAAAACTGAGTTTCCAACTGGTAAATGGCAAGGGAAATGACTCGAAAATTTTGCTTAAAAAAGGAGGTGTTCGGAAATTGAAGTAGAAGACCAGTCATAACAACGGCTACAGCGAACGCT # Right flank : TGCTTGTGCTTTTTCTAATTGATTGATGCGCTTAGCCAGATGGTTCTGCTGTGCTGACTTTCCTCTCAGTCTTATATACAGATGTGTCGTGAGCAGGCTCTCTCAACGCCAACGATCCACCCGCTGATTTTTCTTTTCGATTAGCTCATTATCTTTTTCCTTAATTTGTGTCTGGATCGAAATTAATGAATGAAACTTGTTGTTCACAGGATACTTTTCTTTGCAGGAAAGGACTGGCAGAACGACGACAAAATGCAGAAACCACTTTATCAGCTAAAGCATAAAAAACCGACTGTGCCAAATGTAGCAGGGGGATAACACAGTTTGCCAAGCATCCAAATATCGAATCCAATGACTTTTCAAGTATAAAGTTAAATTGCCGGATGAACCTGGCTTTGCAGTGGACATACTCTTGCCGTCAAAGAGTATGTCCACTCTTTTTTACTCAACGTATTGCCAGACTCCATCGACACAATTCAGATCTAAAACAGTGTCAGAAG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:0, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTCAATAAATACACCTCATTAAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 19981-20675 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOL010000016.1 Thermoactinomyces mirandus strain AMNI-1 contig_16_(1..38972)_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 19981 37 100.0 36 ..................................... AAACTGCTCGCCTTGATCTTCCACCATGACACCTTC 20054 37 100.0 35 ..................................... GATACAGTTAATAAATACGGAACTCTCCACGGTGT 20126 37 100.0 39 ..................................... AAAGGTCGATATTTTTCCTGATCGTTTTGTGAAGCCGAG 20202 37 100.0 38 ..................................... TTATTGTCCCTGCTTCCTCTCCTTAACCTATCCTTATA 20277 37 100.0 34 ..................................... GTATGGGATGAAACCGTCTATATCCTTTGTTGCA 20348 37 100.0 36 ..................................... AAGAAAAACGGATATCATCAAGAACCACAAATTGTC 20421 37 89.2 36 .......C...T.........TG.............. GCCAATTTTTCAACCTCAGCAAACAACTCTTCCATG 20494 37 89.2 36 .......C...T.........TG.............. AAGCCGATGGCGGTTCATATTCCTTCGCGAACCAGG 20567 37 89.2 35 .......C...T.........TG.............. ATAAACGGAATAGACGGCGGTTCCCCGGCAAAATG 20639 37 81.1 0 .......C...T.........TG.......A...T.G | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 94.9 36 GTCTCAATAGAAACACCTCATCTAAGAGGATTGAAAC # Left flank : GTAGAAGATTTGAACAGAAACGTTACCTTCCAACCTGCTAAACGTCATGCTGCTGGTGATCCTCCTCACACCTAAGTTGAAAATTCAGGGTGAAGGTAAAAGAGAGATGAACAGGAACGTTATCTTCCAATCTATCCAGTGTCATGCCGCTGGTGATCTTTCTCACTGCTAAACGAAACCCGATAAAAAAGTTACTCCGTTTTGCCCATTCCCATGATTTTTTTACGTATTCTCCCAATGGTCATAAACCAGGGAGAATTTTTTCTGTTATGATATAATCGGCTTATCAAAGAGGCAGTTATTATCCTTTTCCGAACACCAGGAGCTTCGAAAAAAAGCCGGGGGTTGTTCGGAAACACCAAAACCCGCATGAAATAAGGAAAAACTGAGTTTCCAACTGGCAAACGGAAAGGAAAATAACTCGAAAATTTTGCTTAAAAAAGGAGGTGTTCGGAAATTGATGTAGAAGCCCAGTAATAACAACGGTTACAGCGAACGCT # Right flank : GTTTGTTTTATTGATTGATGTACTTGGAGCTTGTCTGCCATGCTGATTTTCCTATCAGTTTTTTGTATTCCAGATGTGTCGTGAGTTGGTTTTCATTTTTTGCCTCTCCCAATGCCAACGATCACCTGCTGACTTTTCTTTTCGATTTGTTCTTTATCTTTTTCCTGATTTGTGTCTAGACCAAAAGCAATGAATGAAACTTGTTGTTCGCACTTTTCTTTGAAAAAGAACTGGCATTTTGCCACCCTCTATCTTCTTTACATTCTTTTTCATTAGCTAGTATTTGGCTTCAACAACATACTTATAAATTCGTGGCATTACCCAAACTTGTTTGATTAAAAGTAGTGTCTGGAGAAAGGTGAAAAATGATGACTTGCCAGCGGGACACATTCAGATCAGTATACGGTATATTGGTTCTGATGTTATCTCCCTAACAACTTTTTATGTGTATTCATGTTTTTTATTCGGCTATTTATTTATCAATATAAAAATACAATAAC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATAGAAACACCTCATCTAAGAGGATTGAAAC # Alternate repeat : GTCTCAACAGATACACCTCATTGAAGAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 4 26180-26506 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOL010000016.1 Thermoactinomyces mirandus strain AMNI-1 contig_16_(1..38972)_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 26180 38 100.0 34 ...................................... TGCAATATCCGAGTTTGATATATGAGTTTGCAGA 26252 38 100.0 34 ...................................... TTATGCGTTTAGGGAGAAAGCAACCGGCCGCTTT 26324 38 97.4 35 G..................................... CCGAAACAATATGTTTCCCCGGTCCCGCACCGGGA 26397 38 100.0 34 ...................................... GACATCGGACGGGGATATAGCAAAGCCAAAAGCC 26469 37 86.8 0 .....C...-..A..........C........C..... | A [26481] ========== ====== ====== ====== ====================================== =================================== ================== 5 38 96.8 34 AGTCTAAATCAGTACACCTCATCTAAGAGGATTGAAAC # Left flank : TTCAATTCCTTATAGGTACGATCAAACCCCAAAAAGTCTTTTTATTAAGCCATTCTACAAACAACCCTATTTTCCTCTTAACGAACTCACTTTTGGGCAAAAAAATAAAAAATCCAGTAATGATGCGGTTTTTGGGAATTTTTATCAGAATATTTGGTGTCGTCGATCCCCCGGGTTTCCTCCTCTACTGGCGACAAATTATAACCTCAATTTATCTGAGGCATATTTTCGTTAGGGGATGACTTTGCTGTGAAATTGTGTTGTCTATTTATGATATAATCGGCTTATCAAAGAGGCAGTTATTACCCTTTTCCGAACACCAGGTGCTTCGAAAAAAAGCCGGGGGTTGTTCGGAAACGCCAAAACCCTTATGAAACAAGGAAAAACTGAGCTTCCAACTGGCAAACGGCAAGGAAAATAACTCGAAATTTTGCCCCAAAAAAGGAGGTGTTCGGAAATTGACGTAGAAGACCAGTAATAACAACGGCTACAGCGGACGC # Right flank : CTACTGTAGTTAAAGTCTTGCTTTGGTTGACTGTTTCGGGAATAGTCCCTTGTGAATGTATCGGGCAAGGGGCTTTTTTGTTTTTGCAAATAGGACTACGTTAAGTGCGGGACTTTTTCATGATGAGGGATACAGAGGCGTCTGCCTGAAGTTTTCCGGAACGTTATGCCAAATTGAGGTTGGACGCATTATCCAGACTGCCTTAAACTGATAATGATCCCGAGTGCCTTTTATTACACTCCCTGGGGTAACGGGACAAGAACGATTCCAATATTTCTGAGAGGGAAGACACGATGTCAAAAGTTCATCGGATTCATGCCAATTACCGCGACAGGCTGATTGAAATCATTGCCGAGTTGTTACGCGATCCCGGTCCCCACTCAATCAGGGACAAGGCCGAAAGATACGGTATTTCTCAGGAGAAGCTCCGCAAGGATCTCAATTATCTGATCAGCAAGCTTAATGATATGAACCAGAGAGAGTATATCATCCGAAGACGG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCTAAATCAGTACACCTCATCTAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 5 37511-37775 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOL010000016.1 Thermoactinomyces mirandus strain AMNI-1 contig_16_(1..38972)_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 37511 37 100.0 39 ..................................... GGTAGATGAGGCGACAGAAGAAATGGAATGGCGATATAA 37587 37 100.0 35 ..................................... TTCTGTTTTTTGCGCGCCATCACGTCACCTCCTTG 37659 37 100.0 39 ..................................... TTCGGCTACATCCAAGCAGGGAAAAACCTTCACCGCTGA 37735 36 86.5 0 .......T.............A.-.....T.....T. | C,TGT,C [37756,37765,37770] ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 96.6 38 GTCTCAACAGATACACCTCATTGAAGAGGATTGAAAC # Left flank : TTTCCAGTGCCAGCAAGGCATATAAACTTTGTACCGGAAAGAAAGTGAATTGGGATGAACTTGAACCGCTGATCCGAAAGATCCGGATTGAGCAGTTAACACTGGCCACTGAGCGGGTTTCCTTTGGGAACTTCAATCTTGTAGGATTCAAGGGCAAAATGGCCATGAGCACCAAAGCCTTGCCAACAGAGGAGCAGCATCTGGTCTGGCAGCTGGTGGCATATGGCGCGCTGATGGGATTTGGTTACAAAACCGCTTGGGGGCTTGGCCAAACTCTGCTTGATCCGTTGGAAAAATATACGGGAAATTTTCCGAACACCAGGAGCTTCGAAAAAACCCCGGGGGTTGTTCGGAAACGCCAAAACCCGTATGGAACAAGGAAAAACTGAACTTCCAACTGGCAAATGACAAGGAAAATGACTCAAAAATTTGGCCCAAAAAAGGAGGTGTTCGGAAAATGACGTAGAAGACCAGTAATAACAACGGTTACAGCGAACGCT # Right flank : CGAAAGCAATGAATGAAACTTGTTGTTCACAGGACACTTTTCTTTGCAGGAAGGACTGGCAAAACGCCAGTCCTCAATATCTTTTGTATCTTCTTTTTATCGGTTAGTATTTGGCTTCAACAGTATTTTGGAATCCCGCTTACAAATCCGCTGGCATTACCCAAACTTGAAAAGTGGAGCTCGGAGAAAGAAGAAGCATCCAGACTTGCCAGCGGGATACATTCAGATCACTCTGTTGGTCCTGATATCAGATCTCAAAAACGAAAAAGAGCGCTTGACAGCGGTATGTCCCAATTCCGCCTGATGCTATGAAAAAGTTCTTTTCACCAAACTGAAGGACTCTGTGGTTAGTAGGAATATAATAAAAAGCTCTTAGTTGCCGTCTATCCTATAAAAGTCTGTGAACCTCCCGGGATTTTTGCTTGACCAGCGGTTTACAGACTTTTTATGATTTTGCTATACTGAAAACTATTGATTTTACTGGTGTTCACACACGGGGG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:0, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAACAGATACACCTCATTGAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //