Array 1 4534-4713 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHH01000147.1 Leptospira noguchii str. Bonito ctg7180000009049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 4534 37 100.0 36 ..................................... TTTTAACCTTATCGAAACGCTTATCCAAACTCCTAA 4607 37 100.0 33 ..................................... TTTGGACAACCGGCCTAACTGGATTTGATCTGT 4677 37 97.3 0 ...................................T. | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 99.1 35 ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Left flank : ATAAGCCATAAATTCTGAAATACATAATCGATTAGAGCTTCTATATTTTTACAATATTCCATCATTTACTTATAATAAGGTCCTGCAAATTTTAGAAACAAATCGCCAAAATTCTGAACGCTCTGATTCTATGGTTTCTGAGTTAATCAAGTCTTCAAGTCCAGCGTCTGGCAATCATCTCAACAAGAATGAAAAGATACTTGAATGGAATTTAAGTTAAATTTCAAAATTAATCTTTTTAGTAACACAAACTTAACAATTCGAAATTCAATTTTCTTGACTTTAAACAGTTGATCATTTTATGATAAAACGCTTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGGCTCCATTAGGTTCGCGATAATTATGTCTAGAAAAGTTAATAAAGCTTTTTCTAATACATCGATTAGGGCCTTTATAGCCGCT # Right flank : CATTTAAAACATCTTCGAAAAACGTTAAACACGACTTAGTCGCCCCTGAAAAAGTGTTCAAATGACGAATAACGCAAATAAAACGTTATCCAGATGGATCTAATCAAAAACAAAATCACCGTAAAGAATCCAGAAGCCACGTAAAAGGCGGTAAAAATGAAACCAGAAGAAAGCTCAAAACAAAAAAATCAAGGTGAACTATTTCGCAACAGATTAGACCAAGATCATAGACACCCGTTGTATCAAATTGCGAAGAAGATAGACTCGGAAAAGTTTGAGAAAGAATTCGGAAAGTATTACACAGAGAAGATGGGAAGACCGGGCTTACAAATATGATTGTTAGTTGGACTTCACTACTTAGAAAACGCGTATAACGTGTCTGATGAGAAGGTTATTTAGAAAATCAGTATTGGCAACATTTCAAGTGACTAGGTTTTAGTCTTAGATGTTAGTTATATTTTCGTAATAGAGCGATTTCGGTTTAAACAAAGTAAAATCTC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 832-1802 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHH01000172.1 Leptospira noguchii str. Bonito ctg7180000009045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 832 37 100.0 35 ..................................... TTTATTTTCTGTAGTTCCTTTTTGCAAAGATTCTA 904 37 100.0 34 ..................................... CTCACTTGATTGAGACTCTCTTGCTTGGATAGCC 975 37 100.0 35 ..................................... AAGGTCGATCATTTTCGCTACAAGGTATTGTCGAT 1047 37 100.0 34 ..................................... ATTGACAGAAGGTCAGGACTTTATAGATGCTCAA 1118 37 100.0 35 ..................................... TCTGAGTTTTTGTGATTTGCGAATTATTGGATACA 1190 37 100.0 34 ..................................... GTCTCTATAAACTCGGTCCCAAAATGTGGGCACT 1261 37 100.0 35 ..................................... CCCCGGAATGGAATCGATCATAATCCTAGCCGAAA 1333 37 100.0 37 ..................................... GCTAATGATTCTAAACATCTCCGACCAGAGACCGGAG 1407 37 100.0 35 ..................................... ATTCCCCTGCAAGTGTTAGTTGAAAAGCGTCTCTA 1479 37 91.9 34 A................TG.................. CGGTTGGGAGTGTGTCGTCGGACACGTTGGCGCA 1550 37 100.0 36 ..................................... TGAATTCGCATGTTTTGAAAACGATCGACGGAGTAA 1623 37 100.0 35 ..................................... TGAGAGGTATAAACTTTGTTTCGAAAAATATCTTC 1695 35 86.5 36 .......A...A....A....--.............. ATCACAAATGTAAACTCAGATTTACATTTGACTAAA 1766 37 70.3 0 ...........G......G.T.AGTT.C.T..A...T | ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 96.3 35 GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Left flank : GTTTGATTTGTTGTTCTTTCACTAAATCCTTCGTATTGCTCGTTAAACTCGCGATTTGAATCGTTTCTTTGTGGACATCCATTCCTACATATACTTTTCTTTTCATTGCGTTCCTTCTGTTGGTTTTCTTGTTTTGTGGTAAATGCAATTCTTGCATCTAACCCACGCTTTTCAAGCCCAGAAGGGGCGCCATTTTGTCTAAACTTTTAAATCAATCCTCTGAAAATTCATCCCTAGACATCCAGTTACTTAGCAGTAGTTTATAGTTTTATATTCTTGACTTTAAAAAGCGGACCATTTTATGATAAAGCGCTTTTTGCGAACCTGTTTCTCCCGATTCATTGTGGCCCATTCGCGCTCAAGCGAATAACCGCCGTTTGTCGATTGAACAGTTTTGCTTAACGTTTATACAGTATGTCGTCAATAGGTTCGCGATAATTATGTCTAGAAAAGCTAATAAAGCTTTCCCTAATACATCAATTAGGGCCTGTGCCGCCGCT # Right flank : TTTTCAGAATTTATCTGTAAAAATCATGGCTTACTTTAATCCTCTGTATTCAAAAGCTGGAAAGAATACTTTAGAAAATCAATATATAATTGATTACAAACCATTTTTAAAAATACTAATATAATCTACATTTTAAGTAAAGATAGAGTATTTTCGAGATAACTTTTACCGATCCCTACAAAATCAAGTACCTAAAGTTATGATAAAGTGTCGGTTAACGTGTTTTCGGGATAATCCAATGCAAAAGCGATTGAGGCGGGATCAACAAATTGAATTCAGGATTAAATTTTGTTTTCGAGCAAACCCTCAATTTGTTGATCGGAGCTGAAAGCGCGGTCCGGCAGAGCCGGATTCGCCCGGTTTTCTTTCTCTGAATTTCACACTATTGAAGTGTAAAAGATTGAGTATTTTATTATATAGTTATAGAGTAGTATTTCTATAAATTCTGTAGACTACAGAATTTATATTGATTTTGAGAATTTAGAAAAAGCGAACGACGA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 30211-31032 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHH01000189.1 Leptospira noguchii str. Bonito ctg7180000008872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30211 29 100.0 32 ............................. GGTTGATCCTCTATGATTATAAGCTTTTCTGG 30272 29 100.0 32 ............................. TCTGATAGCCTATCCCAATATTATCCGCTTGA 30333 29 100.0 32 ............................. ATAAATACATAGATGCCCCAAAGCTGAAACTA 30394 29 100.0 32 ............................. CGCGCAAACGAGCACGAGACTCTTTTACGTTT 30455 29 100.0 32 ............................. AATGCAAAAAAAACGAATTCAAAGATAATAAG 30516 29 100.0 32 ............................. AAAAACATTCCAGTTACCGGCACGCCTCCCAC 30577 29 100.0 32 ............................. AGCGTCATTTTGGTTACGGATGTATGCACTTT 30638 29 100.0 32 ............................. ATATGGGCAACCGCGAGAGAAAAAGGGATTAG 30699 29 100.0 32 ............................. CAAGCGGCATTCGTCAGTCAACAATCTCCAAT 30760 29 100.0 32 ............................. AGACGTATTATAAACTGATAGATACGGAATTC 30821 29 100.0 32 ............................. TTAATCGATGAGATACGAATAGAACAAGATAA 30882 29 100.0 32 ............................. TTAATCGATGAGATACGAATAGAACAAGATAA 30943 29 100.0 32 ............................. TTAGGTTATTCTGTGTTAGAAATTAGAAACCC 31004 29 93.1 0 .........................TT.. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 CTATTCCCCACAGGCGTGGGGTTGAACCG # Left flank : CAAAGTAAATTGTTAAAACGCATTATTCCCGATATGAAGGAGTTAATCTATGGTGGTACTGATCCTGGAGAGGGTGAAGACTTCACAGAGGGGCGAGATGTCGCGGTTAGCCATTGAGTTAAAACCGGGCGTTTTTGTTGCAACCGTTGGCGCAAGAGTTCGTGATCAAATCTGGAAAAAGATTTGTGAAGAATGGAAATCGGACGCTCTCATGCTATATTCGAGCAACACCGAACAAGGTTATATCATTCGTTCGAATGGAGATCCATCCAGAGAGATTGTCGAGTTTGACGGTATTCAATTGATTGCCAAGCCCGATCCGAAAAGTGACCATATACAAATTACCGATGAGATTGACGAATCAAATACCGAAATCAATTCTCCATTTCCAAATATAGAAGAATTTTTTGTAGAGAAGGCAGACTCTCTTCGCGCAGAACTGGATCAAAATCTAAATAATCCGTAGACATAATATCAGATCTACTATACAAATCCTTAGA # Right flank : GAGGATTTCGTATCTCACTGACCTCTGACATTCCTCAAAAAAGCTTGGCCTTTACTCTGCTGATTCGGCAAAACGCTGATTGCTTGTCTTTCCTTTACAACATATATACTACGATAGAGAGTTTATCCTATTTGAAATCTTCATTTAGATTTCTTCCTGGCGTTGTTGAATATTAGCAAGGCCAGAACTGTCCTCAAGGCTTTCGTAATAGGGTAGCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTGCGGATGGTTCGTCATCCCGGTCCGGAAAGGGGGCGTTTCCCAGCCCTTACCGGGCTGGGCCGGGCTCTCCGCTCCGGTCCTTCGGACCCCGCTCGATCCCTAACGCGACGATCCATAGAGAGTCGTGTTACTGAGTTCAGAGAGCAAAGCGAACGAACGCGACGATCCATAGAGAGTCGTGTTGCTGAGTTCAGAGAGCAAAGCGAACGAACGCGACGACAGCGGATCTCCTTCTTGAGATTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACAGGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 823-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHH01000020.1 Leptospira noguchii str. Bonito ctg7180000008842, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 822 37 97.3 34 .............G....................... TCTTTTCCTTCTGCTTTCAAATCAGAATAGTATT 751 37 97.3 34 .............G....................... TTCTAATCCATCTACTAAAATCGACGGTGTTGTA 680 37 97.3 35 .............G....................... CACTTTGGGATAGTATGTAATTTGTCTATTTCGAC 608 37 100.0 33 ..................................... CTTGCCAAACTGATACTGAGTGACGGCCGCAAG 538 37 100.0 34 ..................................... AAATCGAATCACAAAGAGAAGTTCACGGCGAAGA 467 37 100.0 35 ..................................... TCTCAAGGTATTCATGCCGCCCCCTTGGCGGCAAG 395 37 100.0 34 ..................................... ATACATTCGTTTGGATTCGTAAACCCATTTGCTA 324 37 100.0 34 ..................................... ACATCTCTGTTTGTTGTGGATAGTATCTGTAAGA 253 37 100.0 34 ..................................... GGAAGAGCGGATGAGGTAGCATAACCAAATTAAA 182 37 100.0 34 ..................................... TGACTTCGCCGGTTTGGTGAAAATGCTCCGAAGA 111 37 97.3 35 .............G....................... AAAAGTTGCGAGTTTCTATAATCTCGATACGCATC 39 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 12 37 99.1 34 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTACCACATTCCAAAGATAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATTGAGTCCTTTTTTTTAAATCGTATATAGTTAGTTGCCATACAAAATACCTAAACGTATAATAAGAGTTTTATAAAAATGCCATATTTGTGATCAATATAATTTTAAAATAAAACAATCGGTAAAGAACATATTTAGTTGAACAACATTTTTTGTTTATTTTTATAGAAAACCCTCCCCATTGCAAAAATGAAGCGGTTTTTTGGTTTCCAATATTCTTGACTTTTAAGAGGCGATCATTTTATGTTATAGCACTTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGTCACGTTTAGGTTCGCAATTATTATGTCTATAAAAGCTAATAAAGCTTTTTCTAATGTATAAATTAGTATCTTTGTGGCCGC # Right flank : CTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTTCTCTTGTTAAAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 879-1489 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHH01000232.1 Leptospira noguchii str. Bonito ctg7180000009041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 879 37 100.0 34 ..................................... TGAATCAATCACCGCAATTTTTTTTCCCATACCC 950 37 100.0 38 ..................................... CCTTCCAGAATATTCGTATTTTGTGAAGTATTTGGAGT 1025 37 100.0 35 ..................................... AGTGATGTTGAATTCTTTATTTGCATAAGCAACAG 1097 37 100.0 34 ..................................... TGTTAAGCGACATTTCATCCGCTTGGAAAATTTC 1168 37 100.0 36 ..................................... GGTGTACACGTTAATGTAACCGACTTCCAGACGCCC 1241 36 97.3 34 .......................-............. AAACCTTAAAAGGTCGTTTATCAGACTTTTCTCA 1311 36 83.8 34 ....-AA......CT.......A.............. ATACAGCATAGCTGATATTCTTTTGCATAAGTTT G [1332] 1382 37 100.0 34 ..................................... GCCCTGACATGAGAGCTGCTGCTGAATGGGAAAC 1453 36 86.5 0 ......................-.........T.CGT | C [1484] ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 96.4 35 GTTTCTTCTTCTTACTTTAGAAGGAGTGGATTGAAAC # Left flank : TCGCGATTTGGATCGTTTCTTTGTGGACATCCATTCCTACATATACTTTTCTTTTCATTGCGTTCCTTCTGTTGGTTTTCTTGTTTTGTGGTAAATGCAATTCTTGCATCTAACCCACGCTTTTCAAGCCCAGAAGGGGCGCCATTTTGTCTACATTTTTTATATAAAATTTAGTTTTCTATTAAACGTCTAGTTCGGTTATAAGATCATTCAAAATCTCTAAATTCATACAATTTTAAAAAAATTTTATATACCTTTCAAATCCTGCTATAAGTTTTCCTTTGAATAGCCGATCCTTTACATTGAAATGCTTTTTTGCGAACCTGTTTCTCCCGATTCTTTGCAGACCTTTCGCGCTCTTGTATTGATTCGTTGTTTGGCGATTTGACAGTTTCGCTTAGCATTTGTTCAGCATGGTAAAAATAGGTTCGCAATTATTATGTCTAGAAAGCCTAATAAAGCTTTTTATAATACATAATTTTCAACCCTATTAAGCCGCT # Right flank : TGCAACCGGTTGTCGGGTTCCACGTAAGTCAGGTTCCTTCTTCTTGTTAGAGGAAGCAGACTAAAACTGAACGCGGATTTATATAACGTGAGTTCAGTGCAAAGAATTCATTTTTTTGAAAAAAGCTGTTGGTCTTAAACTTTCTGAATCAATTTCTAAAATGTGGGAACTCATACTGTTTAAAAATTTGTAATGTGACTTAATCTGTGGGAACTACTGCAAACCACGATTTTAAGAAAAAATTCTAAAATTGTAGGAACTCATACTTTTAGAAAATTTTTCTCAATCAGAACTCACGTTAAAATGAGATTTAAATTTTGATGATGCCGCAAAACAGCGATTTTATGTAAAAATCGGATGGGCGATGGGCTCTTTTTGTAATAGTTCCCACAATTTTCAGAGTTTAACTGGTAAATCCATAATTTGCAGTAGTTCCCACAGATTAATTCGTATAAAAGAGTTGTTGAAAAATTTCATAATGGAAATGGAGATTAGGAATA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCTTCTTACTTTAGAAGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 1298-763 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHH01000278.1 Leptospira noguchii str. Bonito ctg7180000008946, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1297 37 100.0 33 ..................................... AAGGAGTGATGGGAGCAGAGGTGGGAAAAAGCA 1227 37 100.0 35 ..................................... CTCGATCTCCGCCAAATCGATTAAAATTTGTTTAA 1155 37 100.0 33 ..................................... GCTGGGACATGGCCCAATCATCTGCAATCTCAT 1085 37 100.0 34 ..................................... ATATTGCTCTCCTTGCAAGAGGGCAAATGGTTGA 1014 37 100.0 33 ..................................... ATAGACCTCGACAACTTGGTTTCGAATCATCTG 944 37 100.0 37 ..................................... TCCGAAGATAATGACATGGCAAACGTTGGAATGAGTT 870 37 100.0 34 ..................................... TGATCCCAACCCATGTCATTAGCCCCGCACCCTT 799 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 100.0 34 GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : AGCGTCTCGCTTCTATTGGCGCTCGACAGGCTGGACAAGTTCTTAAAGAATAATAGAGTTGTCGAAAATTTCATAATTCAGATTAAAAAACTTTTTCAATCAACCATTTCCATAGAGCAGAAACTGATGGAAAAGTAATTTTCAATAAATCTAATGTTTTTAAAATATTAGATTTTACAACAAACCTAATTTCAAAATTAGCAAGTAAACGTTTCCTTAATTACGTCTCTTTAGATAGTTATAAATTTATAATGTTCTACTTTTTTAATCTATATTATTGACCCCGGAAAGACGATTATTTACAATAAAACGTTTTCCGCGAACCTGTTTCTCCCGACAAATCACGAACCTTTCGCACTCTTGTATTGTTTCTCTGTTTGGCGATTGAACGGTTTCGCTTAACGTTTGTTCAGCATAGCAGAAATAGGTTCGCAATTATTATGTCTATAAAGTCTTATAAAGCTTTTGTAATTCATTATTTTGGATCCTATCAAGCCGCT # Right flank : GATTACTTATATAGTTTCCTTGGATTCAGTCGCATTGTGAAGTTTATAGATTTTTAAATTGCATTCTTACTGTTCAATTCAGCGGTAGTTCCCACAGATTTTGTCGCATTACGAGTTTTTAAACATTCATTTTTCGTAATTAGAATTTGTAATAGTTCCCACATTTTATTTTTACGGAAAAATCAGTTTTTATAAAGTAAATCTATTGTTTTGAGTTTTTTTCTGGTTTCATTTTCACCGGTTTTTGGATGTTTTTCGGTGATTTTGCTTTTTAAATTTCAATTCTGGATAACATTTCATTTGCGTTGACCCTTTTTCAGAGACGACTATAAACTACCTACATAATGTGAGTTCGGCATAACAAATGCGAAAGCGATTATTATGCTGCGATCCATAGTGAGCAGCATTGAGTTTGAAAAATTCCGAAGGAATTGGAGCGAAAACGAACAACTCAGCGTCTCGCTTCTATGGTCGCTCGAAGTAAACTCAGCGTCTCACTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 1541-578 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHH01000032.1 Leptospira noguchii str. Bonito ctg7180000009025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1540 37 97.3 34 .............G....................... TCTTTTCCTTCTGCTTTCAAATCAGAATAGTATT 1469 37 97.3 34 .............G....................... TTCTAATCCATCTACTAAAATCGACGGTGTTGTA 1398 37 97.3 35 .............G....................... CACTTTGGGATAGTATGTAATTTGTCTATTTCGAC 1326 37 100.0 33 ..................................... CTTGCCAAACTGATACTGAGTGACGGCCGCAAG 1256 37 100.0 34 ..................................... AAATCGAATCACAAAGAGAAGTTCACGGCGAAGA 1185 37 100.0 35 ..................................... TCTCAAGGTATTCATGCCGCCCCCTTGGCGGCAAG 1113 37 100.0 34 ..................................... ATACATTCGTTTGGATTCGTAAACCCATTTGCTA 1042 37 100.0 34 ..................................... ACATCTCTGTTTGTTGTGGATAGTATCTGTAAGA 971 37 100.0 34 ..................................... GGAAGAGCGGATGAGGTAGCATAACCAAATTAAA 900 37 100.0 34 ..................................... TGACTTCGCCGGTTTGGTGAAAATGCTCCGAAGA 829 37 97.3 35 .............G....................... AAAAGTTGCGAGTTTCTATAATCTCGATACGCATC 757 37 100.0 35 ..................................... TGGATATTCTAAACCGAACTCATATAAAGCGACAA 685 37 100.0 34 ..................................... TGATCTATCTCGTTGTAACCGGAAAACTGAAAAT 614 37 97.3 0 ..........................C.......... | ========== ====== ====== ====== ===================================== =================================== ================== 14 37 99.0 34 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGTCACGTTTAGGTTCGCAATTATTATGTCTATAAAAGCTAATAAAGCTTTTTCTAATGTATAAATTAGTATCTTTGTGGCCG # Right flank : ACTTTTGGGAATAATTCATGCGTTTCGTATACAATTTCTTTCTCTTATTAAAGAAACGGGTTGAAACCTCAAAAAGACGATTATTATAAAAATAAAATTATATAACGTAAGTTAGGTGCCGATTATTTTTTTGTAAAAAAGTGTGCAAATTGTTATAAACGATTTGAGTTCAAGTTAAAAAATGTAGAAATTAATACATTCTATAAATTGAATATACAAAATCTATCGTTAAACTTTATAGTAAAATGCAATTATGAGGCGCAGCTCGTGGGAACCTCATACAAATTAAGAATATTCTACCTCGATTTTCCATAGAAGATTTTGTCAAATTGCCGGTTGAATTTATGGAAGGATTTGAAAAAATAGAGTTTCGGAGAATGTTTCAAAATAATAAGTCTGTAATCAGGTTGTAGTAAGTAAGCATAATTTGAAGTTCTAAATCAAATAAGTTGTGTTTTATCATATTTCCTAAATTAGAGTTGTTGAAAAATTTGGAAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTTCTCTTGTTAAAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 704-1654 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHH01000286.1 Leptospira noguchii str. Bonito ctg7180000008962, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================================================== ================== 704 37 100.0 35 ..................................... ACGTTCTGCTTCTGTTTTTCGGCGAGGCGCATAAC 776 37 100.0 35 ..................................... TATCACGCAAGATTGTAAACAATCCTACGTTAAGA 848 37 100.0 34 ..................................... TTTGACGACTCATCAACCTTAACTCCATTAAAAA 919 37 100.0 34 ..................................... ACAACCGGTCCACAGGGTGGACCGAGTGGAACCC 990 37 100.0 33 ..................................... AAGACACCTTTGCCGGTTACATCGCAAGAGGGT 1060 37 100.0 36 ..................................... AAAAATCCAAGCGAGCCTTTCTCAAAATTATAGTTA 1133 37 100.0 35 ..................................... TTCTACTATACAACTTGTTGCAAATAAATCATAAC 1205 37 94.6 35 .......C...............A............. TATTTAAGCGAGATTATGTACGGATTAAATATCTC 1277 37 100.0 35 ..................................... CTGTTCGTAAGATCTCGTTTGTGATTTAGTTTAAT 1349 37 100.0 34 ..................................... TTTGATAAAGGATACAAGTTCGATATTGGTAAAC 1420 37 100.0 37 ..................................... AAGACCTAAACGAAGATTTACCAGGCACAACGATTAT 1494 37 89.2 86 .......C................G.C.....T.... TGTTTTCCAAGTCACGGGGGAATAAGTTGACGAGGAGTGGATTGAAACTTTAAGTTTTCCTGGGGTATCAGAGTCCTTATTTGTGT G [1515] 1618 37 91.9 0 .......C..T............A............. | ========== ====== ====== ====== ===================================== ====================================================================================== ================== 13 37 98.1 39 GTTTCTTTCTCTTGTTTGAGAGGGAGTGGATTGAAAC # Left flank : AGTAATACGAGTTTATAGAGAATTTTACTAGGTTGTTTCAAAGCTAAAAACTTTGCGAATGTTTACCGACGAGTCAGTCTGTTTTACTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCTAAATCTCTAAAATTCGTAAGACCTAAAAAATATTTTTTTTAATTTTAATTTGAGACTGCTTCTAAAAAATCCTTTTGCTTCTTTTCAAAAAATTTCAGTTAGGTGAGAACTTTAACTTCATTTATAGCTTAAATCTATCCCTTGTTATAGGTTTGCCTTTGAGTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATTTATTACGGACCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATTGAACAGATTTGCTTAACAATTGTGCAGTATGCTGAAATAGGTTCGCGATTATTATGTCTAGAAAGTTTAATAAAGCATTTTATAATACATTATTTTCAACCCTATTAAGCCGCT # Right flank : CATTCGTTACGTCTGCAAAAAGGAGATTCGTAAAATGTTTCTTTCTCTTGTTTGAAGAACTACATAATAGAGTGTCTAAAATTCCATTCCTGAAACGGTGATACTTTCAAAATTTATAATACTCTAATATATAGGATAAATAGTATTCTAGTGAATTGATAGGCAAGAATGATAATTTCTAAGTTTTGTGGTAGTTCCCGCAAATTTAGGGAAATTGAATATCAAACTGCTACAGGCTAAATGTATAAACTACGACTGATTTCCATTGAACAAAAGTTAGTAGGAAAAAATTTTTCTAAAAATAGGAATTCCTACATTCATTTTTATTTTTACAGACTGAAGCCTCTCTTTCGGAGAATGACTTAGAACTTGTCTCAAAACCGTCCAATATGGGAACTATTACGAAAATGGAACGACATTAGAATTGTTTGAAAGTTCGCAAATTGCTAAATGCGATTTAATTTATAGGAATTACTATACTTTATTAAATATTTCTAAAG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTTCTCTTGTTTGAGAGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //