Array 1 15360-16380 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QQPE01000061.1 Staphylococcus pseudintermedius strain ST68 K13_S24_L001_R1_001_contig_61, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     15360	    36	 100.0	    30	....................................	GAATGCTTTGGAAAAGATAAAGGCGACGGC	
     15426	    36	 100.0	    30	....................................	TAAAAACATCGGTTTAGGTACGATGGTTGC	
     15492	    36	 100.0	    30	....................................	CAGAGAACATCACAACGAACAACATAATAT	
     15558	    36	 100.0	    29	....................................	TAAAATCAGAAACAAAAGGGCAAGCGGTT 	
     15623	    36	 100.0	    29	....................................	AAAGTTAGACAACTGGACTAAACAAGCAA 	
     15688	    36	 100.0	    29	....................................	CTAAATGCGTCTTGCTACTCACACCACTG 	
     15753	    36	 100.0	    29	....................................	AGTGGTTTTGCTTCCTTAGCAAGGAAATC 	
     15818	    36	 100.0	    30	....................................	CATCATATTTACGTTTTTGCTCATCTTGAA	
     15884	    36	 100.0	    30	....................................	TTGGTTTTCGGACAGTTTAGTGTCTGTGAC	
     15950	    36	 100.0	    29	....................................	TACTTTAATCTGGAAAGACGGGGAGATGG 	
     16015	    36	 100.0	    30	....................................	TTTAACTAAAACTGGTTATACGACTGAGCG	
     16081	    36	 100.0	    29	....................................	AGCAAAACGGTTCAAACGTTGGGTAACGT 	
     16146	    36	  97.2	    30	............................A.......	AATGCACGTGCTGTTATGGTGAAAGGCTAT	
     16212	    36	  94.4	    30	...........T................A.......	CGAAAGTAAAGATAGTATGCAAGGTGCAAG	
     16278	    36	  97.2	    30	............................A.......	GTTATGATGTTTGGCGATATGGGTCGTCGT	
     16344	    35	  83.3	     0	T........T................-.CA.C....	|                             	TC [16376]
==========	======	======	======	====================================	==============================	==================
        16	    36	  98.3	    30	GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-12] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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