Array 1 95171-94164 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOSY01000016.1 Escherichia coli strain MOD1-EC6749 MOD1-EC6749_16_length_96709_cov_62.4625, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95170 29 100.0 32 ............................. ATTCATTCGTACAACGTGCTTTTACAACGGAA 95109 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 95048 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 94987 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 94926 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 94865 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 94804 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 94743 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 94681 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 94620 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 94559 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 94498 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 94437 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 94375 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 94314 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 94253 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 94192 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1540-2544 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOSY01000019.1 Escherichia coli strain MOD1-EC6749 MOD1-EC6749_19_length_85853_cov_60.7009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1540 29 100.0 32 ............................. GATTTATTTTTTGCAGGGGGGCATTGTTTGGT 1601 29 100.0 32 ............................. CCGCAAGGGAAATCGCAAGCCGACTCGGTGAA 1662 29 100.0 32 ............................. CAAAGAAATGTAAACTAATTTGAAGAAATTAA 1723 29 100.0 32 ............................. GACTGCGAGGGGTATTAAAGTCCGACGTGATT 1784 29 100.0 32 ............................. AATTAATGCCAAAATATTTAGACTTATATGCG 1845 29 100.0 32 ............................. GAAATTTACGAAAAATCAGAAGGCGCGCTTTC 1906 29 100.0 32 ............................. TCAGTTAGCTCACGAATTAACGGGATGCCGTA 1967 29 100.0 32 ............................. CAAAAATATGTTTTGCGTTTGATAACGCGTTG 2028 29 100.0 32 ............................. AATGGTTTAATCGCGGAATGATTTCGGCTCGA 2089 29 100.0 32 ............................. TAGTTCAAACTATTGTAAAAGGGGAATGAGTC 2150 29 100.0 32 ............................. GATATATTGTTGTTTCTGAAATGCACGCTGAA 2211 29 96.6 32 ........T.................... CTGCGGCTATATCTTACAGGTTACCTTCTGAT 2272 29 100.0 32 ............................. CCGGAACATACCGCTGTCTGCCGGAGCCGGAA 2333 29 100.0 32 ............................. GACATCGCCTACCCGAGTTTTCGGCTATGAGC 2394 29 100.0 32 ............................. CCGCCAGGCAGCCGGGAGCCGAAGGTGCGCCC 2455 29 100.0 32 ............................. CCGCCAGGCAGCCGGGAGCCGAAGGTGCGCCC 2516 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTTACCGGGGGCACGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTGAAAACAAACGGATATGCTTAGT # Right flank : GGCTCACTCTGATGCAGTTTATGTAATTCACGAGTGTTCCCCGCGTGCGTATTTTCATGGAAGGAGATCAGTGAAGGTAATTTAAAAATGCCGTTACTCACCGATCTCCTTCACGATAATACGCAGTCAGTTTGCAAATAATCCCCCCATCTTTTGCAATAGACGTGTTTTCTCTGGTGGGGTGATTACCCAGTCTTTTTTACTGTGTCTGACCTTTTGTACTGTAGTGCAGTTGTAATGCAAACCTCCCGGGCTTTTGGGAGACAGCATTTCAGTCCTGGTTCCATCATTACCATTTTGTTGATTCGAAACGAAAACCTTCATCAAAATCGATCGATTTTACCGATCGATATGATCGCATCGATCGGTTGTAACCATTTTACCCTATCTTTTGCATGGTTTTAAAATAGGCAACCCTATTTGTCGGGTAGGGTAAGAACCAACGGAGATGATTGAAATGAAAAAGGTTATTGCGGTTTCAGCGCTTGCAATGGCTGGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21963-21201 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOSY01000025.1 Escherichia coli strain MOD1-EC6749 MOD1-EC6749_25_length_65017_cov_62.4971, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21962 29 100.0 32 ............................. TTGATTTTCCGTACACGATTACCGTCATGATG 21901 29 100.0 32 ............................. GTGATTGCGAACCTTGTCTGTTCGGATGGCAG 21840 29 100.0 32 ............................. GTGGCGTCCCGTTGTTCCTTGATGAGCAATCG 21779 29 100.0 32 ............................. CCAAAGCGGCGTTTGCCAGCAGTCTCTAACTT 21718 29 100.0 32 ............................. ATTTAAGTCAGCGTATTGATAATTCAGTCGAA 21657 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 21596 29 100.0 32 ............................. CCCCCGGTGATCGAGATTCCAGGCGGGGAAAC 21535 29 100.0 32 ............................. ACCCGATCAATCAGTCGTTGTATCCAGCGCTC 21474 29 100.0 32 ............................. TACCCGAACCGCTCCCCGCACCATGCTTTATC 21413 29 96.6 33 ............G................ AATTCCGAGCCTTTCGGATACGTTTCAGAACGC 21351 29 100.0 32 ............................. CATCACGAACCCGCTAAAGTCCATTCGGTAAT 21290 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 21229 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTATTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTGCTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTAATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //