Array 1 96018-94525 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGHN010000021.1 Escherichia coli strain GU684, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96017 29 100.0 32 ............................. CGTCCAGTGATAGAACTCGACGACGGAACAAC 95956 29 100.0 32 ............................. ATTTTTTCCGTTAGTTAGTGAGCGTGATAACA 95895 29 100.0 32 ............................. AGGGTTACAGAAAAGAAGCATCGCAACTTGAT 95834 29 100.0 32 ............................. CACAAGAAAAAGATATCGCAGCGTCATTTATG 95773 29 100.0 32 ............................. GTCGCTTTTGGCGGCGTGGGCTAATGCTGGTT 95712 29 100.0 33 ............................. TTTTCGGGACGCACTGCAACCTACCAGGACCGC 95650 29 96.6 32 ............................T GTTTCGCCGCAAATACTACCGCAACGGCGCGC 95589 29 100.0 32 ............................. CGAACAGAAAAACCGTTCTCAGCCAGCGTCAG 95528 29 96.6 32 ....................A........ CAAACGATGAGCGGGCCAACGAATCGCCGTTG 95467 29 100.0 32 ............................. ATCCACGGTTCGACGCCGATCGCCGTGGCTAT 95406 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95345 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95284 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95223 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 95162 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 95101 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 95040 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 94979 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 94918 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 94857 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 94797 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 94736 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 94675 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 94614 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94553 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 173828-174466 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGHN010000010.1 Escherichia coli strain GU684, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173828 29 100.0 32 ............................. ATCTGGCTCTTCAAAAAACAGCAGCCTGAACC 173889 29 100.0 32 ............................. CCGCCATCACAGAACCTTGCCAGACCGTATCC 173950 29 100.0 32 ............................. CGCCCAGGATCAGCTTACTGCGCACCGTTTCC 174011 29 100.0 32 ............................. GCGGGTTTTTTACGCGTGGGGTTGCAACAGGT 174072 29 100.0 32 ............................. AAAAAACAGCAAAAGATGAACAAAATATAAAC 174133 29 100.0 32 ............................. TTCATGCGCCGCCCCACTTCACTGATAGCGAA 174194 29 100.0 32 ............................. CTCAAAATCGGCGGCGGTTAAGTGGCTGACAT 174255 29 100.0 32 ............................. GATCTAAAAAGGATCTGCGGAACTGAAAAAAT 174316 29 100.0 32 ............................. GGTATTTATTGTGCAATTAGCTTTGCATTAAA 174377 29 96.6 32 ..........................A.. TTTAGCGTAAAGTCAACAATTACTTGGCTTTT 174438 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //