Array 1 2297-191 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQU01000215.1 Streptomyces kanamyceticus strain NRRL B-2535 B-2535_contig_215, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2296 29 72.4 32 ...T.....A.GTA......A...GC... GAGGTCATGCAGTTGTTGAAGAATCCGCTGCG 2235 29 86.2 32 ........T..GT...........T.... TGGCTGAGTGATCCGAAGAACTGGGTACGTGT 2174 29 93.1 32 ....................A...T.... TACAGCAAGCACCCGCCCGCCCTCTTGTTCGC 2113 28 89.7 30 G...-...................T.... GGGCCGGGTCCGGCTTGCGGATGCCGACCG 2054 29 79.3 32 AGT........G..T.........T.... GCCTACAGCCGCCACCTGGTCAAGGCCGGAGT A [2033] 1992 29 75.9 32 GC.........G.T...A......T.T.. TCAGTCGCCGGTGCCATTGAGGGCGAGTACCG 1931 29 79.3 32 ....C.G..A.G.......A....T.... ACCTCGGCCATGTAGAGCGCCGTACGGCGCTG 1870 29 69.0 32 GCA........G..G.TA..C...T.... GACGGCGACCGTCCCGTCATGACCACGGGCCT 1809 29 82.8 32 G.........AG...T........T.... GCACGATTCGGCGCGGGTACTGTCATGCCTGC 1748 29 89.7 32 G...............G.......T.... GGACGAGCGCGTGCTCTGGCCCGGCTCGGTGA 1687 29 82.8 32 G...........T....A......T...A GCCGTCTGCCGGGCCGGCGGCCCCGGACCGTC 1626 29 86.2 33 G................A......GA... TGTGCTGATCTGTGCCGCGAACTCCCGCTCGGC 1564 28 86.2 33 .........C.-..T.........T.... GGGATCGTCGCCAGCTGTCCAGTTCGTCGGCCG 1503 29 86.2 32 ...........G..T......T..T.... GCTGCGGCCGGAGAGGTCACTAGGCTCGTGCT 1442 29 89.7 32 ..............G..A......T.... GCCCGGCCGACGCGGGTGCGGCCCTTCTCGTC 1381 29 82.8 33 ...T.......C.A..G.......T.... TACAAGCAAGGCGTGTTGGTGTGGGAGGACAGT C [1361] 1318 27 75.9 32 ..............TA.--T....TC... AAGGGGGACGAGTCGATCTACAACGAGGTCAT 1259 29 82.8 32 G.......GC...T..........T.... AAACTCAACGACGTCTACCGGCCGTACACGCA 1198 29 75.9 30 T.A..........T...A.....ATC... CAGCTCGGCCTTCGTCATGATGAGCGTCGA 1137 28 75.9 32 ............T.T-.C......TCT.. GACGGCAAGGCGCACAACCGCTGTGTCGTCGG 1077 29 86.2 33 ...T..........T.T........C... CCGGGGCGCCAGCTGCTTCGTGGGCCACACTGT 1015 29 82.8 32 G.......T..G............GA... ATCAAAACCACCCGCCGCTCTTCGTCTTCTTC 954 29 86.2 32 ...........G..T.......C.A.... ACGGGCAGGGGCAGGGGATGCTTCGGCTCGAG GG [930] 891 29 93.1 32 .........A..............T.... GCCAAGGAGTCCAAGCTCAAGATCATGGCGTC 830 29 89.7 32 .....T........T.............T GCGGCGGCGATCCGGGCACTTGAGTCGGTGAG 769 29 82.8 32 ...............T.A....C.T..T. TTCCGCGCGCTCGATGCCGTCTTCCAGTCGAG 708 29 86.2 32 ...........G..T.........TC... GTATCGCCCTCGATCTCCCAATCAATCTCCGG 647 29 89.7 32 ..............T.....A...T.... AAGGCCGACACCGTCGCCATCCCCTCTCGGCC 586 29 86.2 32 ............T..........AT.T.. GACCCTGCCGTACTCGGCACACGCGTCTGTGC 525 29 82.8 32 G..........G..T..A......T.... TCGGCGGACATCGTGTGGACCGGCACGCCTGC 464 28 96.6 32 .................-........... TCCAGAGCGAGCGAGAGGCCGAAGCCCCAGCC 404 29 86.2 32 .......T...C...T........T.... GGTTCCTCGCACAGTGGGCTGGTCTCGGGGAG G [391] 342 29 89.7 33 .C......................T..A. GAGCTGGGCAGCCCCCCCTGTTCAGTTCGAGCT 280 29 86.2 32 .........C.G..T.........T.... GTCCACTGAACGACGGTGACGCAGGCCTGGCC 219 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 35 29 84.7 32 CTGCTCCCCGCACCCGCGGGGATGCTCCC # Left flank : GTCATAGAGGCACCCCCCCGGATCGTAGGCTCGCAGCGTCGGCCGCTGGTGCTCCCCGCCCGCGCCTGCGGGGATGGACCCGACGAGGCAGCCATGCAGGTCATCCACATGC # Right flank : CGATGACCGACGCCTACGAGCGGCCGCACTGCCGCAACACCTGAGACGAGAACACTGATGACCACCCTTCACCCCGAGCGCGGCTTCATCGTGTCAGCCTCCTTCATGAACACAGTCCCCGCCGCCCCCCCCCATTACCGTTCTCGTAGTCCCGCAACGGGACTACCGGCCTTCGGAGTTGGCATGACTAC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.24, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.06, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [38-59] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 4440-1791 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQU01000468.1 Streptomyces kanamyceticus strain NRRL B-2535 B-2535_contig_468, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4439 29 96.6 32 ...........A................. GGTCACCAGGTGTCCTCGTTGAGGGTGGCGTG 4378 29 100.0 32 ............................. CGAACTGGAGTGTGACCATGCCCGACCCGCGC 4317 29 100.0 32 ............................. TCGCCAAGAGCGTTGCGAACGCGGCCGCCTCC 4256 29 100.0 32 ............................. CAACTGCAGCACCTGTTCCGTGTGCACGACCC 4195 29 93.1 32 T.......T.................... GGCGCGCACTACGCGGAGATCGTGCGGGCCAA 4134 29 93.1 32 .....................A...A... GCCCTCTCCGTCTGGCACGACAAGACCGGCGG 4073 29 100.0 32 ............................. GCATCACCCTCAACGAGGCCGCCGCGAACAAG 4012 29 93.1 32 .............G.......C....... AGCGGGGACAGCCTCAGCGCCGCCCTGCCCGC 3951 29 96.6 32 .................A........... CAGTCCGTGCGCGGCCTGCGGGACAACGCCCG 3890 29 93.1 32 ...........A........A........ ACGGCGGGCGGCACCGTCGGGTCCCAGATGCG 3829 29 96.6 32 ............T................ GGTCGAGGAAGAGCCGAACTCAACCTCGATGT 3768 29 96.6 32 ........................C.... GCCCTTACCCTCCAGGCAACCCGCTGGTGGGT 3707 29 96.6 32 ..............T.............. GGCGGGGTGGTGTATGTCCACGCGTGGGTACG 3646 29 93.1 32 .....................A...C... CATTCCCACCAGGTGGTGCCGGGGGTGAGGAG 3585 29 100.0 32 ............................. ACGGCGCTGATGACGGCGACGATGGCCGCTGC 3524 29 100.0 32 ............................. ACCACCGGCCGCCGCTGCTCCGGCACCAGCCC 3463 29 96.6 32 ..............T.............. CAGAACTGCTCGGTCTCGCCGTCCTCGTAGAT 3402 29 89.7 32 .....................G..TC... AAGACCTCCGCGTCCGGCCCCGGAGGGTTCGG 3341 29 86.2 33 ...T.......A.........A...A... GAATGCCGCCGGTGCGGAGCCGAGGCGGAGGAG 3279 29 96.6 32 .................A........... TGATCGAGGGCGGCGTGCCACTCGGCGAGCTA 3218 29 96.6 32 ..............T.............. TTGCAGGTGGGATCGTGGATATCACTCAGAGT 3157 29 93.1 32 ........T...T................ AAGCCCCTCGCGCAGGGCCTGCTGACGGGCAA 3096 29 89.7 32 .................A...A...A... ACGGTGCGCACGCGCGGCGGAGACCTCGTCGA 3035 29 93.1 32 .....................A...A... TTCGGCATCTGGATCTGTCCCGCCTCGATCTG 2974 29 100.0 32 ............................. CGCCACAGGTCCTCGTCTTCGATCCCGGTGTC 2913 29 96.6 32 ..................A.......... CCGCCCTCCGAGGGCGGCCGCGGATTCCGGCT 2852 29 93.1 32 .....................A...A... TGTCGTGACGAGTGAGACGCTGGGGAACCACC 2791 29 93.1 32 .....................A...A... GAGGAAGAGCGCCGGTCCTTCTCAGAGATCGA 2730 29 89.7 32 ..............T......A...A... TGCTGGATCCGCACGCGCGTGGTGCCCGGGGT 2669 29 100.0 32 ............................. GCCTCCAAGTCGAGGCGTTCCTCCAGGGATTC 2608 29 96.6 32 .................A........... GCGAGCGCCAACTCGTCCTCCGCGTACGGCCC 2547 29 93.1 32 .....................A...A... TTACGCGGCGGTGACGTACTGCTGGGGCCGCT 2486 29 89.7 32 ..................A..A...A... TTCGGCATCTGAATCTGTCCCGCCTCGATCTG C [2477] 2424 29 100.0 32 ............................. TCGTCCCAGCCCACCGCCGCGTTGCGGCGCGC 2363 29 89.7 28 ........T.......AA........... CGTCGGCGCTGGCTTCGGACGGGGTGGG 2306 29 89.7 32 ......T..........A...C....... CAGACCTGGCCTGCGCGATCCTCGTAGGAGGA 2245 28 86.2 32 ........-..A....T........C... CGGCCGAGCACGGTGCCCGTGCCGCGTGCGGT 2185 29 89.7 32 ...T.................A..T.... AAGACCTCCGCGTCCGGCCCCGGAGGGTTCGG 2124 29 86.2 32 ...T.......A.........A..T.... AGCGGGCCGATGCCGCCCGCGCCGGTGTCCTC 2063 29 100.0 32 ............................. CGCCCTTCACTGTGCACCCCGCAGGGCCGGGG 2002 29 96.6 33 ......................C...... CCGGTTGAGGGAGCCGGTCTCACGACCGGCTTA 1940 29 89.7 32 .................A...A...C... GGGATGAGCTTGACGCGTCGCCACAGGCCATC 1879 28 79.3 32 .............A-.....CA..AA... ACGATCGCGTGGATGTGCGGTTGCCAGCCTGA 1819 29 72.4 0 ......T...TATT.......A.....TA | ========== ====== ====== ====== ============================= ================================= ================== 44 29 93.7 32 CTGCTCCCCGCGCCCGCGGGGTTGGTCCC # Left flank : GAGTAGCCCGGTGAACACCCCCGGCCAGCGCCCGGCCAGCGGTCCGCGCGACCTCACCCGCATCGCCGACCGAGCTTCCTTCGTCTACCTGGAACGCTGCACCATCCACCGCGACGCCAACGCCATCACCGCCAAGGACGCGGACGGCACCACCCACATCCCCTCCGCGACCATCGGCACACTCCTCCTCGGCCCCGGCACCCGCATCACCCACCAGGCAATGAGCGTGCTCGGCGAGAGCGGCGCGGGCGTGGTGTGGGTCGGTGAACAGGGCGTGCGCTACTACGCCTCCGGGCGGGCCCTGACCAGCTCCTCCCACCTCACCGAGGCTCAAGCGGCACGCTGGGCCAACCGCCGCAGCCGCCTGGACGTGGCCCGCGCCATGCACCGACTGCGCTTCCCCGACGACTAACGGAGTCCCATTTTGGGTGACTACGCCTGTTTCGGTGAAAGCGTTGAGCCTTCAGACTCCGCTACGACAAACATGCAGGCCACCGAGC # Right flank : CCTGGCCTGACGGATCAGCGGTGGCCCCGTTTAGGAGCGGGTTTTGGCCCCACTTGGGCGTCGGAAAGGCGTTGATCACCAGTGAGTTTTGGCCCCACCTGGCGGTAGCTGTGAGGTGCCTGGAAGCGGATCTGACTGGCATGGCGGGAGTGTGACAGTGCATCGTGCGGTGGTGAATGAATCTGCCTTCGCCGAGCATGAGGACCGTTGGATCTTGGGCCTTCGGGGCCTGGAGGTCACCAAGATCAGCGTCGACTATCAGCTGTCGCTTCAGCTGGGGTCGGATGCCTGGGTTGTTCTGGAAGGCCCGTGCCAGCTGTCTCAGGGCTCTGCTGGCGGGGGCAGTCCGCAACAAATGATGGATCCGGGGCAGCAGGATGCGGCGGCGGCGCTGGCCTTGTTCGGAGCCAAGATCTTGTCGGCTGTGGCTTTCAAGACAGGAACCTTGCGGCTGGTCTTCGACAACGGGCTGCATCTGGTCTGCGTGGCCGATCCGGCGT # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [42-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1062-1578 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQU01000475.1 Streptomyces kanamyceticus strain NRRL B-2535 B-2535_contig_475, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1062 29 100.0 32 ............................. GACGTCCTGGGCAGGCGCGCGGCCGCCGAACG 1123 29 100.0 32 ............................. TCCTCGGCACCGCGTGTGCCGCACTGCGGGCA 1184 29 100.0 32 ............................. GACGCGGACGCCCTGTTCATCGACGACCTGCT 1245 29 100.0 32 ............................. GCGTACCGCACACGGATCCCGTCGGCCGCAGG 1306 29 100.0 32 ............................. AAAGCCCTGGCCGAAGGCAAGACGTCCCCCGA 1367 29 100.0 32 ............................. AGAAGAGGACGCCGCAATGAGCACCCCCGCCC 1428 29 100.0 32 ............................. AACAAGGGCGGGGCGAAGAAGTCCACGCACGC 1489 29 96.6 32 .........................C... TCCCGGTAGCCGCCCGCCTCCCACTGCGCCAT 1550 29 86.2 0 ...........A.G.......G...T... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 CTGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : AGGCGAAGGCCGGCGTTGCCTTCCCGATGTCATGCACCCCTGCCAGCCACACCACCAGTCGACGCGCATCCGCCAGGCCCTCTGGCAGCACCTCGGCAACAAGTCGCCGCACCGCTTCGGGCAACCATCGATCCCACAGCAGACCGGCCACCGCAGCGCTGTCGGCCATGTGTCGCCACAACGGCAGCCAGCCATCCGTCCCTGCGTCGTACTTCGCCCACACCTTGCGGGCAGGATCTGAAAGACCTTCGTTGATGCCGTGCGTCATCCGGCTCCGCCGCTCATCCACAACGACATCCAAGTGCAATCCCCGACGCCGATGGGCGGATTCTTCATCTTCCGCTGTCCCGGTTGCGACGATGCTCTCGAAGGGAGCCTCTAGTGGTGAAGTCTCGTCTGGCCAGACGAATGCCTCTCGTGCCGCTTCGTGTTACATGTCCAAATTGATGAATGTGCCGAAAACGACGAAGGGGACCGGGCATCTCTGCAGGTCAATCAGT # Right flank : CGACGGCGTCCGCGTTCTGGGCCAGACCGGCAAGTGCTCCCCGTAGGCGGGGGCCCAGTAGGGCGCTGGCCGCCTCCGTCCAGTTCGTGCTCGCTGTACGCGCGGGGCCCCAACGCTATGCGGCCGACCCATGACAAACCGTTCGCAGCACAGGAAGCGACGACACGGCGCCCTGAGCGGTCACCGATATGTAGGCTCTGCAGCCTGCTCGTCGCGCGCCTCGACCACCAGAACGGTGTCGTTCTCCCACACCTCGGGCACATCGAGAGACAGCAGCATGCGGTAGCCGGCCCGCACCTCCTCCACCCACGCGCTGTCCTGCCCCGAGCCCTTGCTGCGGATGCGCTCCTGGTGTGAGTACAGGCCCGCCCTGTCCTCGCGCACGATCACGGGCGGCACGGAGCTCTTTCCAACCTCACGCTGACGCGTGGTGGTGGAGGGCGAGGATGGCCTTCACGATGTTGGTGATGCGGTTGGTGCTGCAGCGGAGCTCCCGCAGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4940-1532 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQU01000337.1 Streptomyces kanamyceticus strain NRRL B-2535 B-2535_contig_337, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================================================== ================== 4939 29 69.0 29 .G.T.......GTAT..........G.AA CCGGCTCCGCGGTTCTCGGAAGGGATCGG 4881 29 82.8 32 ........G..G.A...A.T......... GAGCTGGCCGACGAGGTCCTGAAGTCGGGCCG 4820 29 86.2 32 .......T..TG....T............ GAGGCCGACCTGGACCGTGCGCTCTTCGGCCC 4759 29 86.2 32 T.....................C.TT... TAGCCCTCCTCCATCTTGAGCTGCTCCAGGCG 4698 28 82.8 32 ..........T.T...-.......TT... GCTTGCGGGAAGCGGATGCCGCTGCGCCGCGT 4638 29 89.7 37 ........AA......T............ GCGCTCGCCGTCGACACCGTCCCGAAGCTTCGCTGCT 4572 29 86.2 32 .CC.C...........T............ GTTCTGAAGTGGAGCGGCGGCAACCCGACCAA 4511 29 89.7 32 ......T....G.T............... ACGACGGGAGCCGCAGCGGGCGGCATCGGAGC 4450 29 93.1 32 .........................CT.. TGCACCGGGATGTGCAGGAGGAACCCGAAGGC 4389 29 89.7 32 ..........T.....G........C... AAGGGGGTGGGACTGCTGCTCCAGGCGCTCAT GGG [4371] 4325 29 82.8 32 ...........GTA..........AC... CCGCTCGCTGACGCGGTGTTTCGTGCGAAACG 4264 29 82.8 31 ...........G.A...A......AC... ACAACGCGAAGCTCGCCCAAATCCGGATGCG 4204 29 100.0 32 ............................. GACGAGGCGGCCATGCAGGTCATTCACATGCC 4143 29 79.3 32 ...........G.A......C...ACG.. GAGAAGGAGACCCACCATGACCGAGATCCAGC 4082 29 82.8 32 ..........T.TG..........AC... ATCTGCCGCCAGGTGATCGACTGGACGTCCCC G,T [4060,4073] 4019 29 72.4 32 ...T..T....G.AT..A......AC... GCCACCGTCGTGGCCCGCGCCGCGCGACCGAA 3958 29 93.1 32 ..............T...........T.. AAGACGACGATCTCTGATGTAAAGAACGGTGA 3897 29 82.8 32 ...........G.A.......G..AC... GAGACCACCGCGACGAGGGCGGTGAGCGCGCA C [3888] 3835 29 89.7 32 .............T..........AC... AACGGTGTCGGCGTGAAGATCCTGCGCCGGGT 3774 29 82.8 23 .............AA.........AC.T. GCAACATCGAGTTCGGCGCGCAC T [3769] Deletion [3723] 3721 29 86.2 32 ..AT.......G.A............... CCGAACTTCCACCACTTCGCCATGGGTCGGGC 3660 28 82.8 32 .....T.....G..-..........C..T GTCACCGGCAGCTCGACGACGCCATGCGCGCA 3600 29 93.1 32 ........T........A........... GCGGTCCCGCCCCGGCTCGCTGCCCACCTGCT 3539 29 75.9 32 .........ATG....G.A.....TT... GGGCGCCGCTGTCAGGAGCTCGCCGACGCTGA 3478 28 93.1 32 ...........-..T.............. TGGTGTGCCACCGTGCCGGATGCGACCGTTGG 3418 29 89.7 32 .........A....T..A........... TCGATGCACGCGGACCCGCGCACCGTGCACAA 3357 29 93.1 32 ...........G................T GACAACATGCGTCCGGTCAAGCCGGACCGCGA T [3352] 3295 29 89.7 31 ........T..G.............G... GAGGTTCAGCTCGTCCTCGGCTATCAGGGAA 3235 29 75.9 32 .....T...AGG.G..G.........T.. GGCGGAGCCTGGCCCCATCCGTACACCGGCAT 3174 29 79.3 33 .............A.......GACAG... GCATTCGGATCTGTGTGCGAGTTGCCCTCTGCG 3112 29 82.8 32 ...........G...A........TT.T. GGCTCGGGGAGCTGGTGAAGAAGTCGTACCGG 3051 29 82.8 31 ......T....G.A...A..........T CCCATCGGGGCGTGGCTGGTTGATGGGGCGA 2991 29 75.9 32 ......T..A.G.AT..A.......C... GCCCAGGCAGTCTCCACAGACCGGCCCACGGT 2930 29 93.1 32 ...........G..............T.. GCCGTCGCCGGGTACGCAATCGGCAGCGCGTC 2869 29 89.7 32 ...........G.A.....A......... GACCTGGCCAAGGTCGCCAGGGAACTGCTGCT 2808 29 96.6 32 ..............T.............. TCCAGGCTGTCCGTGGAGAACGCCTCGCCGAC 2747 29 93.1 31 .........................T..T TCTCGCGCACTCACGACGAGACCCGGTTGCC 2687 29 89.7 32 ............TA...........C... GACGACAAGCTCTGGAACAACCTGGTGTCCAA 2626 28 89.7 32 ........-..G.A............... CCTTGAGGACGTGGACGGCCCGGCGCTGGCCT 2564 26 69.0 2 ...........G....-..A.CGCA..-- AA Deletion [2539] 2541 29 82.8 32 ..........TGTA...........C... AAGACCGGGGAGGACTTTGCCGGGGGCCGCAA 2480 29 93.1 32 ..A........G................. GGCACACGAGCACGACGGGATGCGGGGCCGGG 2419 28 93.1 32 ...........G........-........ GCGGTGCCGTCGAGGTAGGCGGTCACCGTGCG 2359 28 69.0 163 .C.........GGGT.......-.C..AA GGGCGAGGCGTTTTCCATGGACAGTCTGGAGGGGGCATCCCCGCAGTTACGGGGAGTCAGGTGCGAAAGTCGCCGTCTCGGATGTCGGTTCGAGGGAGGGGGCGGCAGAGGGTGCACGAGCCTCCGGAACATGAGTCGTTGGATCCACTCGATACGCTGCACT 2168 29 96.6 32 ...........G................. CGGAAGGTCTGGGTGAGCGTGGCGGTCGCGTC 2107 29 100.0 32 ............................. ACCATGCTCGCCGACGAACTCGCCCGATGCCG 2046 29 93.1 32 ..........T...............T.. ATTGAGGAGAACGTCACCCCCGTTGAGTACCT 1985 29 69.0 32 AC....T....G.AT....A......T.A CAGGCAATGAAGTGCTCTCGCTCTGGAGTTGG 1924 29 86.2 32 ...........G......T.....AT... GAGCTCGACCTCTCGGTACGCCGCACCCGGGG 1863 29 86.2 32 T.......G..G.A............... CACGGACACAAGCTGTACGACGTGATCCGTGC 1802 29 79.3 32 A.........TG.....A......TT... AACGACGACACCGAGGGCTTCTCCACGACCCG 1741 29 89.7 32 ...........G............TT... GAGGTCAACTGGTGGGACGAGCGGACCGACAA 1680 29 86.2 32 ...T..........T.........TT... TGTTCCAACGGCTGCTGAAGAACTCCCGCAAG G [1659] 1618 29 82.8 29 .C.........G...T.A...G....... GACCTCGCCCGCACCCTTGCTACGTGGGT 1560 29 75.9 0 .G...G.......A.A..........GAA | ========== ====== ====== ====== ============================= =================================================================================================================================================================== ================== 55 29 85.6 34 CTGCTCCCCGCACCCGCGGGGATGGACCC # Left flank : CAAGAAGTGGTTCGCCCGCCGTCTCCAACCCGAAAGCCAGTCACGCACCGCCCCTGATGGCGTCGTTCGCATCGGTGCCACCGCAGACCCAGCAAACCTGAACATCCGTATGCTCCCCACGGTGAGCAGCCCTGGCCCTCACCAAGGCCTGCGAATCGCCCGTGCGGAGATCCGCGGCGTGCTCACAGTCACCGACCCCGCAGCCCTAGTCGACGCGATGACTCGGGGTATCGGCCATGCTCGTGCGTACGGCTGCGGCCTCCTACTGACTCGATGAGGGCAGCGACACACGAGCTAGCTCAGGTACGCTCTCCGCTTCCTTCAGCGGAGAGCGTCTGTGCCCTGGCGCACGGAGGTTTTGGGTGACGGTGTCGAGACAGCAGTTCGGGCTGTCCAATACGGGTGAGCATGTTCCCAACACAAAGTCGATGACGTTGAGCGGACTGTCCTGCTGCCTGAACGCGTGGGATGGGTAACAAGCCGTTGGAGAACAACATCGA # Right flank : GTCGTCATCGCCTGGGCCGCGTACACAGGTGCATGGTGAGCAGAAGGTCATGATGCGCGGCAGGTGACTTCAGGATTCTCGAAGGTTCGTCGTCGCAACCGGTACGCCGCATCACACTGGCGGCCCCGCAAGTGCCTGCAGTTCATAGTCTCCACTGGCCGTCATTTCGGCTGCCTCCGACAGCGCCCCGGAGGAGAGGGATCCGCTGCCGTCGGTCATTAGCATGGCTCGCTACCGAAGGAGCGGACCGAAGCCGAGATCCGCCGCTTGGTCGTGTACGGGCGGGAGTTCACCGGCCCCGTCCCTGCAAGCTCGTCGGCCTCGCCGCGGTCTTCGGCACGTCCGTCCCTGGGGCCGCCGGGCCGCCTATGGGCGCCAAGAGGGCGCCGACGTTGAGCAGGCCACCGGTGATGCTCCACCAATGAGGACGCGCGCAGCGGCCCTGTCCGAGCGTGCGAGCTCGGATATCAGCTGCGGACGACGCCGTCGGAGTCTGGGAG # Questionable array : NO Score: 4.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.28, 5:0, 6:0.25, 7:-0.27, 8:1, 9:0.06, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [78-93] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16940-18897 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQU01000337.1 Streptomyces kanamyceticus strain NRRL B-2535 B-2535_contig_337, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 16940 28 75.9 86 .C......G.........C.AG..-G... AATGCCCCGACCGAAACCTCGAACAACGGCAGGAACTCCCTACGTCGGGAACATCTCCTTGAATGCAGTGCGACGCAGATCGGCTC 17054 29 75.9 32 C...G.T......AT..CA.......... GAACTTCGTTACAAAGCTGCCCTGTTGTTCCG A,T [17058,17066] 17117 29 75.9 93 C.A..........A.C.AC.....C.... GACGCGGCGGCTAGGATCCAGCACGTGGCGGGCCGTTCCCCGCGCACACCGAGACAGTGTCTTCGACCGGCTCGTCCTGGCCGACGTGAACAT C [17122] 17240 29 86.2 32 C.A........G..T.............. GGCTGCCGGGCGTGCGGATCCCGATACAGAAC 17301 29 89.7 32 .C............T..........A... TACGGCTGCTTCGGCACCCCCCTCACGGCACT 17362 29 96.6 32 ...............A............. ATCTCGTGTGCCATGACCACGGACTTCACCCT 17423 28 86.2 32 C...-.........T..........A... AACGTCGTCCCGCTGCCGCGCCTCGGTGCTAG 17483 29 89.7 32 .C.........G..T.............. GCGCACCGCGTGGCGATCCTGGAGCACGGCAA 17544 29 86.2 32 C...............A..TA........ GCGAAGGTGCCGACGAGCAGCCCCAGCGCGTG 17605 29 93.1 32 C..........G................. ATCGGTTTCACTCCCCCGGAACCGTCCAGCGC 17666 29 96.6 32 ..............T.............. CGTCCCTCGCCGTTCGGGCCGTTGGCCTCATA 17727 29 89.7 32 .......A..........A.....G.... GCCGCGCAGGACAGGAGGCGTTCGGGCATGGC 17788 29 100.0 32 ............................. GGGCATATCTGGGTGGGCACAGTCGAGATCAC 17849 29 93.1 32 ..A...........A.............. GCGTCGAGCTGGGCGGCCGGGGCCTGTTCTAT 17910 29 89.7 32 .C...T......................T TACGCGTTCGACCACACCGACGAGATGGCTGA 17971 29 86.2 32 C.........AG...T............. ATCAGATGGCATGGTCTCGCCTCTCTCTGAAC G [17988] 18033 29 86.2 32 C........T....T......G....... ATCGGTGCCGCAACGGGTCCGGCCCGTCTGAT 18094 29 100.0 34 ............................. GGCGGAACGATCACGGAACTGGACATGATTCTGT 18157 29 89.7 76 ..........TG..T.............. GACATCACCCGCGCCGAGTACGCGCTCCGCCTGTGCTCGTTCCCCCTGCCTGCGAGATCCCCGAGCCGGACCCGCC 18262 29 89.7 32 ...............A........GG... CACACCCTGATCGCTGGCGCGACGGACAACGG 18323 29 89.7 32 T........A........A.......... TCCGCCTACCTGACGTGCAACATGGTCGTGGA 18384 29 89.7 32 .CA.....................A.... GTCCAGACCCGGTACGCACCGCTACACCAGGC 18445 29 96.6 32 C............................ GACATCGGCCTGTTGGGCAACACCACCCAGCT 18506 29 96.6 32 ...........G................. TCCGCGTAGTCCGTGGTCCCGTCGGATCGGTG 18567 28 93.1 32 .....-...A................... ACCTGCTCGGGGTAAGGCGAGAGCAAGGCCTC 18627 29 96.6 32 ..............T.............. CGCTACTGCAATGCCGAACGCCGCCGATTCGC 18688 29 93.1 32 ..A...............A.......... GTGACCTACCACCTGTCCGAGCAGGCTCACAT 18749 29 93.1 32 ...........G....T............ GCCACCGGCGTCCCCAGCGGCGTGCACCACCC 18810 28 96.6 32 ........................-.... AGCTTCACGTACTCCTTGGGTTCCTTGTCCGA 18870 28 93.1 0 .................-.......C... | ========== ====== ====== ====== ============================= ============================================================================================= ================== 30 29 90.5 38 GTGCTCCCCGCACCCGCGGGGATGTTCCC # Left flank : CAAACTCGGCTTCCTCCTCACTCAATGGCACAGCAGCATCGAACGGGTCGTCCCCAGCCCCCAGCCGATCGGCACCACGGGCCAGCAGCGAGGACCAGTGAGGCACGTCCAAAACAGGCCCGCAGTCATGCAGTTCCCCCACACCGTCGAGACCGCGATGGATCGCCTTGCGCCATTCCCCAGTCAGCCGCGACTGCGACATCTTGGCCTGCCAAATCCCGTGAATCCCCACAATGTGCACCATGTGCGCATCGCCCCCGGCTATCGCCCCACCATGTCAGACAACGAGACTAATGCGAGCCCACGCCACGACGGCGAACTCTGCCGTTTTGCTCCTCCAGCCCTCAGGCCACTACGCCTCCGGCAGTCTGTCGTCACCAGGACTGGACCACGTAACCATCGCCGTAGGTGCAGGGAACACTGCGGTTCCAGTCCACGGCCCGTCCCGCAAGCGCAGGGAGGGTCCCCTCACCGACGGCCAGCAGCCCTCAAGGTTCTGC # Right flank : CCCCCATTACCGTTCT # Questionable array : NO Score: 4.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-0.39, 8:1, 9:0.11, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [39-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18521-16174 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQU01000091.1 Streptomyces kanamyceticus strain NRRL B-2535 B-2535_contig_91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18520 29 100.0 32 ............................. GCGAAGGGGCTGCTCCTGACGCTGCTCTCCTA 18459 29 100.0 32 ............................. GGGCCACCGTCGTACCTGCCGGGGTCGGCGAC 18398 29 96.6 32 ............................A CTTGGACAGGCACAGCACCTGGCCTGGGTGGA 18337 29 100.0 32 ............................. GCGGTGACACGGGCCAGAGCACGCACGAACAC 18276 29 100.0 32 ............................. CCACCTCACCCGGGTGCGCCCCACCAGATCGC 18215 29 100.0 32 ............................. GCAGTCATGGATGCCGGATACGAAGAGGTCAA 18154 29 100.0 32 ............................. TGCTCGCCGGGCGGGTGTCCGGCGCCGCACTG 18093 29 100.0 32 ............................. GCCGCCAACCGGTTCGACCTCGCCGACCCCGA 18032 29 100.0 32 ............................. GCCGCCGGATACCTCGCCAAGACCGTGCCCGA 17971 29 100.0 32 ............................. GCACAGGGCTGATCGACTCCTCGTACGTACGG 17910 29 96.6 32 ............................T GCCTCGCGGCCGCCCAGGCCATCCCTGGCGGA 17849 29 100.0 32 ............................. GCAGATCGTCATCGGTGTGCGGTCAGCTGGAT 17788 29 100.0 32 ............................. TAGCGCACCACCACGGCCCACCGGGGGTACAC 17727 29 100.0 32 ............................. GTGGTCTCGATCTGGGGGCGGCCGTCCTCGTC 17666 29 100.0 32 ............................. CAACTCGTGGTTCAGCGCCGCCTTGATGCGCT 17605 29 100.0 32 ............................. ATGCTCCACGCCCGAAGTACCGAAACGCACGG 17544 29 100.0 32 ............................. TTCACCGCCGAGGAGTTCGCCGACCGGCTGGA 17483 29 100.0 32 ............................. GCCACCGCCCCGGTTCGGGTGGTGGCCTCTCA 17422 29 100.0 32 ............................. TCGTCCAGGTCCACGACGACGACCAGCACGTC 17361 29 100.0 32 ............................. GCTGCTCGCCGCCGCTTCCCCCGACCGTCAGG 17300 29 100.0 32 ............................. CCGCCCGCCGTCGCCACGGCGTACATGACGGC 17239 29 100.0 32 ............................. CGCAGGACCGTGTTCTGCGGGAGGAGTTCGCC 17178 29 100.0 32 ............................. TGGCCTTCGCCAGCGGGCCCAGCTTCTTCAGA 17117 29 100.0 32 ............................. CCGGGCGTGGAGATAGCGCCCCCGGCCACGTT 17056 29 100.0 32 ............................. TACGGGCGCGTCCGGGCGGGCTGGTGCTCCTC 16995 29 100.0 32 ............................. CACCTTGGCCCGGATCGTCGACCAGTTGGAGG 16934 29 100.0 32 ............................. GTCATCGTGTTCCGTGTCTGATCCTGTGACAC 16873 29 100.0 32 ............................. CCGTGTAGGACATGCGCCGCCCAGTCTTGGGG 16812 29 100.0 32 ............................. CAAGGTTGATTCGGCACTGCTCAAGGCGATGC 16751 29 100.0 32 ............................. GTGGAGGAGGGCCGGGGGATGAGGGAGCGGCT 16690 29 96.6 32 ........G.................... ACGCGTGCCGCTTCGCCGCCGACCTTGCCCGT 16629 29 100.0 32 ............................. CGGCGCGCACGACGCCGAGTTGCAGGCGTACA 16568 29 100.0 32 ............................. CTCTACGAGCTGAGCCCGACCAGCTACGGCGC 16507 29 100.0 32 ............................. GGGCCGACGGTTCACCCCGCGAGGGGTGACGG 16446 29 100.0 32 ............................. TACCGGGGTCCGGCGGCGCACGGTCGTGCCGC 16385 29 96.6 32 ........................A.... TTCCTTCTGGGGCTCGCCGTTGCTGGCGCGGC 16324 29 93.1 32 ..............G.........A.... CGCGCTGGCCGTGCATGAGGATGCCCGTGCGG 16263 29 93.1 32 ..........G.............A.... TCGAGGATGCTGTCCAGTGCGTCGGTGGCGTC 16202 29 79.3 0 ..A............A......CAA.C.. | ========== ====== ====== ====== ============================= ================================ ================== 39 29 98.8 32 GTGCTCTCCGCGCGAGCGGAGGTGGGTCG # Left flank : TCCACCCGCAGTCCGAGAGCCTCGGACACACGCTCGTGCACCTCGGCACCGAGCAGGACATCCCACAGGACCCCGAAAACAGCGGCAGTGTCCAGCAGATGACACACGACCGGATAGGGATGCGGGAGCTCCCGCTCCTTGCCCCAGAACCGGGCATCGAGCGGAACGCATCCGGGCGTTGCCTCTCCGTGATTCGTCATGAGGCAAGGAATAGCAGTCGCCACTGACAATGCGCTCCACTTACCGAAACATGCCAACACGGCGGTGAGGTAGTCGAGTTGGGATAGGACACGGGCCAGCGAATCACCTGTGAGGCGGCTCGACGGACAGCCGGAGTCTGCGGCGAAGCACAGCAGCACGAGATCCAGCGAACTGGCGCCGGACGCGTAGAGTCTCTCCACGTGACCCAGATACTCCTCCCCGTTCACCAGCAGCGGCGTCTGCTCAACCCAGATGACAAAGAAGCGGCAAAGGGTCTCTAGAGTCCCAGGTCGGGAAGG # Right flank : GGGTGAGCCATCGCTCTGACCACCTACAACGCCGCATGAAGAAGCTCCACAAGCCGCATCTCGCACAGCCCCTGCTGACCTGCTTCGTGCACAACGCGAACTCCCGCAGCCACTTACGTCACGAACTCAGCACACTGAATGCGCCCCCCGCCACGATGGCACCAACGCCCCCTCCAGCGACGGTCTGAGCCAGCGTATGAGCGCTCAGGAACACGCGGGACCATGCGATCACCCCCACCAGCGGCACGGCCAGCCAGACCATGGGCCCGTACGCACACGCGAGGATCGCGAGCGAACCGGCCGCGACACTGGTGTGCACCGAGATCTTCCAGAACGCGGTGATCGGCAGAAGCACAGCGAGTGTGGTGAGCATCGCGACGACCAGGGCGAGCATCTGGCGTGGGGCACCGAGCCAGAGCATGGTGCCGATGCCGATGCTGACGGACGCCATGATGACGGGGATCAGGAGAAGGCGTCGTTGGCGGTTGCCGACGTGCCGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGGGTCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28402-31604 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQU01000091.1 Streptomyces kanamyceticus strain NRRL B-2535 B-2535_contig_91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 28402 30 96.7 31 .............................T GGCTCAGGCCCCGGGCGTACTGCCAGGTGTG 28463 30 96.7 31 .............................T ACGTCGTCGCTCTGCGCTTCGCGTCCGTGGA 28524 30 96.7 31 .............................C CCCTACTCGCGCCCCCGGTTTCCTAGGCCAA 28585 30 96.7 31 .............................C GGTCAGCCGCGACCGCATCGCGGTACTCGCC 28646 30 100.0 31 .............................. CGTCGAGGACTGGCACAGATGGCTGGTCTGG 28707 30 100.0 31 .............................. GCTGACCTCGCTGGAGTCAGCGGCCGTGGAG 28768 30 96.7 31 .............................C GGTCGGTGTATGGGCCACCGGCTCACGATGC 28829 30 96.7 31 .............................T TTCGTCGGCAAAGCGCTCAAAGCCTGCGGGA 28890 30 96.7 31 .............................A ACTCGCCGGGCTCCGCGTCATGGTGCAGCAC 28951 30 100.0 31 .............................. CTGGGCTGTTCTCGGCGTGGCCGGACTGGGC 29012 30 96.7 31 .............................T TCAACCCCTGGCGGTGGGACCGGGACAACGG 29073 30 100.0 31 .............................. AACCCCGCCATGAACCCCCCGACCCGTATCG 29134 30 100.0 31 .............................. CCGAGGCCGCCGCGTTGGCCAGCTGTGCGCA 29195 30 96.7 31 .............................T CGTCGACGGGCACGCAGTGGTATTCCGTGCC 29256 30 100.0 31 .............................. GCATCGGGGTGGGCGCCCGCCCCATCGCCGT 29317 30 96.7 31 .............................C TCTCTTCCCACCGCTCCGGCCAGTTCGCCGG 29378 30 100.0 31 .............................. CGCTCGGCGGTGCGGGCTAACTCCCCGACCC 29439 30 96.7 31 .............................A GCCGTCCGCCCTCCTCCACGACCTCCGTCGG 29500 30 96.7 31 ............................C. GTCCCAGAGCCAGCGGGGCGCGTGCCCGGTC 29561 30 96.7 31 .............................C GCTGGTACGGCTCCGGCCTGCGTCCCCGTCC 29622 30 96.7 31 .............................T CGCGGCCGCCGGGGTCGACGTACCCGAGGCC 29683 30 96.7 31 .............................T CGCGGCCGCCGGGGTCGACGTACCCGAGGCC 29744 30 100.0 31 .............................. CGCCCCCGACACCCCAGATTCGCCAGAAAGG 29805 30 96.7 31 .............................T CCGTCCCTACATTGGACCCCGGGGTGATCGA 29866 30 100.0 31 .............................. CGGTCCAGGAGCCCGCGCTTCTTCCCGCCCG 29927 30 100.0 31 .............................. AGATGGACATCAGCTTCGGGCGGGTGCGGCA 29988 30 96.7 31 .............................C GTCTCCCAGACCGCCCGTGGCGGCCCTTACG 30049 30 96.7 31 .............................C TAGCCCTAGTTAGCCCTCACGTCTAGCCCTA 30110 30 100.0 31 .............................. CTCGGTACGGGACGCCGTAGTGCATGGCGGC 30171 30 96.7 31 .............................T CCGGTGCGTTGGTGCTGAACTCGTCGAGGAA 30232 30 100.0 31 .............................. CCCTCAGGGGCCTGGCACGACGCGGGTTGCT 30293 30 96.7 31 .............................C TGGCGGTGTGGGCGTGCGTGAACCTGGTGGC 30354 30 96.7 31 .............................C CGTTCTCCAGCAGGGCCTGCATGAACACGTT 30415 30 100.0 32 .............................. AGCCCCAACCCCCCCCGTAGGGCAGGGGGGTT 30477 30 96.7 31 .............................T CCCAAAGGTGCGGGTCTCCCGCAGGGCGGGC 30538 30 96.7 31 .............................C GCGACCTGGTAGATCAGGCGGATCAGTACTC 30599 30 96.7 31 .............................A TCAGGCCGAGCGTGTCGCCGACCATGGAAGC 30660 30 96.7 31 .............................T CGCTGATCAGCCAGAGGAGTGCGGCCAGGGC 30721 30 96.7 31 .............................C AGCATCACACGCTCCTGACCCGGGCTTTACG 30782 30 96.7 31 .............................A ACGACGAGGGCCGGAAGCTGACGCCCAAGCA 30843 30 100.0 31 .............................. CGAGGTACTCGCCGATGCTCATGCCGCTGAG 30904 30 96.7 31 .............................C GAACCCCCGACCGTTGTATGGGGACCGTACA 30965 30 100.0 31 .............................. GGCAGGGAGGGGACCTCGTCCCAGCGCAGCC 31026 30 96.7 31 .............................A CGGCGTTACCGAGATCATCAGCATGAGTCAG 31087 30 93.3 31 ............T................A CGCTCCAGTACCGGGCGATGCAGAAGTTGGG 31148 30 96.7 31 .............................T CCCGGACGGGGGCGACGCAGGCATGAGCAAG 31209 30 96.7 31 .............................C CGCGCAGGACGAGCACGAGGTGAACGGCACA 31270 30 100.0 31 .............................. TCCACGCCCACCACGTGCTGCTGCGCGCCGC 31331 30 96.7 31 .............................A TCTTGTCCGGCGGCAGCAGACGCCCGGTGTG 31392 30 96.7 31 ................A............. TCCACGCCCACCACGTGCTGCTGCGCGCCGC 31453 30 96.7 31 .............................A AGTACGCGTCCGTCATCCGGCAGATCGACGG 31514 30 93.3 31 ............T................C GGCCGAGGATGGACTTGGCGCACCGCTGTGC 31575 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 53 30 97.6 31 GTGCTCTCCGCGCGAGCGGAGGTGAACCGG # Left flank : GCCCCGCATCGTCACTGACGTGCAGATACTCCTGGACCCCGAAGCCCAACTGGATATCCCAGACCCCGAAGAGCAACTCGTCGACCTCTGGGACCCCATCGCAGGAGCGATCCCCGGCGGCATCAACCACGGAGAGGGCCCATGACCGCCCGGCCGGAGGGACACAGCCCATGGCATCCATGATCGTGCTCTCCGCCACAGCCGTCCCCGACCACCTTCGCGGAGCCCTCTCCCGCTGGCTTCTGGAAGTCACCCCCGAGCTGTACATCGGTACGGTCTCGGCCCGCGTACGCGAGGAACTCTGGGCCTCCGTGACGGCGTGCGCAGACGACGGCACGGCTGTCCTGGCCTACCCGAGCGACAACGAACAGGGCTTCGAACTCCGCACCGCGGGGACGCAGCGCCGCCGCCCGGCGGACTTCGACGGGCTGACCTTGATCGCCTTCCGCCGAGAGAGTAAAGAAGATGCAAACCTCGTCTAACGGTCCAGGTCGGGAAGG # Right flank : GAGGTTCCATGACCGCACAGCACGCGGACGGCGTGCTGTACCGCGGTGACGAGGCGGGCAAACCACCTGGGCGTCGGTGCCGGTTCGATCGATCCTTCGGTGAGATTTTCTCCAGGGAGAGTGGTCCAGCCGGTAGACCGGCATTTCTGTCCGAGCGCTGTTTGCGGAAAGTGGTCCCTGCAATTCGAGGCGGACTGCAAGGTCGCGGGGTGGGACGATCTGCCCGCCGTCGGGCGGGCTCCAGGAGGGAGCTGCTGGCGTCGATCAGGTTCCAGGTCGGAATGAATCCGGCGGTGCCCGAGCGGCGTGATTCTGGCATCAAGCGGCAGCCTGTCCGTGGAGATATTCCGACCCGGCTCAGCCTGGGGCTCTGAATTCGGGCGACGACGCACCCGGAAATGCCTTCATGTGTCACCGACGCATATGCCCACGTGAAGCAAGTCACAGCCGTTGTCCACACGTTGGACGCCCTCGGGTCGGACTGGTGGGGTCGCTGCCGT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //