Array 1 2102-2801 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSMH01000002.1 Escherichia coli strain 71 E20_S11_L001_R1_001_(paired)_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2102 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 2163 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 2224 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 2285 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 2346 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 2407 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 2468 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 2529 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 2590 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 2651 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 2712 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 2773 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGAAGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACTATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGACTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-629 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSMH01000003.1 Escherichia coli strain 71 E20_S11_L001_R1_001_(paired)_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 112 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 173 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 234 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 295 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 356 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 418 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 479 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 540 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 601 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGTGGCTGTGGCTTTGTTTTTTGCTCTGATATATG # Right flank : GAGCCTGACGAGACTACTGAGGCCGTTCTGTCGAGTTCCCCGCGCCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //