Array 1 15836-15479 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYU01000071.1 Clostridium botulinum strain 69285-CD contig_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 15835 30 100.0 35 .............................. TCAGCTTTATTTTCCACCTCGGTTATCTTTTTGCC 15770 30 100.0 36 .............................. AAGCCTTGTTTAATTAGTTCAACCACTCTTGCTTTA 15704 30 100.0 36 .............................. CCGATAACAAATATTTTCGGTGAAAACGGAAGCGGA 15638 30 100.0 36 .............................. GCCATTTCCATTAGGTCTAAAATTTCACCTTTATGA 15572 30 96.7 34 ...............T.............. CAAAAGCTAGATGCTATAGGCAAAAAGTTTGAAA 15508 30 96.7 0 ...................C.......... | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.9 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AACATTTGTTAGTTTCATTTGGCTTATGTTGTTAATAGACGAGCTTACATATAGCTATCATATATACTGTAGAATAAGTGAAATTATAGGACTTACTTCACAAATATATATTTTAATAAAATATATCAAAAAGGTATATATAATATAAAATATATGGTGTAATTTATATTATGTATAAAATGAGGTATATTAATTTTCGTATTATTAGTTTGTATGCTTATAGGAAGTAGTGTTCTTGTTTTATTTAATCCTTTTAGAAAATTTATAAGTATTTTTTTTGGATTTATTTCGTTACTTTTTTCTTTATCCCAAACAAATAAAAAATAAGCCATAGTAAAGAAAAATCTTTACTATGGCTTATTTTAATTAAACGAAAATTATAATCACAACAATATGATTTTCTTAATAGAAATAAACATTCACTCAGTTTTAGTTTCACATTAATTGTGAATTCGACAAGTGCCTGGCACCAATTACTATTACGTGTTTGCGTTCAATTG # Right flank : TTGAATGTGATTTCTATTAATCCCAACCAAGTATTTCTTTTCTAAATCACTCTAATATTATCCCAAACAAATATAAAATAAGCCATAGTAAAGAAAAATCTTTACCATGGCTTATTTTAATCAGTGTTAGTTTCACATTAATTGTGAGGATAAAAAAATGTATAGCCTATATGCATGACTATAAAAAAACTAAAAAACATAATTACATTTAAAAGTGCAAGTAATATTCCTAGTTTCCAATTATATTTAATTAACGTAATTAAAGAAAAAATAAATCCTATAGGACTAACTAAAACTGAAAGCATCCATAAAGGAGTGAGAATGGAACAGAAAGTGGGTATCCATCCTACAATACTTATCAATATACATGAAATTGAAACTATTTTACAAATTTTAAAAAATGTATCATTTGATATTTTAAACATAATTTTCCTCCTAAACTTAATAGTTATTAAGTTTCTTTTGAAAATAATAACTTTTTTCCGAATTAATGTAATTCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 18757-16883 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYU01000071.1 Clostridium botulinum strain 69285-CD contig_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 18756 29 100.0 38 ............................. AATTTAACTGCATTTTCTAAAATGCTTATTCCTTCTAT 18689 29 100.0 36 ............................. TTAGGTACTTGAAGTTTATATATTTTTATTTTTTTC 18624 29 100.0 38 ............................. CTTCAGATTTTCCATCTATGCATATACTAACGTGCTTG 18557 29 100.0 36 ............................. TTTCCATATTGCTTAGATAAATAAACTCTTTCATCT 18492 29 100.0 35 ............................. TGTTGGCAGCTGCTAATTTATACTCACGTCTGAAT 18428 29 100.0 37 ............................. TTAAAAAGAGTATTAAATTCATCTTCAAAATAAAACC 18362 29 100.0 36 ............................. TATATGAGAAAACTTGTAAGTGGTGAATATATGTTG 18297 29 100.0 38 ............................. CTTAAATTACCATGCTCAATCAAACTCATGGTTGCTTG 18230 29 100.0 36 ............................. TTTCAGCAATCTTCTAAAATTAAGCAATCTTTTAAC 18165 29 100.0 36 ............................. ACATTGTTTTAATTTTGTGTCACTCTATTATAATCT 18100 29 100.0 40 ............................. CCAATTGAGCGAATATCACTCTTAGGATAGTTCAGTATTG 18031 29 100.0 37 ............................. GGTCAAGGAAAGACTTATAACATGACACGTCTTGCAC 17965 29 100.0 36 ............................. TGAAATAATCTTTAGCCATACCAGCTATCATCTTGC 17900 29 100.0 36 ............................. AACTAATCGATTGATACGGATGTGTTATTTTTTTGT 17835 29 100.0 37 ............................. TATGGAACTAAATCGGAAGGTAGTCAAAAATATATAG 17769 29 100.0 37 ............................. GCCTACGAAAGTAAAAAAGATGAAGCAAAAGAAATTA 17703 29 100.0 37 ............................. CCAGAGACTATTGACTTTATTTGTTCCAAGTAATCTG 17637 29 100.0 37 ............................. AAAGATAGAGTATTCAGACCAATACCACTTCCTTGAA 17571 29 100.0 37 ............................. GTTGAAATAGCATTTGGATTTGTAGCAGCTAAATCAC 17505 29 100.0 36 ............................. TATTTAACAGAGGAAGAACAACATTTTTTAAACTAT 17440 29 100.0 38 ............................. ACTTGATGTCCAGCTCCACCTAGTCGCATACCCATTGC 17373 29 100.0 37 ............................. TCTTTTAAATCTAATTTTCTATCTACTACTATAATCC 17307 29 100.0 38 ............................. TAAATTTAAATGTTTAACTAAAAAATTATTCAATGCGG 17240 29 100.0 37 ............................. GCAACACTAGCTAATAATAAAGACTTTAAAACTGCAT 17174 29 100.0 36 ............................. GAAAAAAATACAAACTTATAGGTGATAAGCTTCAAA 17109 29 100.0 37 ............................. GGTATAGAAACTGTTTTAAAGATCAAAAAAGCCCTCA 17043 29 100.0 38 ............................. GACTATTGAAATAACTTAGAGGCTCTGTATCAAGCTGA 16976 29 100.0 36 ............................. CCAGAAATGAAATTGTTACATTTATCAATTAAAGAA 16911 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ======================================== ================== 29 29 99.9 37 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : ATCAATATAAGAAACAAATAAATGATATAATTAACAATATTAGAGTTGGATATTACAATGAAAATGCTTGTGAGGAAATGTTGAGTAATGATAACTCTGTTCAAATGATACCTGTTAGTTTGCTAAGTGAATATATTAAATCGAGAGAAGAAAAACGATATATAGAAGGTAATGAGTTGTTTGTGAATTCAAAAAAATATTTATCAGAATATAATAAAAATCTTAGAATTTATATAACAGATCGTGTTTATGATATTAGAGGACTAGTTGAAAAAGAAATAGATATAGATAATCAAATGGTTTAATAATTTTATTTGCAGTGAACCTTCAGTAGTGTTTTTTGTATTTTTTGAAAAAGTGCTTTAAGTATATATATATCAACGATTGTAAAGAGTTATTGCAAAAAATAGCTCACTGCAAAATTGTATGATTTCTTTTCAAATTTTAAGTGTAAAATATGGAGTTGTATAGTAAAACAAAGATATTAAAAGAAAAATGGG # Right flank : CATAGAAAAACCTTCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCNNCAATGAACAAAGCTAATAAAGAAATCATTTGTTCTGGTTGTTGCAGCCATAATCTTTTTAGGTTTGGAAAAGACAAAGAAGGAATAATCACTTTCTTACATTCCCATAGTAGCACATATATATATTCACGACTTTAGTTCAATAATTAATTACTAAACATTTATTATAAGTATCATTGGTATTGTAACTTAATAGGTCATATAACAAAGATATATATTAATATATCTTGAATATATATTAATATATTGGTAAATAAAGGAGAGAAGATATGAGGAAAGTAACGAATATATTGACATCATTAAGTTTGTTTATTTTTTCCATATTAATTTTAATAGATTTTATGATTATAGGGAGTGATATTCCAGTTAACATTCATCGCAATGAAGTTATATTTTTTATTATTCTTAATGTAATATACATATTATTACAAACAGCATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 22070-21708 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYU01000071.1 Clostridium botulinum strain 69285-CD contig_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 22069 29 100.0 39 ............................. CTTACTTATCTTCTAATTCTATAATTCCCATTAATGCAT 22001 29 100.0 38 ............................. TGACATTGCTCCTATCTGGATAATATTATTCTATATAT 21934 29 100.0 38 ............................. CACGGACACAATAATTCTACATCTATATAATATATTTC 21867 29 100.0 36 ............................. TATTGGGAAATGGCTAATTCGCTATTTCCCATGAAA 21802 29 100.0 37 ............................. TATCTAGATTGTGTAGGAGTTCGTACTCTTGGATATG 21736 29 89.7 0 .........................T.GT | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 98.3 38 GTATTAATAGAACTATGTTAGTTATAAAG # Left flank : AAATCTATCTATATTCTCTAAAACTTTAATATTTAACATTTTAATTTC # Right flank : AATCGGTGACAGGGTGGTGTACATATGAGAATTATAACTTGGAATTGTAATGGTGCTTTTAGAAGAAAATCAGCACCAGACACTTGTCAAAATATTGTTCTTCGTTTCGCCATATTTCGGGCGGTGCCTGGCACCGAGAAGATATAATATAATTAGATCATGTTGATATTATTATAGAATTAGATAGGAGAGTTTATGATATGAATTATGAAAATAGTGAGCAAATTGAACAAATACCTGTTTTAATCCAGAAATTATATTCAATAGTAAATGAACTAGAAACATCTTTTAAAGGTAGAAAATTTACTCTTGATGGACATTTAGTTGGAAGCATAGGGGAGGTATTGGTGTCTTATTATTATGATTTAGAATTATTGCCTAATTCAACAAAAACACATGATGCTAAGACAAAGGATAATAAATTAGTTCAAATAAAAGCCACTCAAGGCAAATCTATAGGAATTAGTAGCAAACCTAATTATCTTATTGTTATTAAAATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 749-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYU01000043.1 Clostridium botulinum strain 69285-CD contig_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================== ================== 748 28 79.3 194 A......A..........A.C.-....T. TATTGATTTTGCAGTGAACCTCTAGTAGTGTTTTTGCTAAATAATTAAAACAAGCTTGTAAACTACTTATATCAACGTTTGTATAGATTTACTATAAAAAATGGCTCACTGCAAAATTTAGTGATTTTATGTTAAAAAGGTTATAAAGGATATGAAGTTATATAGTATTATGAAGATAATAGAAGGAAAATGGG A,T [736,744] 524 29 100.0 38 ............................. TTGGAGATAAAGTAAGAATAGCATTAAGTGGTAATAAA 457 29 100.0 37 ............................. TCAGAAGGTGTTATAGAAATAGGTGATAATAATTTTG 391 29 100.0 40 ............................. GTATCTAAATCAATGTTAGATTTGGGACCAGAATGGTTAG 322 29 100.0 36 ............................. CTGTCTTTTATATCACCGTTATTATTAAAAGTAATT 257 29 100.0 36 ............................. TGCACCTTCTAGCAACTTGCTGAGTTGACCCTGAGC 192 29 100.0 36 ............................. ATAGCGGAAGTAACGATTGTCATTCCAACTGTTTTA 127 29 100.0 37 ............................. TACCTTTACACAACCAGAATTTTTATTAAATTTAAAC 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================================================================================================================================================================== ================== 9 29 97.7 57 GTATTAATAGAACTATGTTAGTTATAAAG # Left flank : TATTCTGATATGCTAGTTGGTTTAGGTAATCTTAATATAAATGAAACTGCTAAATTCAATATTAGTGATGAGGCTACAGAATTTAGAGATTATTCTATAAAAGAAGCTGAGGTTTTAGGTGTTGAAGAGGAGCTTTCAAAAGAAGATAAATTTAATAGAATAAAAACTGCTCTACAAGGATTGCAATATTTAAGTCTAAAATCTAACCAATCAAATTATTTAACAGATACTATGCCTAAAGTTGTTATATTGGGTGAATACAAATGGGGAAATAATGTATTTCAAGGATTGATAAATAAAGATGGAGTAAATATAAAAGGTCTTGAGGAAGTAATTGAGGAATATGATAATTTTAGAAATAGTAAGATTTGGATAGGCGTTAGTAATAGAATTTTAAATAAAAACTTTGAAAATGTGAAAGAGGATCTTGAAGAAGCATTTAAGGATTGTGATGATGTTGTAATAGGTAGTGTAAAGAATGCTTTTGATGGATATTTAGA # Right flank : GTTGTATAAAACTTGGGGATGTAGGTTGATTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //