Array 1 15965-11809 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQAF01000022.1 Clostridium botulinum strain P559 Cbot_76_2_contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 15964 29 100.0 37 ............................. GTTAAAGAACAATTACAAGAAGGTGTTGAAGGAAATG 15898 29 100.0 36 ............................. TACCAATTAATAGTAATATCTTGCAAATGTCCTTCA 15833 29 100.0 36 ............................. ATGTTAAGGTTAATTCGACTACCAAAAGTGTCACCA 15768 29 100.0 37 ............................. CTTTCAACAGTTAAGCCAGTTGCAACTTGGGTATTAG 15702 29 100.0 37 ............................. CATTCTAATAATCTGAGTTGGGAAAGTAACGCTGATA 15636 29 100.0 36 ............................. ATTTTAATAAACTTATTGTCAAAGCTATTTGGTTTT 15571 29 100.0 36 ............................. TAGGTTCTTTAAGAAGAAATGTTATAAAACCACTTA 15506 29 100.0 36 ............................. CCAAGATCTATAATTGCTACAGTTTGATTTTTAAAT 15441 29 100.0 36 ............................. TCAAAACCAGTTATTGCATTAGATAAATCATTCATA 15376 29 100.0 36 ............................. ACAAAAGTAGTTAAATAGAAGTAGGGGATTTATTCC 15311 29 100.0 36 ............................. GTGTATAAGATGCACATATGTCTATTATATGTACAT 15246 29 100.0 37 ............................. GATGGAAAACCTGAAAATCAAGCATTACTAAAAGTTC 15180 29 100.0 36 ............................. ATAGCAAAAGGTGCAAATATAAATATGAGTGAATTA 15115 29 100.0 37 ............................. GTAGTAAAGAAAGATTTAGATTCTAAAGGTATAAATC 15049 29 100.0 37 ............................. TTGCAAAAGGTCCACAATTTTCTTTATATTTATTTAA 14983 29 100.0 37 ............................. ATATGCAATTTACCAAAAGTGGTGCTGGAAATATAAA 14917 29 100.0 37 ............................. TTTTTACATATCCATATAACCATTTTCTTTAGCTTGT 14851 29 100.0 37 ............................. TAAATATGAATCTTCTTTTCTTCATGTCTTCCCCTAA 14785 29 100.0 36 ............................. TTTATTCCAGCTGAACTTCCTGAATTGCAATACAGT 14720 29 100.0 36 ............................. ATTGGTAGAGACCCACTTGTGGGCTCATTATTTTTT 14655 29 100.0 36 ............................. TCAAGTTTTAGATACAGTTCCAGAAGGTAACACATG 14590 29 100.0 37 ............................. GGATTCTTCTATGGATTTAAAGCAGATATTTGGGCAG 14524 29 100.0 37 ............................. AAAATAGAGGTGAGAGATATGGATTTTAGCACAATGA 14458 29 100.0 36 ............................. TCAGCTATTGTAGCAACTCTATTTATTTTTATTTCT 14393 29 100.0 37 ............................. ATAGAGCTAAGAAAAAAGAAGAAGAATTAAATTCTAA 14327 29 100.0 36 ............................. GAAGATAAAAAGAAAGAACTAGATAAACAAGACTTT 14262 29 100.0 35 ............................. TACCAATACTCGATACAGGCAAAAATTTTACAAGG 14198 29 100.0 37 ............................. TAGTTGAATCATCTGCATGTGTAGATCCTGAAAATTA 14132 29 100.0 37 ............................. TATGAAGCAGAAGATAAAGATGTTGTTGATGAAATAA 14066 29 100.0 37 ............................. AGTAATTTTAGAACCACTAGACATGGAATGGTGGATC 14000 29 100.0 36 ............................. GTAGGATCTAATGGTTTAATGCTGCCTGAAAAATCT 13935 29 100.0 36 ............................. ATATCTCAAAGTGAACAACCTATACCAGATATAAAC 13870 29 100.0 36 ............................. AGTTCTTTAGCTATTCTTAAAGGTGTTTTGTTCTCC 13805 29 100.0 37 ............................. TTCTTTTTTTATTCTTACGTGCTTGTTGTATTTTACA 13739 29 100.0 35 ............................. GTACCAGTATTATTTATATGTAAGGGCATACCTGA 13675 29 96.6 37 ...................A......... TTGCCACTAATCCAATATAACTAAAATTATTCTGTAG 13609 29 100.0 37 ............................. ATTAACAAATATGCAAATAACAGGAGAACAATACAAG 13543 29 100.0 37 ............................. TATAACATTTTACATCTTTCCTTTCTATTTTAAATTA 13477 29 100.0 36 ............................. TTAGAAAAGCAAAAATATAGATTTGAGTTTGTTGGA 13412 29 100.0 37 ............................. TAGTTACTGTACTCTCTACCTTTTCCTTTTCTAATCC 13346 29 100.0 36 ............................. TGGGTATGGGTTGTTGAATTTGAAAGGTGTGCTACA 13281 29 100.0 37 ............................. AGTGAACCATGTTCCTACTGCTGCAATTATTGTTTTA 13215 29 100.0 37 ............................. ATAAGAGAATCTATACAACCACCTTTTGTGAATATTA 13149 29 100.0 37 ............................. ATGAAGCTGTAAGGGTTGCCAATAATACTACATATGA 13083 29 100.0 37 ............................. ATGATTGACCTGTACGAAAAGTGGAACATGAAAAATT 13017 29 100.0 37 ............................. TGTGCTTTAAACAGATTACTTCTATCATCTATTTTCT 12951 29 100.0 36 ............................. GATAATATGACAGAAGTTTATAACAGAATAGCTAAA 12886 29 100.0 37 ............................. GTGTCATACTCATTTTTTTCTACTAAATCTGTATTCT 12820 29 100.0 37 ............................. TAGATATTAGTGAAAAGAAAATATTAAATATAAGCGT 12754 29 100.0 37 ............................. CAGAATATTGTACAAGATGTTAAAAATTTAAAAGAAC 12688 29 100.0 37 ............................. GGAACATAAACATCTTGACCACCAATTACATCTGGAG 12622 29 96.6 37 ...........................T. TTTTTTTCTCTTTCTTCCTTGAGTGTCATTTTTTACC 12556 29 100.0 36 ............................. TTCCATAAAGGAGAGTGCATTTTACGCTTTAACTCA 12491 29 100.0 36 ............................. AGATAAGATCTAGAAATACCTAATTTTTCAGCCAAG 12426 29 100.0 37 ............................. ATTAAATAAACTAATGTATCCCATTTTTTTAATTTTA 12360 29 100.0 37 ............................. AGAACAAAGAGGACACAATCTATCTTTGCAGAAATTA 12294 29 100.0 37 ............................. CCTAAAATAAAAGTTAATAGGGAAGCTTTGAGTGCAG 12228 29 100.0 36 ............................. TTAAAATCAACCTCTTTTCTTATAATAAATTAAATT 12163 29 100.0 36 ............................. CTGACAGAAGTTCCAGAACCTACAGTTTTAATATAA 12098 29 100.0 36 ............................. ATATTTTTGGATGGAGATTTAAAGATAATAAAAATA 12033 29 100.0 36 ............................. CCGGCAAGCATAGTACCGGCAACTAAAGTAGCTATA 11968 29 100.0 37 ............................. ACCAATAAGTCTTAACAAAATAGGTAAATCAGTCTTT 11902 29 100.0 36 ............................. TTCGAAGAAGACGAAGTTGCTTCTGGCTTGGCTCAA 11837 29 79.3 0 ...............C..AAT..A....G | ========== ====== ====== ====== ============================= ===================================== ================== 64 29 99.6 37 GTTTTAGATTAACTATAAGGAATGTAAAT # Left flank : TTTAATTGAAAATGAAAAATATAAAGCGCTAAAGGCATGGTGGTAAATGATGTTCGTTATAGTAACTTATGATGTAGGTGAAAAAAGAGTTAATAAAGTAAGAAAAAAATTGAAAATGTATTTAACTTGGACACAAAATTCTGTTTTTGAAGGCGAGATAACAAATGCTAAATTAAAAAAATGTTTGTCAGAACTTAGTTTAATATTGGACAAAGAAGGAGATTCACTATATATATATAAAGTGAAAAATAATAATAATATAGAAAAAAATGTTGTTGGAGAGTTAAAAAGTTATGATAATATGTTTTTATAAATATATTTGCAGTAAACCTAATTTTATTAAAATTAGGCGTTAATCGTTGAATTTACAAAGCTGAATAGACATTTTAATATATATTAAAAAATATTACTGTATATTTACTGCAATTTATATCAAGAAATGTTATAATAAGTACTATAAAATGGCTTAGATAGGAACACTATTGCTACTATTTTTCGGG # Right flank : ATTGTAGATGGGCAGAAATATTTAGTTAAGTCAGGTAGAGGTGATGGAAAAGGAAAATCTTCTATATTAGAATTACTTAAACATAGAATTGAGGAGGCAAAGAGATGCTTATTCCAAAATCAAAATTAGAGACTGTAGAATTAATGAATGAGGAACATTATTTAGGAGATCTATCTTATGATTTAGTATGTGATGAATATAGTTTTAAGAAAAATGAAGAGATTGAGGATCTTAGCTTGTATCCTGCTGAATTTTATGGACTATTTACTAGAAAAATTAGAAAAGTTCCAAGTGAAGTAATAAGAGAATTTATTGTTGATAGAATAATACCATACAATAGAATGAATTTAGATTGTTATTTAGAATACTATAATTTAGAATATTGGGATGAATGGGAAGTATTTTTAGCAGCAAAGGGAATGTGTTTTTTAGATACCTTTTGGATAAGAAAAGATAAAAGTGAAAGTTATAAAAATCATATTAGATTTACTAATTCTGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATAAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 568-1058 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQAF01000017.1 Clostridium botulinum strain P559 Cbot_76_2_contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 568 30 100.0 37 .............................. TTTAATTCTTTTATTTGAGCTTTCAACATATCTACTC 635 30 100.0 37 .............................. GACTTAAGTGGGAAGAGCATGGAGTATTTTTTAGGAA 702 30 100.0 35 .............................. CAAAAATTAGTACAAATAATAAACCAATCACAAAA 767 30 100.0 36 .............................. TCAAATGTTTCTAGGGATAATTGATTTTTTATTTAG 833 30 100.0 35 .............................. ATACACTAGAACGTCACAGGGCAGTGTTTTCGCCT 898 30 100.0 36 .............................. AGAATCTGAAAAAGTCTAAAAATTTCAATAAATTCA 964 30 100.0 35 .............................. ACTTATTTGTATGCCTTTATTTGGGATTGTAGATT 1029 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 100.0 36 GATTAACCTTAACATGGGATGTATTTAAAT # Left flank : GTCGGTAGAGCACATGACTTTTAATCATGGTGTCCCGGGTTCGATTCCCGGGTGAGCCACCAAAATATTGTCCAAAGTAGAAATGTGAGTTTTTACTTTGGATTTTTTTTATTTTAGAAGAATAAAATAAAATACAATATTGATTAGATATTTTAGATAATAAAACAATAGCAATAAAAATGGGATTAACAGAAGAAATAGATGCTCTTAGAAAAAAGAAGGTAATTAGTATTTTTTAGAAACACTTAGAATTTAATTATCTTAGTTTTTTTTCTGTACAATTCTATTAAAGTGTATAATTTAAATAGAATAGTAAATATTCTATTTTACCAGCCATAAATTTATATAAAATCCCTTAATCCATTGAAATTACTGGGCTAAGGTTGCCATTGAAAATTTTTATTGAAATTTCACAAACGGTTGGTAAAGTTTCCTTGAAACCTTGAAGTTTCAATGCCTTAGTGGTATTATTGATTTAAGAGAATGGCTATTTTACTGTG # Right flank : TAGAGCATTAGATAGTATTTTTATTGCCTTTGGAGAAGGCTTAACATTAAAACATCCTTATAGCTATAACTTAGTTTTGTAGCTATAAGGATGTTTTTTTACTCTTAATAATGTAACAAAATATGTTATACTTGAAAAAAACAAATTGTAATTTGCATGGGAGAATACAAAAATGAGCAAATTGACTAAATATATTGAAGATTTAAGAAAAAAGTATGGGGATGCAATAGTAACAAAAGAAAGTCATTATGATGATATGATGCTTTTAAAGGTACCTGAGCCATTGAGGGAATTTTATAGGGAATATGAAAGTTTAGAAATGCCTTTTGGAATTATTGACTCTATCGAAATCAGTATAAGATCTTCAGAAGCAGAACCCTTTAAAAGTGAAGGCTGGTTTTCATTTGGTGCAGATAGATATTTTTCCTTCTGGCTATGTGCTTATAAGGAAGATAATTATGGTAATTCCATTATTTCATGGGATCACGATATAGATGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 4754-5236 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQAF01000017.1 Clostridium botulinum strain P559 Cbot_76_2_contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 4754 30 100.0 35 .............................. GAATCACTCATATTAATTTCTTTAGGTATTACATA 4819 30 100.0 34 .............................. TTGATGAAGCACAGTCTAAATTTAATCCTAGAGA 4883 30 100.0 34 .............................. GGAGCAATTAAACTTCCAGCGATTGCTATTGCGT 4947 30 100.0 34 .............................. GCCCAAAAACAAACGTTAATAACAATTACAGTAA 5011 30 100.0 34 .............................. GCCGATATTGTTGATGGTCTTTGTTATGTTGATA 5075 30 100.0 36 .............................. TAAGACTTGTACTATTATCAAGTTGATGTATTTCAT 5141 30 100.0 35 .............................. AGAGCAATTCCTAAATGTTTAGGTCTTAGTATACT 5206 30 86.7 0 .......T.........T.....G.....G | G [5232] ========== ====== ====== ====== ============================== ==================================== ================== 8 30 98.3 35 GTTTAACCTTAACATGAGATGTATTTAAAT # Left flank : AAGGCAGAGAAGAAGGAGAAAAAATTAAGGCGCTAGAAATAGCAAAAAATTTACTAGATATCTTAGATAATAAAACAATAGCAATAAAAACTGGATTAACAGAAGAAGAAATAGATGCTCTTAGAAAAAAAGAAGTTAATTAGTGTTTTTTAAAAACATTTAAGATTTAGTTATCCTTGACAAAGTATCCCATTTAAAGAGTTATAATGATTTTTTTAATTGTTATAGCTCTTTATTTTTCTCCGAAAAATAAAGAGATTAAGCTCAAATTTACTTTAAGAATTGTAAAAATAAAGTAAGTTAGCTATAATATTAAGCATTCTATTTTACCAGCCATAAATTTATATAAAATCCCTTAATCCATTGAAATTACAGCGCTAAAGTGACCTTTTAAAAATTTTCTGAAAATTTTATAAATGGCTGGGAAAGTTTCATTGAAACCTTGAAGTTTCAATGCCTTAATGGTATTATTGATTTTAGAGAATGAGGATTTTACTATG # Right flank : GAAAAGGGCATGCTAATAACTAATAGAATGGCTGCAATGATTGGTTCATTGCAAGAATAAATATTAAAATGTATTATTGAAATTGTTTATATATAATGGGGGAAAAAAATGACTGAAATGCAAATGTGGAATGAATATATTAAAATTAATACTAATGCAAAAGAGTATCAATCATGGTCATTTGGTGGAAATACACCTAAAATGCCAAATTTGTTGGCTGAATTAGTATTAAAGGGGATTAAAACTGCAACTGCTAGTGCATATCCTTGTTATATTTCAGAAAATGCTCCATTACCACCAGTTGGAGGATATAATTTGATATTAAATACAAAAGGTGAGGCTATTTGTATAATAGAAACTACAAAAGTATATACAATACCATTTAACCAAGTTAAGGAGGAGCATGCGTATAAAGAAGGTGAATTTGATCGTACGCTTATATCTTGGAGAAAATGTCATTCTAAATTTTTTTCTATGGAATTAAAAGAGATTGGTCAAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //