Array 1 952-1340 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJU01000014.1 Photorhabdus tasmaniensis strain T327 scaffold_0014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 952 28 100.0 32 ............................ AACTGGGTTAACCCGCCATTATCACTTTCTAT 1012 28 100.0 32 ............................ ATGACACAGATTTATTCCTGCAAAGCCTGAAA 1072 28 100.0 33 ............................ AGATACCAGCTAAGATAAACGACTGGTTTGACC 1133 28 100.0 32 ............................ GCGATTAATTTGAATGTTGAGAAAATAGAAAC 1193 28 100.0 32 ............................ AGTTCGAACTCTACGCGACTCCAGCTTCCCTT 1253 28 100.0 32 ............................ TTATCCACAAATCAAGGGGATAATTTTAACTA 1313 28 82.1 0 .....................GGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 7 28 97.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGCCATGTATCTGTTTGAGTTTTTCCTTGTTCATCCAGTAAGTAATCAGGCAATTTGAAACTGGCGTGAGGATCCAATGTATCGTTTTACCGCCACGGTACTGGGTTTATTTATTGATTAAATAAGATTTCAAAAGAGTAGATCACTGGAGGGAACTCAGTCCGATTTTGACGATCTGATCAATCGTCAAAAATCACCAAACGGACTGCGTTATGCCTATCATAGCATCAATACTCCGAAATGAACGACGTGACACGGAACTACTGTTGTTAATTTATGTGGCAATATTTACACTATTTTAACCCGCAATAACATGGCTTTTCTACGAGTTTATTATAGAAAGGGACCAGAAATAGGATGCTATTTTTGACCCTTTTTTAGTGGTTAATTATAACTCATTGATTTAATTAAGAGATTATCTTGTGCTTGGAAAAAGGGTTTTTCTCCTTTATAGTCGTTTTGCTCTTTAATAATCAATAGATTAAAGTTAATATGCAACA # Right flank : CTCAATTGAGTGCGCTAAAAGGGGAAAAAATCTTGCTTCCTGGCGATATGCATCAATTCTTATGTTTCTGAGCATATTCTTCACTATTAACCCATTGATGGTCTTTTTCCCAGGTAAATAGCCATTTGCGGGTTGGTCCGGCCATGACGTTGAGATAATAATTGTCGTAACCGGCAATGGTTGCTACTGGGTGATAACCTTTAGGAACCATCACGACATCCTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACGCGTTGCATACAGAATCCTTGAGATGGATTCTGGCGGTGGTAGTAGGTTTCCTCCAGATAGGTTTCCTGTGGTTCGTTGTCCATATCGTGTTTATGGCTGGGATAGGAGCTGGTGCAACCTTCATCGGTAAAGACTTCGACCACTAATAAGCTATCAGCCGGTTTGTTATCCGGCAGGATATTGTGAACATAGCGCTGGTTGTAGCCGCGCCCGCGTTTTTCTGCGTCA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 100-727 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJU01000143.1 Photorhabdus tasmaniensis strain T327 scaffold_0143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 100 28 100.0 32 ............................ AGTATTAAAGCCGTTCACGGATATGGTGAAAA 160 28 100.0 32 ............................ CGTAGCGACTTTTAGTTGTTCAAGTGTTATGT 220 28 100.0 32 ............................ TTTTTCATTTGCGGCTACCTCTTAGCGTACAT 280 28 100.0 32 ............................ GTTGCCAGCGGCTTATGTCTATGAATATCCAC 340 28 100.0 32 ............................ GCCAAAGATGATGCAAAAGAGCATAGTTTACA 400 28 100.0 32 ............................ GTCAACTTTCCAAACTAAATTCAACATATCGA 460 28 100.0 32 ............................ ATGGGCAGCAAAAGGCACTCCGACAAGCTTAT 520 28 100.0 32 ............................ AATATGAATATAAGCACTATCCACTCCAATTT 580 28 100.0 32 ............................ TGCTTTTCTGCAAGTTTAAACGGTGCATTCAT 640 28 100.0 32 ............................ ATTGTTGTTAGTGGTATAGGGGAAATGAGAGC 700 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTTATTAAGGGGATTAAACTCTGTTTATAAAAAGGGTTTTTCTCCTTTATAGTGACTTTGCTCTTTAATAATCAATAGATTAAAGTTAATATGCAACAG # Right flank : AAAGGTTAAATTTCTATTCCTTTCCTTGGTTATAAGGGAATAGGGGTACTGATTTATTCTTATCTTAATAACCGCTATTGGATTTGAAATCCGTAAGCCACGAATGGTTTATAGAACTAGCCCCTTATGGAGCTGGTTTTGTTGGTTTTATTAGGACATCAGCAGGAATACCAAACATACCGTGTAAATTCCGGATCATGGATAATATCAGATTACGCTTTCTATTGAGAACTTCATAAACACGGTTGGATTTGCCGATAGCGGGTTCCAAGTCTTTAACTGTTAATCCTGATTGCTCCATTCTGAATTTAATGGCCTCGATCGGGTCTGGTGGGTCGATTGGATAGTGTTCTGCTTCGTATTCTTCAATGAGCAGAACTATCACTTGTGACTGCTCCCCGTCGTAAACCTGTCTTTCCTACACAAATATTTTAACCCGCCCCCTCGTTATTGAACTTTTCCCTCAAAGGTCCGGAGGACGGGCTTTGCTGGCATCTTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 100-549 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJU01000027.1 Photorhabdus tasmaniensis strain T327 scaffold_0027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 100 28 100.0 32 ............................ TCGAATATTCAGACGGGTGGCACTTACATTCC 160 28 100.0 32 ............................ AAACTTGTTCAGCAAAGCGCAGGATGACATCT 220 28 100.0 32 ............................ GCATGTACCAATATTCCGTCAAAAGCCGGTAG 280 28 100.0 32 ............................ TCGTCAACGTATTCATCATCGAATAGATAGGC 340 28 100.0 35 ............................ AATACCTCACTTGCGGCGGCGGCGGGGGGCTCAAA 403 28 100.0 32 ............................ AAGTTTCATTGGTCGGTGCTCGTAATGAAAGA 463 28 100.0 32 ............................ GTGTTTCCCGGTTACTTTTTTCTTAAGGCCAA 523 27 85.7 0 ...............A.....-C...G. | ========== ====== ====== ====== ============================ =================================== ================== 8 28 98.2 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTTATTAAGGGGATTAAACTCTGTTTATAAAAAGGGTTTTTCTCCTTTATAGTGACTTTGCTCTTTAATAATCAATAGATTAAAGTTAATATGCAACAG # Right flank : AGTTTTGCTTTATTAACAAAATTCTCTTTCTCTTATAATCTTGCATCAATAATCTATGTTGAGTTTCTTATCTTAGGAAATAGCTGGGAGATCAAGGATTATATGCCCATAGGAAAATAATTTGGCTTTTCCTAGCAAATGTACTCGATCTCCGTGCAATTCACACACAATGTCCCCACTTCGTTTTGACAATTGACGTGCATATAACCGTTGTTTGTTTAAACGGTTACCCCAAAATGGGGCGAGTACACAATGTGATGAGCCGGTTACTGGATCTTCTGGCACACCTTTAGCGGGTGCAAAATATCGCGAAACAAAGTCAATTTGTTGTTTACCTTGTGCTGTTATAGCAACTCCTGGTAAAGGCAAAGCCGCTATTTTGTCGAAATTAGGTTTTGTATTTAGAACGTGTTCTGCGGTTTCGAGTAAACAAATATAGCGATTATCAGAGACGAGAAGCTCAGATATTTTTTGACCAAGTGCATTCTCAATATCTGCTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1703-2090 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJU01000027.1 Photorhabdus tasmaniensis strain T327 scaffold_0027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1703 28 100.0 32 ............................ ATCGCCAGATGTTCCAAACGCCCAAGGCTACC 1763 28 100.0 32 ............................ TCCGATTAATTTAAATCACTGGGCTACACATA 1823 28 100.0 32 ............................ ATATCCCAGAATTTCACGACCTCTCTCACAAA 1883 28 100.0 32 ............................ GTGCTAATACAATTCCGTTGCGATCAGTTACT 1943 28 100.0 32 ............................ ATCCAGTAGCAAGCATTACTGGACCACGGGTA 2003 28 100.0 32 ............................ TTTATTTCATTGAAGCAAAGATTAGAGTTGCC 2063 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTAGCATGTCCACATAAATCTACTTCAACTTTGGGGGTAAACCAACGTAAGTGATTACTAACTAAAAAGGCCGTTTCGGAGAGATTGACTTCCATAGCAATGGATAATAGAGCTTTATCTGAAAGCCAGTGATCTAATATAACAACAGCGGCGGGATTGCCAGAAAATGGGAGATCTGTAAATGCATCAACATGATAGATGGGAAATGAAGTCATTTGATTCTCTTTTAAACAGAGTTGATTATAGAAAAAGCGTGTCGGTATTCTTCAAAAATTACCGGCTAGTTTGTAGCAACTATATGTAATATATAAAGAAGAGTAAAATAGTTAGTTTTAAGATAGTTGACCAGAGGTAGGATGCTATTTTTGACCCTTTTTTATCAGCTAATGATAACTTATTGATTTATTTAAGAGGTTAGAGTCTGCTTAAAAAAAGGGTTTTTCTCCTTTATAGTCACTTTGCTCTTTAATAATCAATAAATTAAAGTTAATATGCAACA # Right flank : AAAGGTTAAATTTCTATTTCTTTCCTTGGTTATAAGGGATTAGGGGTACTGATTTATTCTTATCTTAATAACCGCTATTGGATTTGAAATCCGTAAGCCACGAATGGTTTATAAAACTAGCCCCTTATGGAGCTGGTTTTGTTGGTTTTATTAGGACATCAGCAGGAATACCAAACATACTGTGTAAATTCCGGATCATGGATAATGTCAGATTACGCTTTCTATTGAGAACTTCATAAACACGGTTGGATTTGCCGATAGTGGGTTCCAAGTCTTTAACTGTTAATCCTGATTGCTCCATTCTGAATTTAATGGCCTCGATCGGGTCTGGTGGGTCGATTGGATAGTGTTCTGCTTCGTATTCTTCAATGAGCAGAACTATCACTTCTAAAAAATCAAACTCAGGTGTTCCAATTTCAGGTTGATTATCAAACAGGGGTGAAATGGCTTCAAGTGCCGCTTTATAGTCTTGTTCTGTTCTAATGGGTTTAATGTTCATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6765-6374 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJU01000032.1 Photorhabdus tasmaniensis strain T327 scaffold_0032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6764 28 100.0 32 ............................ GAACATCATCACCAGATTGTTCCGCAATAAAA 6704 28 100.0 32 ............................ TACGAAATGACCAGGTACTCTACTCATGATTT 6644 28 100.0 32 ............................ AGTTATTACGGCACACCCAGGTCATCACTTTA 6584 28 100.0 32 ............................ GGCCCCACAACTGCATATCCACGATCCCGTCC 6524 28 100.0 33 ............................ GGAATGTCAGGTTGTTTTTTATTAGGATCAACA 6463 28 100.0 32 ............................ TATAAACTTAGAAAAGGGTTTTTTCCAGTAGT 6403 28 96.4 0 ....................T....... | A,A [6378,6381] ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATAAGCCAATAATAGTGAAAAAGAGTAAATTTACGGCAATCGATCACGAGAGGGCTTTACATCTGTCTTGGTGCTGTTTATAGTGCACGCCATTGCGGAGGGGTGGCCGAGCGGCTTAAGGCAGCGGTCTTGAAAACCGCCGATGGGAAACCATCCGAGAGTTCGAATCTCTCCTCCTCCGCCACTTCTTTCTAACCTTATATTTATAAATAATTTTCCTAAGATTCATACCTTACTGTTACACATGGATGTACCACATCATTCCAACGGTGCTGGAGAATTCATTCGTATGTGTACTCATCTTTATCGTCGTGGGCTAATGTATTTTTTCCTATAAATGATGATGTTTTCACAGTACCCTAATTTATACCCTTTTTTTGCATAGAATATTAATATGTTGATTTTAAAGAAGAATAAAATATCTCTTATAAAAAGGGGGTTGTCACTTTCTAACCGTTATGTTCTTTGATAATCAATAGATTACAGTTAATATGTAACT # Right flank : CTCGGAGCTATCCCTGTTCATGAAAAGTGTTATGTAATAATTTAGCAAAGAATTGTAAATTTTTTTTGATTTGCATTTGCAATATTTTACCTTGTGTGAAATTTATGCATAATATTTACCATAAATGAAATTAATTATTTAGGTAATTTTTAAATTATGGATAACAACTTCTCTCCAAGTGATCTTAAAACTATTTTGCATTCTAAACGCTCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTTAATGGTGGCCGTGTTGAATATGTCACTGATGAGGGAAAGCAATCACTGTATTGGAATATCCCGATAGCAAATACCACCGTTATTATGTTGGGGACGGGCACTTCTATTACTCAGGCAGCAATGCGTGAATTCGCCAGAGCGGGTGTTTTAGTCGGTTTTTGTGGTGGTGGAGGAACACCGCTGTTCGCGGCTAATGATGTTGAGGTTGATGTATCTTGGCTGACACCGCAAAGCGAATATCGTCCAACAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 8999-8551 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJU01000032.1 Photorhabdus tasmaniensis strain T327 scaffold_0032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8998 28 100.0 32 ............................ AGAGAGCCTGGAAAATCATGCCCAGGGAGATC 8938 28 100.0 32 ............................ GAGGGGATAGAGACAGCACTGTCATGCAAGCA 8878 28 100.0 32 ............................ TGAATATTAATTTTATCAGCATATCGACCTGA 8818 28 100.0 32 ............................ GGCATTGAAAGCTCATCTGAACAAATGCAATC 8758 28 100.0 32 ............................ TAGCTGGGGGTTGATGTCGGCCTGCAATACGT 8698 28 100.0 32 ............................ GTCTCTTCATCAGCACCCTGCTTAGTGGGTTT 8638 28 100.0 32 ............................ GCTGGCGTTACAACTCCATGTTATTAAAACTC 8578 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTCCTCAGCCTGTTGATATGGTAGATGTATTCCGCAACGCTGAAGCTGCATATGGAATCGCTCAAGAAGCTATAGATATCAAAGCAAAAGTGCTCTGGCTGCAACTTGGTGTTATTAACGAACAAGCGATAAAGTTGGCGGAGGAGGCAGGTCTGGAAGTTGTTATGGATCACTGCCCGAAAATTGAAATCCCAAGATTAGGGCTGGAAAAGTAATATATTTCGGTTTACCCCTGTTCTGTTGTTCATCAATGAGTGAAAGGGGCCTGGTTGATGTCTAAGTTGAACGAATTTAAGGCGCTAGATGGCAAGCGGCGCTTAGATTCTAAATATTGCTATAAGATACCGTGTTTCTACGGACCCTAATTTTGACCCTTTTTTATCGCTAATCAATAACATTTTGATTTTAAAGTAAAATAAATTAGCCCTTATAAAAAGGGTTTTTTCACTTTTTATAACTATACTCTTTGATAGTCAGCCGGTTAGAGGTAATATGCAACA # Right flank : CACAAGAACTGCCTTTCGAGGAATATAAAATGGGTTAATTGCGCAGTCGTGGGGCTAGTAACTGATTACGGATGGATTCTGCTAACTCATCCAGGGAAGGTTGTTCTGGATGGTCATCGGATGCTTCATAGGATAGTTGCGCTTCGGCTAAATAAGTATGTACAGGCTGGCCGTCGTCATCTTCCATCACAACATGATACCAGGGAGCAGAACGCAAGGCTGCATTGGATGCAATGTCATCTTCTTGGGGTTGTTCTAGAGAATATTCCACATCAATATCTACGATGACGCCCAAATAACCCAGAAGCTTGTGACGTACTTGTTGGCCGAGACCGAATTTGCTGGCAATAATCATAGCCACCTCCAAAAAAACCTTGCATTGATACGAATATGAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTAGTTGAAGTCATTTTCTAGCTTTAATAATTGCGAGAGCGACTTCACCTAATTTCAGGTTAGCTGTAGTAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 45048-45495 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJU01000009.1 Photorhabdus tasmaniensis strain T327 scaffold_0009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 45048 28 100.0 32 ............................ AAGAGTTGCTTGCCGCAAAGAATGCTTTGAAT 45108 28 100.0 32 ............................ CAGAAACTCACGCAGAGAAACAGCATTACTGG 45168 28 100.0 32 ............................ TGAATATTGGCAGCTTGGTTTCAGCATCTTTT 45228 28 100.0 32 ............................ GTATCAACGCAACTGGGTCAATCTACGGAAAC 45288 28 100.0 32 ............................ TCTTCAGTGAAGATGCAGCTAAAATATTAACA 45348 28 100.0 32 ............................ CTTTTATTATCATTTTTGGTTGCTTAAAAACG 45408 28 100.0 32 ............................ TGATCAGTTAACGGCACATACGGATTACTTTC 45468 28 89.3 0 ...................A.....G.G | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGTTGCAACCCGCTATTCGCTATATGCAGCGTCAGCAGGGGATGCATCGGATTATGGCTAATTATATGCCTGATAATCATCGTAGTGGTAACTTGTTGGAACGATTGGGCTTTGAGCGTGAAGGATATGCAAAGCAATATCTGATGATAAATGGGATTTGGCAGGATCATGTATTAACTGCACTGACAGATGAAAAATGGAATGGAAAAAGTTGATTATCAGAGATTGTACTGCCAGATAAACCAGGAACTGTCTAACTTTTTGGGGCAGTTCATCTTGGGGCTTTTGCTCATTAATGAACAAATAGATGTAGAGAGAAGGAGGGAAATGTAACTTGAAAGATAGTGTTTCCTTATACCTTATTTTTGACCCTTTTTTTTCAGCTAATTTTAATATATTGTTTTTTAAAGAAATATTATTTCTCTTGTAAAAAAGGGTTTTGTTAATTTTTATCACTCTACTCTTTAAAAGTCAGCAGGTTAAGGTTAGTATCTAACA # Right flank : GGCAATCATGGGTTATACCCGTTACGAAACTGATGTGGTCGCTTGGGCGAATGAGCAAGCAGCATTATTACGTGCAGGTAAATTCTCTGAGATCGATATAGCCAATATTGCTGAGGAGATTGAGGACGTGGGCAAGAGTGAAAAACGTGAACTGGCAAATCGTATGGCGGTTTTGCTGGCCCACCTTCTAAAATGGCAATTCCAGCCTGGGCGTCGTGGTCCAAGTTGGCAGCGAACTATCAAGGAACAGAGAAAAGCATTGGAATTGCATATAAAAGAGACATCTAGCCTGAAAAGTACAATGGCTGATGAAAACTGGTTGGCTAAAGTTTGGGCTGATGCCGTTTCTTCCGCTGCCGACGAAACAGGGCTGGATATGTTCCCGGATGAATGTATCTGGAATATAAATCAGATCTTTTCCCAAGAATTCTATCCTGATTAAGCTTTAGTGAGCTGACTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTTTGTTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //