Array 1 29374-28979 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKI01000017.1 Lentilactobacillus farraginis DSM 18382 = JCM 14108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29373 29 96.6 32 ............................C ATCGTCTACAGGTGATTCCAAGCTGGTTAAGG 29312 29 100.0 32 ............................. ACGGCCCATGTCACTCTTAACTTTGTCACCAT 29251 29 100.0 32 ............................. AGATTTCAATCGATTCTTATCAATGACGTCAT 29190 29 96.6 32 ............................C ACCAAAGTGTTAACCTATGGCAAAGGATCGTT 29129 29 96.6 32 ........T.................... ACCAGCTACACGAAGACAACCGTGGCTGGCGA 29068 29 100.0 32 ............................. ACATAGGAAAGCAGTGATCGCTGTGCTAAATA 29007 29 82.8 0 .................A...AC...TT. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : GTTGGTAGATCAGGCAGCCCACGATAGTTATTCGGATCGAGAGGTTAAAGCGGATATTATCAATGGGGCAACCGATGCTAGCGTCTTCATTAAAAACAATCCTAAAATGGCCGTGGTTGTTTTGGGGCCGGATGCTTGGAAAATGGCACATCAAGTTAATGAATATACCACACTGACCAGCTTTTATGAGACAATTCAAGCTTATCAAAAGATTGCCGAGCGATATTTTAAATAGTTGCGCTTGAATATTTTCGAATTTATGCTGCACAGGTTCGAATCCTGCTTGGGGCACTTAAGCGAATCATGCATAAAGATGATAGAAAGTTTTATCGATTAACGTAAAACATTAACGGTAAAGCTTTTTATTACAGCTTCATTTAAAAAGTTATCGACGGTTTATGCGCTGCATGATAAAATTGAACAGTATCTTAGTAATGCAAACTGATTAAAAACGGCAAATTATGAATTTTGGAATGCCGGTATGTCAAGGATCCTTTAGT # Right flank : TGAAACAATGATTATAAAAAACAAGGACCTATGAAAGGGGAGTGTCTTCCATTTCTGGTCCTTGTTTTTATTAAGCAGACAATATTTTTTAGAAAGCGGGCAATTTGTAAATGGTTGTTACGGTTGTCATATTTTAAAAGCTTTATTAAATTTATTAAGGTTAAACAATTGTAGTGAGGGAGACTTGACCTCACTATATCAACGGATAAGCATTTGCCTTAATCATTTTAACGATATATACTATAACTATAAAATAATTAAGATAATATGTTATTTATTGAAAGGAACGTTGCCTATGATTGACCCTAACGATGAAAAAATCCTCAATCTGATTCAGTCTGATGGTCGTTTATCTGTCAAACGGATTGCTCAAGCGTTATCCTTGAGTGGTCCAGCGGTGTCTCAACGACTAACTAACCTAAAGAATAAAGGCATTATCCGAGGTTATCGTGCTGAAATTGACCTGAATAAATTGGACCTCAGTGTTCGTGCTTTTGTTC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : GTATTCCCCACGCATGTGGGGGTGATCCCA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29647-29496 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKI01000023.1 Lentilactobacillus farraginis DSM 18382 = JCM 14108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29646 29 100.0 32 ............................. TGAAAGATACATTAATCTTATCTCCTGATCAT 29585 29 100.0 32 ............................. TAAGGTGGGGTTCAAAGATGAGGTACCAAATC 29524 29 82.8 0 .....................T.AG.TG. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : GAGAAGGATAAAATTATCTCTATTGGCGCAGTAAAAAAGGCAGAAAACGGTGCCTATAATTGCTTTTATAAATTAATAAGAGATGATCAGAAGATTCCTAAGCAAATAACAGCGTTAACGGCAATTACGTCAGAAATGCTGGAAAAGCAAGGAGTAAACTTAGATCTTGCACTTCAAGAATTAAGAGAATTTGTTAAGGAATCGGTAATTGTTGGGTATAATTTACGATTCGATGAAACCTTTCTTTCACATGGTTTTAGAGAATTAAAGCAATCGGCGCTATCTAATAAGATGTTGGATTTGATGCCCGTGGTTAAAAAGACTGAAAAGTTCCTTGATAATTACAGATTGGCCACAGTTTTAGCAGCATATAATATAAAAAATGAAACGCCTCATAATGCGCTATCAGATGCCAAAGCAACTTTAGATTTAGCGTTCAAACTAATGAAAAACGGCAAATTGCGGATTTAAGAATGGCGGTATAATAGGGATCCTTTAGT # Right flank : ACATCCCTTTCTTGCAGTTTCCTTAGTAGTACAGTTGTTTTGTGTTCAATAAACTTCTATTTCTTGAACGTTTATATGAATAAATAATGAGAAAAGCATGTGTTTCAAAATGCCATTAGCATTTCAAAACACATGTTTTATTTTACGATTCATAATTATTTATCCAACTGTTTTCCTTGATATAACGCATTGCTTACCAGATCAATTGTACTCATCCAAGCAATGTGGCCAAGTGCTTCTGAAATTTGTTCCTCTGATGGAAGATCTTTAGCAGCTGGTGTAAGACCCATCATTGGTAAAACGCCTAAGTGAAAGGCACCCCAGAGGCCTAAGCCAGCCATGGCACCATGGCCCCAACGAACAGGCGGTACCACATGTTGCAAGACGCTGTATCCTACCGCAAAAGTGGTTGAAAAGCCGAAATGAATTAAAAAGCTGACCCATGGCATCTTTTGTTCGGAATAAGTATAGGTAGCGTGGGTGACAGAAGTGGGGACACC # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4385-4171 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKI01000049.1 Lentilactobacillus farraginis DSM 18382 = JCM 14108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4384 29 100.0 32 ............................. TTCTTCAACGGGGTTGTGTAACAAATCCCAAG 4323 29 96.6 32 ............................T CCGCGTTGGTCAGGGAAAAGTTAATCGGAAAA 4262 29 96.6 32 ............................T AACGTCATCCGGAACTGAGACACCAGATTCTT GG [4244] 4199 29 86.2 0 .................A...T...A.T. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTATTCCCCACGCATGTGGGGGTGATCCC # Left flank : CGCAGTTTTTTAGTAATTATTTGGAGAGCAGGTGGTCCAATGTTTCAGGTGATGGATTCGACTACTGCCAGCAAGATAATGAATACCATACTGGTGGTAGTCAGGAGCACACTGTAAATCCATCTTGTAAATCCGTCTTACGAACAATTTCATAGCTGATGGTGTACATCTTTAGCAGTAAGTTTATGTAGCGATACTTAAGTTTGACTGCGTTCACCAAGTTGACATTGTCAATAATGAGCTCGAGTAGTACGCTTGATTTGAATAAGGAGATGTCTTTTCTTAGTTTGTCTGGTCACTATTAAGCATCGGTTTCCATGGCCTACTTGTATGCTTGGCTCAGTATTGCAGCTCAATTTTAAATTCGGCAGCTCCAATTAATAACTTAACGATAATCTATGACTCAATGTGATAAAATTAATAGTGTCTTAGTAATACAAACCAATTAAAAACGATGGGTTACTAATTTTGAAATGCCGGCACATCAAGGATTCTTTAGT # Right flank : GAGGCCGGCTTCCTGCAATGCAGCTAGAAATGGCTCGGTATGACAATGACGCACTTAACCACATGACGGATTATCGATTTATTGAAGCATTGGGGCTTGATGAATCGCTGGTTAGATATATAAGGAGATGATGTGATAAATATTTTAAAGGGAGTTTTTATTAAAAAATATTCTGGGGGTAAGAGAAATGGATGAAGAAACAAAATTTTGCATTAATTGTGAGAAAAAGATACCTAAATCAGCGGAATTTTGTCCTTTTTGTGGTGCAAAACAAGTTGCATCTGATTCAACAAATGATAATGGAACGATCACACTTAAAGGGGCTAATGTCGCTGAACAAAATGAAATTTTTAGATATAACGAAAATAAACACCCGGGTATGTTTACCAGCTTCAAATTATATTTAAAAGATGCTTTTATAATTTCCAAACGAATTGGTCGGGCAGATTATTGGTGGTCTTATTTAACGGTTGCAATTATTCAATTTATCTTTAGCTTGC # Questionable array : NO Score: 3.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //