Array 1 7518-7278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLT01000151.1 Caldibacillus thermoamylovorans strain B4166 NODE_394, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================= ================== 7517 38 100.0 29 ...................................... TGCGTAAAACAGTGAAACCCGCAATCCTT C [7513] 7449 38 97.4 29 ....A................................. TGCTAGTTTGTCCATCAACAATGTGTATC 7382 38 92.1 29 ....A..........TC..................... ACTACATTTTGGACAAACTTGAGTAATTG 7315 38 57.9 0 ..T..CGTCGCACTCT.CAT.....T............ | ========== ====== ====== ====== ====================================== ============================= ================== 4 38 86.8 29 ATCGTGTCGCACTCTATACGGGGTGCGTGGATTGAAAT # Left flank : GCCACAGTCGTCATTTCCGGTCTCGTCCTATACTCAGTGGTCATGCTGCCGCTATTTATTCCGGTCGTCGTCAAAATCTTCGGCAAAGCCAACTGGTGGCCGTTTGTGGGTAAGAAAGATTAGTACTTGGAAAAGAACTTTTGATCAACCGTTAGAAGGAAAGTATATATAGTCATCTCCTTAAGTTTAAATATAACTAATTAAAAACCACCTCAGAAATGTAATTGAGGTGGTTTTTCGATAAATAATGAAAAATCAATGTAGATTCGTTAATATATATTTAAGGAGAAAATAAGTTAATTTGGTTATAGTCCATGGAGGGAAAAGAAAAATGAAAGTGCGAATAGTAAGTGAACATGATTTCATTAGGGGATTCGCACAAAAAATTACTATTAAATTATCCAGTATTTCCCATTAATGTTAATATTTTTTGTTTTGTTCTTTAGCTACCTAAAGGAAATAGTGTATTTCTGTAATTATTTAATAAAAAAATTACAGAA # Right flank : CGTGACGGTCTACCTAAAGACGAAATGGAAATGACTGTCGAACCCTACATAAATTTCACACCAAAGGAACTATAAAATAACACAGGAGATGACAATGATTGTAGCGAAGATAGTAATATAATAAAATATGACTTTTCTGGTGGTGTGGATTGTGAAAAAAATTTTGACATCAAAGAAGGCTGTGTTTGGAGGCTTGTTGTTCTTGCTTATTGGTACATGGGTATTCAGCGAAATGAGCAATCGTTTTTCCATGAAGGGGCAAGAGCCAACTGATGAAGGCTATATTGTTTTTCACAATGGTACGAAATATTTCGTTAAAGGAGAAAATATTACAGCTTCTGACTTGGAAAATTTTTCTGATGAAGATGTTACGATGTTTTCAAAAAAGTTTGAGGAAATAGCGATATTACTAGATGATGGAATGAGACTTTTAGGGACAGGAATTAAAAGTGGTGATCAGGTCGCTATTTGGTATGAAGAAGTCCTTGAATCGTACCCGG # Questionable array : NO Score: 6.39 # Score Detail : 1:0, 2:3, 3:3, 4:0.34, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGTGTCGCACTCTATACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 1 18962-21683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLT01000152.1 Caldibacillus thermoamylovorans strain B4166 NODE_401, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 18962 36 100.0 35 .................................... CATGCAAACGGATTGTTATATAAATCTTCTTGAAC 19033 36 100.0 36 .................................... ATTGTTCCGGCGGCTAATTTGTCTGCGGTAATCGAA 19105 36 100.0 41 .................................... CTTCGCCATCCTCATCCCTTATCAGTTGATTGCCTAGCGTT 19182 36 100.0 37 .................................... ACACAGAAACCAAATGGGAACACGTTTTCGTTAATAA 19255 36 100.0 38 .................................... GACATTAAAAAATTCCAACCAAGCGAGTTATTGAGTGG 19329 36 100.0 34 .................................... TTATGAGCTTAAAAGCTTGTTAGCGACATTAAAC 19399 36 100.0 37 .................................... GTTTTGTTACAGCTTTATTCCTTACTTGATCGACTCT 19472 36 100.0 37 .................................... CAGAACCTATCTCAAGAGGATGCATTCTGGAAAGGAA 19545 36 100.0 40 .................................... CTTATAACAATAATTTAAAAGCAATTTATGACTGTATAGA 19621 36 100.0 36 .................................... TTTTAAGGGACATCAGAAACACTATAAGCTCACTTG 19693 36 100.0 35 .................................... ATAATCGACTTTGCATTTCTATAGTGTCGTTCATC 19764 36 100.0 39 .................................... AAAATGGAACAAGGAACAATAGACGTTTATAAGTATGGA 19839 36 100.0 37 .................................... TTTCAATAAAGCATCAAACTCTTTTTGCATTTTTTCA 19912 36 100.0 37 .................................... ACCGAGTAAGGAATCGTTTAATCAACAAACTTGAAAC 19985 36 100.0 38 .................................... GGTAGTCGGCGGCTAAGTGTCGCAGGGTTAACACCGAT 20059 36 100.0 39 .................................... ACGCTGAACAAAACTCACGAAACCAAAAGTTTATAAAAT 20134 36 100.0 35 .................................... GGAAAGGATTTACTAGATCTCGCAAGAAAGGTAAC 20205 36 100.0 36 .................................... ATTTAGTATATTGTTGTTTTCATTTGCTTTTTTCGC 20277 36 100.0 37 .................................... TTATACCGTAAAAAATTTTGGATTTGATGTCACCGTC 20350 36 100.0 36 .................................... AGAACACAAAAAGCGGAAAAATTGCACTTATTTTCG 20422 36 100.0 36 .................................... AATACTCGTCTACAAACTTTTTCTGCTTTTCTGTTA 20494 36 100.0 38 .................................... CATACAGGACACTTAAACTCTACTTTACGATTTTCAAA 20568 36 97.2 36 ......................T............. GATTTAAAACTTCTTCTGGCATCCAGTACATAGATT 20640 36 97.2 36 ......................T............. GAAAAAACTGTTTCCTTATCACACCTATAGCAATAA 20712 36 97.2 38 ......................T............. TCTAGATATGTTCAAGAAAATATGCAGTCTATCGGTCA 20786 36 97.2 39 ......................T............. GAATCAATTAATCCAATTTGTTGCAACTTAGGTAGAGAG 20861 36 97.2 38 ......................T............. CCGAATTAGCATCGTACCAATTACATCCATATGATGCT 20935 36 97.2 36 ......................T............. TTTTCTATTTTTATATTACTGTTTGTTTGGTGATAA 21007 36 97.2 38 ......................T............. TGAATCTAACCAAGGAAGAAATAAAAGATATTTATAAG 21081 36 97.2 35 ......................T............. AAAAAGGAGTGTTTCAAAATGGCAAATGAAAAAAG 21152 36 97.2 36 ......................T............. AGCTTGGATTGAATCAAACAATGGTGGTCGAGGTTT 21224 36 97.2 36 ......................T............. TTGAGTTGTAATTAATCACCGTTCTACCTGAAAACT 21296 36 97.2 34 ......................T............. TAGATGTTGAAAACGGCGGTTTTGTCTATTATCC 21366 36 97.2 38 ......................T............. AAACCCGCAAAAAATAAGCTGTTGACGAGTCTAGTTAG 21440 36 100.0 39 .................................... TTGTCAATCCTCGAAAATGCCGGGCGGACGGGCTTGCCA 21515 36 97.2 35 ....................A............... CCACCACCGACGGCGTCCACGCCAATTGCCTGCTT 21586 36 100.0 26 .................................... AACAATATAAACGACTACTTTACCGT Deletion [21648] 21648 36 94.4 0 ..T...................T............. | ========== ====== ====== ====== ==================================== ========================================= ================== 38 36 98.9 37 GTCCAAGAAAAAAGAAATGATACGAGGCATTAGCAC # Left flank : CCATCATAAGAATGACCAAGTAATGTTTGTTCACATCGGGCCAGTGAAAGATGGTCAACTATCTAAAAAAATCTCAACAATTGGGAAAGAATTTGTTCCATTGGATTTAAAGCGGCTTATATTTTGAAAAGATATAGCAAAGAAATCTTATGAAAAAAATACAAAAATATATTGTTAAAAAATAGGGAATATTATATAATGGACTTACGAGGTTCTGTCTTTTGGTCAGGACAACCGTCTAGCTATAAGTGCTGCAGGGGTGTGAGAAACTCCTATTGCTGGACGATGTCTCTTTTATTTCTTTTTTCTTGGATCTGAGTACGAGCACCCACATTGGACATTTCGCATGGTGGGTGCTCGTACTATAGGTAAAACAAACCTTTTTAAGAAGAATACAAAAATAACCACAATATTTTTTAAAAGGAATTTTGATGGATTTACATAACCTCTCGCAACATGCTTCTAAAACCCAAGCCCACCATAGCCCAAAACCCCCTGCG # Right flank : CGATGGGATGGGAGAGAGAGGACAGTTCTACTCTTGCTGTATCCAGCTTCTTTTACTTTATCCGGTATCATTTCTTCACTTCTTTCTGCACATAAAAAAGCACCTAACTATTTGGATAAGTTAAGTGCTTTTATTTCCGTTTGAAGTTGTCTATTGCTTTTTTCTTCATATCTTCAAATTTTTTCTGTTTCTCAGAGTCAACTTTACCAACTGTAATCCCTTTTCTTTTTGGCATTGGGGTATCTTTCCACCTTAGTGTGTTCATAAGGCTTATATTTATCACTCATTGTATTCCTCCAACACAATTATAATTTTTCCGTCATCCTCAATCCAACCGTCAACTGTGACAAAAGACGAATCTCTCTTATATAATACTTCTACTTCATTGTCATTAAATCCTTTCAAATCTACTCCGTTTTTTGTATTTATCATTCACGCTAAAAAAAGAAGGTGCTTTGTCTAGTCCTTTCATCGTAGACAAGTACCCTCTTTCATAGGCT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAAGAAAAAAGAAATGATACGAGGCATTAGCAC # Alternate repeat : GTCCAAGAAAAAAGAAATGATATGAGGCATTAGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 72063-73163 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLT01000081.1 Caldibacillus thermoamylovorans strain B4166 NODE_122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 72063 30 93.3 39 ...C.C........................ TCATATATCCTAACCATAAAATCAGAAGTAGCTTGTCGT 72132 30 93.3 35 ...C.C........................ AGCAATAATGCACGGTCTTTTGGCATGTTCAAATC 72197 30 100.0 37 .............................. TCAATATAATCACATATCAACTCACGCAAAAATTCAC 72264 30 100.0 37 .............................. TAAATCTGTACTCATTCATCACACCATTTTTTTCTTT 72331 30 100.0 36 .............................. CAGGGAACAGAAAAACAAGTAGCTTGGGCTAATACA 72397 30 100.0 37 .............................. ACATCAAACCCCTTTGACAATCTTTCTTGCTTTTTAT 72464 30 100.0 38 .............................. TTTTTCACCTCTGGAATAAAACACATTTTCCTCTTTAG 72532 30 100.0 37 .............................. ACTTCTTCAAGTTCCTTCTCTTTCGCCGACAATTCGT 72599 30 100.0 35 .............................. TTTGTATCACGGTTTGCAAATAGAAGGAGACATTA 72664 30 100.0 38 .............................. TCTCTAATATAAGCCATATCAAGCCCTATCTTGATATG 72732 30 100.0 37 .............................. CACAATGGACAATCAATATCCACGTACTCGATCCTAT 72799 30 100.0 36 .............................. AGGGCATGTCTGCCGAAAGTATCTTTATAGTAAATA 72865 30 100.0 36 .............................. GACAGCGGAGAGTACACCAGACACTTTGACGCTGAG 72931 30 96.7 37 .........................A.... TTGACGAGAAATGTCTCGGCGAATACTCGGCGACTCT 72998 30 96.7 38 .....C........................ GTGGGATTCAGAAGCCCTTGAAACGTATGTGGATTCAG 73066 30 93.3 39 .....C................T....... GAGAATCCCAAGAGTGTTTAAAAAGCCTGATGGTGCCTG 73135 29 83.3 0 .....C...-.C.....A..A......... | ========== ====== ====== ====== ============================== ======================================= ================== 17 30 97.4 37 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : GATTCGGTTATCATTTATATGTTCCGCTCCAAGCAGTATACAGGTAGACAAGAGATGGGATTAAAAAAAGGTGGAGAAGAATTTTTACTATAAACCTTTCATTAATAAATGATTTCAGCATTTCTATTAAAAATTGTCTATGTAAACATACTTTAATAGAAGTATGTTGGTTGTTCACTAAGATTTTGATAGAGATGAGTATCTTTAAATTTGGCGGAAAGAACTAAGTTTAAGCGAAAGTATAAACTTAGTTCATCAGTGGAAGGAACGAAATATATTGTGTAGATAGGTTAATAATATCCTTGGACTTTTTGTCGTCGACCCCCAATAGTGCACAAACCCCGGGAGGTCGACGACAGTTATTTTGTAAAATGATAATTGGAGAAATGCTTAAGCCATCTGGGATTAGGAAAATATAATTGCTAAAAAATAAAATTTCTATTATAATTAATGCAAAAGTAACAAGACAAAGAAATCCTATTAAATCAAGGTTTTTTGGG # Right flank : CTTGGGTGGAGTGATTAAGGGAATTTAAAGGAAGTAATAGAAAGCTAGAAAATTAATCAAAAAAGTAATGTTTATATAATTGGAAACTTATTAATATTTTTTCTTTTTTATCGAAAAAGACCTGCCTTGGCTTTAGATATAATATGAAAGATAAGGAAAATAAAATCCTGATTTACGATGACTCCTGTACAGAACGAACAATAGCCATTATTGAAAAATCTTATTATCGTGATTTAAAAATTGCTGAAATAGCTGAAGTATTATTATAAACAGATTCTATCTTTCGTAAATTTTCACAGGAAAATCGGGTTATACATAAAAAATATATAATTGATTTTCGAATTTCACGTTTCGGAGAGTTATTATTTTTTTAAATTGGCCTATAGAGAAGGTTGGTAAATCAGTTGGGTTTAAAAGGTTCGCCTTTCACAAAGTTTTAAAAAAGATTATAGTATGTCTCCAAGTGAAAAAAATTATGGTTAAATGAATGGGGGTCTGCT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7297-7051 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLT01000046.1 Caldibacillus thermoamylovorans strain B4166 NODE_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 7296 36 100.0 29 .................................... TGATGTTTTAGATGGCAATAAAGTTGTAT 7231 36 100.0 30 .................................... TGTTTCAAATTTACCTAAATATTTCATTCC 7165 36 100.0 40 .................................... GTGAATAGGTAATTTTTCGAGATTTCAATCCACGCACCCA 7089 35 86.1 0 ...........-....T.........T..T.....T | TTG,G [7059,7071] ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 96.5 33 GTTTTGGCACTCTTCCAGTTTTGGGTATAGTAAAAC # Left flank : AGCACCTCCTTTGATTGATATGTCAATTTTAACAAGAGGTGCTGTTGATTTATATGCGTTGTTTGAATGGGGGCTTACGAT # Right flank : ATCCCCACATTTGAACATAAGTGGGGATTAAGTATTATTTTCTTTTAAATAACTTTTATGATTTTATCATCTTTATTGCTATCTGTGTTAATTTACTTTTCCTACAACCTCTTGTTTTTCATCTGCCGCATATACAGTCACTTCTTTTTCAATCCCCTGTTTATTTACATACCAATTCGCCGCTCCGACAAACAATCCGCCTCCAACAATATTCCCAAGTGAAACAATGAGCAAATTAAAAGCCGCTCCTGTCAAGGTAATAGTATCCGGGTGAGGGACTGATAAAGAAATAGAAAATAACGCCATGTTGGCAATACTATGCTCATAACCGGAAACAAAGAAAGAAGTGACCGTCATCATGATCAACATAACCTTTGCTGCAAAATTGTCGGTTTGCAACGGGAGCCAAATGGCCAGACAAACAAGCCAGTTACATAGAATACCGCGAAAAAACATTTCCCCTGTCGTTAATCCAATCTTGCCTGTCACCGCACTAAATA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGCACTCTTCCAGTTTTGGGTATAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 29118-30146 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLT01000014.1 Caldibacillus thermoamylovorans strain B4166 NODE_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 29118 30 100.0 35 .............................. GAATATCTTGAAAAAGAGGAAGCTACTCTATCATT 29183 30 100.0 37 .............................. CATAAGCGCAATAGCGCAAATAAAGCACGGAAAGGAG 29250 30 100.0 36 .............................. ACGCGTTTGTGAACATCGTTCACGCCGCACTTTTGC 29316 30 100.0 36 .............................. AGAAAAAGTTCCTACCGATACAGAATCAATACCACT 29382 30 100.0 38 .............................. TTCATTGTCATGTTCATCATATCCATAGACTTGACCAC 29450 30 100.0 36 .............................. TTTTCCGCGTTGCATTGCCACCGTTATGCCCTAGCG 29516 30 100.0 38 .............................. ATTCGGCGTAACTTTCGCGCCGGTCAAAAACGCAATCT 29584 30 100.0 36 .............................. TACTCTTCACGCCCTAAAGCGTCATTGCTATAGATT 29650 30 100.0 36 .............................. TAACAATTTAATTTGGATATTTCTATCTGTATTTTT 29716 30 100.0 37 .............................. TCTCTATGTCGTGCTCTATCTCTACCGTTCCGCTACC 29783 30 100.0 38 .............................. CCGAAATGATAAGCACTAGTTACCATGCCTGCTGTTTT 29851 30 100.0 37 .............................. AAATCCGCGGAAAAATCGTAGAATTATACAGGATGAG 29918 30 100.0 37 .............................. TATTGACGGTCAATACTCTTGGAAAGACAAAAGATAT 29985 30 100.0 35 .............................. TCAGTTGCAATACTCCAATCTGTATCTGATTTGTA 30050 30 100.0 37 .............................. AATCCAATTCATATCCTAAGTTTCCAGCCATGGCTAC 30117 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 100.0 37 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : TTCTCGGTTTTGTTGACTCTTCTGTCCTATTGGTGGTAATGATTGCTGGTTCACCTAATAATTTACCCTATTATTTGAAAGTTTTTATTGGATGTCAGGATGATAGAAGCCTTTTGCATTCATCAGGTGAAAAAAGTTGGATCTCCTGTTGCCCCATCAATAATGACGAGATTAGTATTTGGGATTTTTTTAAAACGTGTATGGAATTTACGAGATATTTCTCTGTTTTTGCGGAATGGACCAGTTCTTTCATTGAGAAAAACATCAGGTTGTATTCTTGACAAAATGTAATTGGACTAGTGGAAAATTTTTGTCGTCGACCTCCAGTAGCGTACAAACCCCGGGGGATCGACGACAAGTTATTTTGTAAAATAACCAATAGAAAATCCCTAGATTACGTGCATTTATGGAAAATATAATTGCTAGAAAACCAAATTTTTATTATAATTAACACAAAACCACCAATACAAAAAACCTTATTAAATCAAGGATTGTTTGGG # Right flank : CTGATCGCTTTTCATTGTTATATTCATCACTCCTTGTTTAAAGCCGGAACAGCAAAGCCATTATCCCCACGAAGAAACAAGGTCGTTTCCGGGAATATTTTGTTATAATGTTCAATTAAAGGTTGAATAAACTCCACCACACCATTCGATGTATAGACATTTCCCGGACGGAGCTGTGCCAAAGTCACCAGTCGCCCCATCAAAAGCGACCAATGGATGAAAACCCATCGTCCTGTAATGGGTATTATATGACGAGGATTCTTGATCCCCATACGTATCTGAATGAGTGGAATCTAAGTTAATAAATAACGACTTTGATTGTCGAGCAAGATGAATTTTATCAAGCAATTCTTGGTTCGCTTGATTTAAATATTCGATTGAATGTTTATCAAATCGGGTATAAAAGCGAGACAGACTAGGCTGGGAAGCGAGTGCTGGCGTTCCAACGATTTTCTTAAATACAGGGTCGTGAGTCAACTGTTCAGCAGTATCATCTTTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 37196-38626 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLT01000014.1 Caldibacillus thermoamylovorans strain B4166 NODE_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 37196 30 100.0 36 .............................. ACAAAATCCGCTATCGGCTGTCCTGTTTGGTAGTGC 37262 30 100.0 38 .............................. TTTCACAACATGAGTCAGCGTAATTTGTGTATATTTCC 37330 30 100.0 38 .............................. GTTCATCAGATTGACTCATAGCCGGCGTTGTAAAGGTC 37398 30 100.0 36 .............................. TTCACTGCTGTGGTGATTTTTCCGTTTGCTTCAGTT 37464 30 100.0 37 .............................. AACCCATCAAATTCCGATACGTGTACATCATGTATCC 37531 30 100.0 35 .............................. TGCGGAATCACTACCGACCCGTTGCTTTTGTGCAT 37596 30 100.0 37 .............................. TAGGGAACCCCCTGCTAACGCAGGCACCCCCTTTCAC 37663 30 100.0 38 .............................. TCATTTCTCTTGGTTTATTCATTACCTAACAACCCCCA 37731 30 100.0 37 .............................. TATGGCAGGTATTGACGCCAAGACTGCCTGCCAAAGC 37798 30 100.0 38 .............................. GCAAGTTTGCTAAAGATTTTTACACCAATTCCAATCGC 37866 30 100.0 37 .............................. ATCATAATAGAGCACTTCTACTCCTAGTGGACTATTT 37933 30 100.0 37 .............................. GGTGCAAGTGTCCTTTCTGCAAAGAAGACGCCAACAA 38000 30 100.0 37 .............................. ACCGGTTCATTGTTAATGTAAACTGTTGGCTTCGAAC 38067 30 100.0 36 .............................. AAAGACGTATTCGGCGAGATAGCAAAGACGAAAATT 38133 30 100.0 37 .............................. TCCAAAGACTATCTCCACATTCCGTACAAAAAGCATT 38200 30 100.0 36 .............................. CGTCTTAAGCGGTGGAATAAGGAAGTTTGAACACGG 38266 30 100.0 35 .............................. GAAAGAGAAATAAAAAAAGCAAAATCAAATAATCC 38331 30 100.0 36 .............................. TGTAGTTCATGCTTGTTATGCCCTCCTTCCCTCTTA 38397 30 100.0 37 .............................. AAGTTTTTGGACGTAAACAAATTGTTGTTTTTGATGT 38464 30 100.0 37 .............................. AATCCAATTCATATCCTAAGTTTCCAGCCATGGCTAC 38531 30 96.7 36 .....A........................ CCAGATAGACAAGAATTTCTAAAGACTGTTTATGCA 38597 30 93.3 0 .......A....................G. | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 99.5 37 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : GCATAATTTGAGTTTTATAGGAATTGGCTCTTTTGGTCCTATTGATATTAATAAAAATTCAAAGAAATATGGTTTTATAACAACTACACCTAAAAAGGGGTGGAATAATTTTAATTTTTTAGGTGTAATGAAAGAACGATACAGTGTACCTATCGCATGGACGACTGATGTAAATGCTGCGACATATGGAGAATATAAAAAAGGAAATGGAAAAGTTAGAACGAGTGTTTTGGTATCGGAATCGGGGGTGGGGCAATTATTAATATCAGGATATTAGAAGGATTTGGTCACCCAGAGACAATACATATTTTTGTCGTCGACCTCCAATAGCGTAAAAACCCCGGGGGATCGACGACAAGTTATTTTGTAAAAAAATCAATAGAAAATGCTTAAATTACGTGTATTTATGAAAAATATAATTGCTAGAAAACCAAATTTTTATTATAATTAACACAAGACCACCAATACAAAAAACCTTATTAAATCAAGGATTGTTTGGG # Right flank : CTGCTTGAGCAAGATATTCTCGAATCACGGATATGGTTAAAGTTGCCAAGAGCATATAGAACTGAGGTCACTGATAACAAGGTTCACACCCATATAAGATGGTTGACCACAAAGAACCACTTGAATATAGGTACTTTGCCAAACTATTTCATAATATTATTATACGTTTCATAAAAGAAAGACATTAATGGTTCAATGATGCCTTCATTAATATGATTATTTCCTGAACTGGCAATGATTTTATGAAACTCTTTATCTAATTCATCATAATTGTCAACATTATTTCTCATCGCATCTATCGACTTTTTTAAACTTTTCAGTTCAGTTTTTGTTATTTTTTCTGCTGCTAATGTGACAAATCCGAGTTCCTGTGCCATTCGTGTTTCCATTAGAATATTTATATCCGTTGCAGTAATAGCATCAAATGATATGGGCGCGTACCTATTTTATGAGATATAAAGGTCCCTTCTTTTGTTCTTCTTTCAATCACTCCTAATGTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //