Array 1 889-2227 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAAKT010000080.1 Emticicia sp. ODNR4P ODNR4P_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 889 37 100.0 39 ..................................... TTATTGATCTAAGGTCTTTATTTAACCTGTAGTCTTCAA 965 37 100.0 41 ..................................... CTGTCAAAGGCTTAGCCTTTAACATTTGTTTCATTTCAAGA 1043 37 100.0 37 ..................................... TGAAATTAAAATAATTTAACACTAATTGTTCTAAGGT 1117 37 100.0 41 ..................................... ATACTGACATACTGACATACAAAGATACTGACATTGACAAA 1195 37 100.0 41 ..................................... CAATTGAAGGTTCGTTTATCTCTTCTACTTTTGATAATTGT 1273 37 100.0 42 ..................................... TCCAAGCTGATTTTGTGATGTTTGAGCGGTTGAAAGTAGTTG 1352 37 100.0 40 ..................................... AGGAAGCTCTACCTCAAGCCCTGTTTTCTTTGAGATAGTC 1429 37 100.0 37 ..................................... CAACTTGTTTGCCTCAGTTGAAAATGTTTTCTTTACT 1503 37 100.0 41 ..................................... CCGACAAATGAAACTATAGCAATTAAAGCACCGAAATAAAA 1581 37 100.0 39 ..................................... GTTTCTGAAGCGCAATTTCCACTTTAGCTGGTTGCACGC 1657 37 100.0 42 ..................................... ACAATGTTAAGAATGTATCTATGATTTGGCTGAATCCCTAAA 1736 37 100.0 38 ..................................... TTCGTCAACCTTGACACCGTCAATGATGACATTAAACA 1811 37 100.0 38 ..................................... TCGTAATAATCAGAAACACCTACAGCTTCGAAGTCAGT 1886 37 100.0 38 ..................................... TTCAATCGAGCAGAGCTAGCATGATGAAATACAGGAAT 1961 37 100.0 41 ..................................... ACATATAAAATACCTACCAGCAGGTAATTTAGGGAAATTAA 2039 37 100.0 40 ..................................... ACTTCCTTTATTTAGAGAATTTAATCTTTCTCTTGAAATA 2116 37 100.0 37 ..................................... TGACCTTGGTCAATGAGGTTTAGTGCAACACGCTGGT 2190 37 86.5 0 ........................T.T......C.CT | G [2221] ========== ====== ====== ====== ===================================== ========================================== ================== 18 37 99.2 40 GTCAGAATGGTACTTCCACAAAAACAAGGATTAAGAC # Left flank : CAAGTGACAACAAAAAGGTAAATTGGGTACAAGCCTTGGCATTACCGCAAGGAACGCTTGCTAATTGGATGGAAAGCTATGAAGGTACGATAAAGTTCACAAAAGGAGGTTTTGGTTTTGTAGATAATATATACATAGCTAGCCAGCTTTTGAAGGAACGGAACATAACGCAAGTACAAACTGTAAAAGGCACAGCGGTAAAGGTGTATGATCCTGTAAAAAAGCAACTCGGCAAAAAGGCTCTAACAGTAGAGATATGCTAGCGTATAGTTGGGTCGTGGTGATTGTGTAATCGGTACTTGAAAAGGTACCGATTTTTTATTTTTAAAAGCCTAGCATAGCCTTAGAACTTAGGATAAAGTTTTGTATTTTTGAAAAGTCTATATCGCTCTGACAAAAATTAGGAACATTTTCGATATAATAAATCAATGATACGATATAAAATTTCAAATATTTTTAGTGTTAACACATTGATTAATAAGATATTAGCAAATGGGTCT # Right flank : TAGAACTTTAGAGGTAAAAAGGTTAGATAGTTGAATTAGATAGGAAGTTGTATTATTCATAGTTTGGCTAGTTATCAAATAAGGAAATCCATCCGTATTTGAGTGGATTTTTCGTAGGCCTTTGCTGGAAAAAGTAATTTTCAAGAGATGCCAATTTATAACTTGGGTTGTACTAAGGATTTATAAAAACATTTATCTCAGAAACCCAACATCCAATATAAACAGTCTTTAAGTTCCTTCATACAGCACTAATTTTATGCCCTTGATTGCTCTACTTTAGGGTTATTAAAAGCTTCGATTGCGTCATTTTGATCATAGTAGATTTTGTAATCTTCCTCGTTTAATTCTAAACCACTTCCACAATTGAATAAACGACTCCACGCATTGTGCAATCCACAAAAATGAATTATTGGCTTGGGTGTATTACTAGAATGTCTAAATGATTTAAACCCATCAAGTACTCCACTTCCTACGATAGTTACAGCACGCATATCAATAAC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATGGTACTTCCACAAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 94482-95433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAAKT010000009.1 Emticicia sp. ODNR4P ODNR4P_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 94482 30 100.0 37 .............................. TCATTTGCCCACTTCTTAGGGATTTGTGGAGCTTTTC 94549 30 100.0 36 .............................. AGGTAAACCATCTGCATTTTTTGACTCAATCACTTC 94615 30 100.0 35 .............................. GTTATTAATTTTCTTGGTTTTGAATATTTTGTATA 94680 30 100.0 36 .............................. TCCTCAAATCCATTCGCATCTGCCCCTAAATAAGGA 94746 30 100.0 37 .............................. GATATCGTAGCAGAACGCCCAAAAGAAATATCGCATT 94813 30 100.0 39 .............................. TACTGGTATTATCTTTCAAATCGTTGTAGATGATCTCCA 94882 30 100.0 37 .............................. TAAGCTCTCCAAACGGTTGCCCAACCTTGGTCAACCT 94949 30 100.0 37 .............................. AAAGAAAATCTTTGTACAACACTCGTACTACGATTAA 95016 30 100.0 39 .............................. ATCTTCAAGGGCCAAGAACCCGTTGAGTTTAAGGTTGAG 95085 30 100.0 38 .............................. TTAGCGATAGCTTGAGCCTTCAGTTGTGTAATTGTCAG 95153 30 100.0 37 .............................. TCTCCTCGGCCATTCAGAGCTTCAGCTCCTGGTTCAT 95220 30 100.0 36 .............................. TTTAAAAACCACCATACAACAGTACAAAGAAAAACC 95286 30 100.0 36 .............................. AAGATCTTTCTTAGACAGATTTTAACCTTATCTAAA 95352 30 83.3 21 .............T.CAC...........T GAAGTTTACACTTGGGCTTGC Deletion [95403] 95403 30 73.3 0 TGCA..........T...C......A...A | G [95423] ========== ====== ====== ====== ============================== ======================================= ================== 15 30 97.1 36 CTTTTAATCGTACCATTTAGGAATTGAAAC # Left flank : GAAATTAAAACTTTGATTGATATGTATGTTATTTTGGTATATGATATGGGAGAAAAACGAGTAAGCAAAATGATGAAGCATTGCCGAAAGTATTTAAACTGGATTCAAAATTCGGTATTTGAGGGGGAAATTACGGAGGTAAAGTTGAAGGAGTTAGAGATAGGTGCACGAAAAATCATGAATGAAAATGAAGATAGTTTGATTATCTTTAAGAGCAGGAATGAGCGTTGGCTTGACAAGCAAGTGATAGGAGTAGAGCGTATGAGCACGGATAATTTTTTATGACGTATAATGATATACGCAAGTCGTCGAGTCTTATAAAGTTCATTGAAATACTGAAATTTTATAAATCAAAGATAGAGATTTTTGAGCTAAGTTTCTGATAATCAATAGTCGTCGATGTACGGGGTAAATCCTATCATTACACATCGACGATTTTTTTCTAGTTTTTTCGAGGAAAAAAGTGTTATTTTATCAAATCAAGGCCATTTTTCAAACGG # Right flank : AAGCCCCGCAGACTTGGTTCCCTCTGGTCGTTTGCGGGGATTAATTTTTACTCTGATTTAAAATTGCTTACATTTTCATGTATAGCGGGGCGGTCTGTGATTTTGAGGGCTTTTACTTTTTTGAGTCGGACGTTCTCTATCGGTAATTCTTTTTGCCCTAATATTCTTGAAATAAACTTGACTTCTGACGCTTGAACGTTATTCAAAAATACATTTTTGATAGGGGTAAGCCTTTTTTCGAAGGTCTGTACTAAATTTCGCCACTGATACAATACGTCGGTTTCGATGCCTAATACGCCTTGGTCGATTTTTCCTGATTTTACGTTTTCTACATAAATGTGATTGACATATCCACCCATTCTTTCATTGGTCTTGATAAATAACAAATGAAATAGCTTCGCGCCGTCTACTACTTCACAGTTTTGAATCCACACATTTTCGATTCCTCCTGATAATTCACTGCCTATGGCTACTAGTTGATGTCCGTTTTTGACCAAACA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGTACCATTTAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //