Array 1 10805-6867 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNTY01000011.1 Alkanindiges illinoisensis strain NFYY 23406 NODE_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 10804 32 100.0 35 ................................ ATCTTGCCATTGCCACCAAACAGCTTGGCTAAGCC 10737 32 100.0 32 ................................ CATCATTCCAGACCAAAGTGCCTTTATCATTT 10673 32 100.0 33 ................................ TGGCATTGTTGGGGGGGTTCACCCCAGTGGCAC 10608 32 100.0 32 ................................ ATTTTGTGTTGATGAAATGGAATGGCTGGATA 10544 32 100.0 34 ................................ CGGCTGGCTGACGTGATTGTCGTGCATCATACCG 10478 32 100.0 33 ................................ TACGATATTGTCACTCGATACAATTGGGGCGCC 10413 32 100.0 34 ................................ AAAACTGAATGTTCCACCGCCAGTTATCAAAACA 10347 32 100.0 33 ................................ GAGCAAGTAGTTTTGTCGGCCAGCCGCACGACC 10282 32 100.0 34 ................................ TGATTCAGCCAGATCACTACATGGCACAGGCAAA 10216 32 100.0 35 ................................ TGGCAATACAATCACATTAAGAGTGCCTTGGGCAG 10149 32 100.0 31 ................................ ACCAAAGCCCGACGACGTGTATAACGCTGGC 10086 32 100.0 34 ................................ CATGTAGCGAAAGCCACCAGATTCATGCGCCAGT 10020 32 100.0 33 ................................ TGCTGTACCAGTACCCAAGCCAACCCCGAAAGC 9955 32 100.0 33 ................................ TTATAATCCACCCGGTCCCACGTTAAATTAATA 9890 32 100.0 32 ................................ ATCAAGACGAGGCTGGATAACAACCTGTGGAT 9826 32 100.0 32 ................................ CGTAAACCTGACCAGATTATCCAGCCTTGGAT 9762 32 100.0 33 ................................ TAGCTTTAACTGACCATAAGCCGCTGTATGGGC 9697 32 100.0 34 ................................ ATTGTCAGAAGCTGCGGCATTAGCAGTTGATAGT 9631 32 100.0 32 ................................ AGGCTGTCCTGTGCGTATTTCATGCCGCGCAC 9567 32 100.0 32 ................................ TTAAATGTGGCTATCAAGCTAGAGGAAATGAT 9503 32 100.0 34 ................................ CTGCTGAAGCATTCCAGATCAGTACCACTGGCAA 9437 32 100.0 34 ................................ AGCAGGTCTGGTGCGGGTTTGCCGTCTTTAGAGA 9371 32 100.0 35 ................................ ATTTTATAAATACATGGTTTGGCTCTGGGCGCAAG 9304 32 100.0 33 ................................ GATTAAGGGGGTTTTATGGCCGTTGCAGAACAA 9239 32 100.0 31 ................................ TGATAGCTGGCTGGCGTATCAGAACGAATTT 9176 32 100.0 33 ................................ CGTGCTGGTGGACGAGAACGATCAAGACACGGT 9111 32 100.0 33 ................................ TGCTCAGTCAGTCGGTCACTGGAGCGTGCTATA 9046 32 100.0 31 ................................ ACCCTGGATCAAAGCTTTGTAAACGTCCACA 8983 32 100.0 35 ................................ TCACTCGTTTAGCTAAACGCGCCGCATAGGCGCAA 8916 32 100.0 34 ................................ GATGATGGCAGCGCGCTGGTTGCTGATGATGTGC 8850 32 100.0 41 ................................ CTGAATGACGACCTATGGCAGAAGCGCACTGACGTTAAACC 8777 32 100.0 32 ................................ AATAATGGCCATAGCCTTGTCATAATCAGCAT 8713 32 100.0 32 ................................ GTGGCCATCACCAACACTCAACATACGACTGG 8649 32 100.0 32 ................................ CAACTTGGAGGATGATAAGGCAACAGCGGATA 8585 32 100.0 39 ................................ CAGATGGTGAACTGGCAAGCCTGGGCAATCCGCAGTCAT 8514 32 100.0 32 ................................ CTTGATAATGGTGCCATCCGGCATACGCACGA 8450 32 100.0 33 ................................ AGATCAAGAGAGCATACAGGCATCTGTGATGTT 8385 32 100.0 34 ................................ TTTTGCTACGTTTATCCGCACAAATCCTACAACA 8319 32 100.0 32 ................................ CTGCGCTTGCCACCGTTCGGGCTGTGGTGCAG 8255 32 100.0 33 ................................ TGGTGCTATGTGCCATTGGGCGGCTTTCATGGC 8190 32 100.0 32 ................................ CCGCACTTTTGGCGAGCGTGATTATTTTAAAA 8126 32 100.0 32 ................................ CTGACTACTCTTTGCTTGTCCTACTCGTCATT 8062 32 100.0 32 ................................ ATATCAAACCCCTGTAAGCAGCCATAAAGAAC 7998 32 100.0 34 ................................ AACAGCGGGCTTTTGCTCGCTATTGATGACAAAC 7932 32 100.0 33 ................................ GCTGGTGAGTGTTGGTGCTTGCGGGGATTGCTC 7867 32 100.0 33 ................................ ATTTCACTATCAAGCTTGGCCATTGCTACTCTT 7802 32 100.0 32 ................................ AGGTGCACTGGGCAAATTAATGGTTGTATCAA 7738 32 100.0 32 ................................ CCGTAGCACTTCACCAACATGAGGTGGATTAA 7674 32 100.0 32 ................................ TTAGCTTTGGACTTTGTATCAGTAATTGGATT 7610 32 100.0 34 ................................ AGCATCTGACATTTGTTTGCCAGTACCACCAGCA 7544 32 100.0 32 ................................ ACACATCGCCCCTGAATACCAAGTGGGGCGCT 7480 32 100.0 33 ................................ CTATCAGTATAGGGCGCACAAATGCCACTTACA 7415 32 100.0 33 ................................ ATTGCCAGATTTTCCGCGCATGATCTGGGATTT 7350 32 100.0 33 ................................ ACGACAGCCTGGCAATAAATCTTCAAAAAATAA 7285 32 100.0 33 ................................ ATTTTGGTGAAGCTGAAATTACTAACTTTGACA 7220 32 100.0 34 ................................ ACCATCTGGTCAAATTGCTGCATGATTGCATCAT 7154 32 93.8 32 .........C..G................... AGGATGCAATCTATACCCAGCCTTAACCTCAT 7090 32 93.8 32 .........C..G................... ATAAAACGCCCACTATAGAAATACTTATACTA 7026 32 93.8 32 .........C..G................... AGAAGTTGCGACACTTGTAGATTTTATTAGTC 6962 32 93.8 32 .........C..G................... ATAAAGTCAGGTAATTCAGGCTCAGACTGCAT 6898 32 93.8 0 .........C..G................... | ========== ====== ====== ====== ================================ ========================================= ================== 61 32 99.5 33 GTCGCACCTTATACAGGTGCGTGGATTGAAAC # Left flank : GAGAATGCTGTAATGATGGTACTGGTCACTTATGATGTGAGCTTAAAAGATAGTGAAACAGGGGCAAAGCGCCTACGTAAAATTGCAAAATTATGTCGCGATTATGGCCAGCGGGTGCAATACTCAGTATTTGAAATTGAGGTTGACCCTGCTCAATGGGTGAGCCTTAAAAGTCGGTTACTCAACGTCATGGATGAATCCTTAGATAGCCTGCGGTTCTACTACCTAGGCAGCAACTGGGAGCATCGGGTTGAACATATTGGGGCAAAACCAGCATTTGACTTAAACGGCCCACTTATTTTTTAAGCAGGTAAATAGCAGTGCGCGAATCCTAAGCGGGCATAAAATTGCTAGGGTTTTCGCAAATCGGTTAAGTGTTTGAAATCATTATCGTTATGGGGGAATATTTTTACTTTATGATTAGCTTTGCATTTCCAATCTCTACTATTCGCAAAAATTGCAGTTTTTTGCCTTTGCTATTAGTAGGTTAAGAGAATGCT # Right flank : TGTAGGGTTCGCTACTGTCAGGTTTGTTATTACTAATGCAAGCTACTAAAACCAGGCCTTACCCAAAATGGGCATCACCACGGGTTCACAGCCAGCAGCCCGGATTTCCTCAATCATGCCCGGCATATCGACTTGTGGCAGCAGGTCTGGCGTGTCATGGATGGGTGTAACCATGCTGTCCCAGTGGCAGGGAATAATCCACTTGGGTTGCAGCAAGCGCACCACATCCTTCACATAATTGGGGCGATAATGGCGACCAATCGCACACAGGCATACAATATCGGCTTGCATACCTGCCAGTTCAGATTCAATGAAATCGGCAGAATCAATATGCACCACTTTAAGATTGCCCGTATCCACCAGCCAGTTTAAAACCAGTCCATGCTTAAGCTGGTAAAAGCGTGGCGGCCACGGCGGTGGCTCGTTCATGTCGCCCGGCAGTGGAATCCGGCCAAACGCAGCCTTGCCATGGATGGATGGCAGGCCACGAACCTGCCAGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATACAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //