Array 1 367778-368843 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESX010000002.1 Salmonella sp. 32020301-2015-00098-FB-01-SM-01 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 367778 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 367839 29 96.6 32 ...............A............. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 367900 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 367961 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 368022 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 368083 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 368144 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 368205 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 368266 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 368328 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 368389 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 368450 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 368511 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 368572 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 368633 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 368694 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 368755 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 368816 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 384976-386391 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESX010000002.1 Salmonella sp. 32020301-2015-00098-FB-01-SM-01 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 384976 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 385037 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 385099 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 385160 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 385221 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 385282 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 385343 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 385404 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 385465 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 385526 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 385587 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 385648 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 385710 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 385771 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [385813] 385813 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 385874 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 385935 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 385996 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 386057 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 386118 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 386179 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 386240 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 386301 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 386362 29 96.6 0 A............................ | A [386388] ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //