Array 1 166039-165602 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPHN01000005.1 Enterococcus sp. BSD2780061688st2 D3 strain BSD2780061688st2_D3 NODE_5_length_183938_cov_38.6517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 166038 36 100.0 30 .................................... ATGATGTTCAGGTTTACCCTCAAACTCATT 165972 36 100.0 30 .................................... TCAGAGGTGAAGTCAGACACTTTGACAGCT 165906 36 100.0 30 .................................... CATTCTCTATTCAGATTTTGTAGGTATGCA 165840 36 100.0 30 .................................... CATTCTCTATTCAGATTTTGTAGGTATGCA ATCGA [165824] 165769 36 100.0 30 .................................... AAATTGCTGCAGATCATGAATTATCAGCGA 165703 36 100.0 30 .................................... AAGGAGTTTTATAAATCGTGAACAAAAAAA 165637 36 91.7 0 ..........................T......GT. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.8 30 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : AGAAGCAAACCGAAAGATCATGGTAAAGGAAACCAAATCGAAGGACGTATTTTTGAAGGGCAAAAAATGGTCGTGATCGAAGATCTGATTTCAACTGGCGGAAGTGTACTAGAAGCAGCAGAAGCCGCTAAACGTGAAGGGGCGAATGTCTTAGGTGTGGCTGCTATCTTCATATATGAATTACCAAAAGGAAAAGCAAACTTTACTAATGCGGAAATGCCATTATTGACCCTTACGAATTATTCAGTGCTGATCGAAGCAGCACTAGAAGAAAAATACATTGATGAAACAGAATTAAACCTATTGAAGGAATGGAAACAAGATCCTGAAAACTGGAAGAAAAACTGATTGCTTAACATCTGTAAAAAATATTTTAGCATCAGAAATAAAATGGTATACTAGTGTTGAATAAACAACAAATAAAGAAGTATTCAAGACGAAAGTTTTGCTATGGACGAGTAGCTCAGTGATAAATCACGTAGAAAAAATTTTTCTACGAG # Right flank : AGCAACTGTTTTTGGGTAGTGTTATTTGAAAATACGATATACGAGTGGTAGAGACTAGAATGCTTTCTTCTGGTTTCTATTTTTTTATATAAATTGGGGATGATTTTGTTAAAATTATAAAAAAATCAATGGAAATAAAACGTGTTATTTGCAAATTTTAGTTATTTAATGGTAGGATTATCGCAAAAAGTATTCCATTATGGGAGGTCTATTTATGGGATTGAATGAATTTATTTTGGGATTGAACAACTTAGAAAAAATCACTCGGGCTCCTGGTTTCTTTAAATTCACCGAGCATACGGTAGCGGCACACTCGTATCGAGTGGCTTCGATTGCTCAAGTTTTAGGGGATATCGAAGAAGTAAATGGTCAAAAGATCGACTGGAAACTTCTCTATGAAAAGGCACTGAACCATGATTATACCGAGCGCTTCATTGGTGACATCAAAACTCCAGTAAAATATGCAAGTAAAGAGTTGCGGGGGATGTTGCAAACGGTAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 70060-70293 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPHN01000007.1 Enterococcus sp. BSD2780061688st2 D3 strain BSD2780061688st2_D3 NODE_7_length_149357_cov_71.3334, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 70060 36 100.0 30 .................................... AAATGTATTACCTAATTTAAAAATATTATT 70126 36 100.0 30 .................................... CCTAGACTTGAAACAAGCACGCAGTTAAGC 70192 36 100.0 30 .................................... TCGTTTAGACGTTGCTATAGACGATTATAA 70258 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : GTTGAAGTAAAATCCATGATCGACAAATTGACCACTACGATCAGCGAATTGATCGACTACGAGCTATTGGATCATGAATTGGATTTGGAAAGTGATGAAATCACGGTATTAGAGCTGTTTAAAGCACTTGGTGTAAAAATTGAAACGCACAGTGATACCATCTTTGAGAAAATATTGGAGATATTGCAAGTATACAAATATCTATCTAAAAAGAAATTACTAGTTTTCGTCAATACATGCGCTTATTTTACGTTAAAGGAGCTATTGGAGATACAAAATTACATCTCTTTGTACAACATGGATGTTTTATTTCTTGAACCACGTAAAATTGAGGGAGTCCCTCAAAAGGTTTTAGATAAAGACTATTTTTTGACATAAAAACTATGCTAAAATGAACTTAAGAACGAATGACTTGAAGCAGTCATTCAGCATTCAAGACGAAAGTTTTGCTATGGACGAGTAGTTCGGTGATAAATCACGTAGAAAAAATTTTCTGCGAG # Right flank : CAGAGCTAGGATTGATTGCTACAGTGGGTGTGTTTTAGAGCTATGTTATTTGAATGTCTAGAGGATGAAGAATAGATGACCGAGGGGTTGTTTATTCTTTTTTTCATATAATTGGACGGCGATGCTTTCTGTTAGTAACATAAAGGAGAAGGGTGGTTGGGGATATGTTTGATTCAACGTTGATGGTTTGCTTGGATTGGCTGATGACGATTTTAAATCTTGCTTCGATCATTATTTTAGTGGTCGGTGTTTTTTTAGTATTAAAAACGTTGTTTGATTGGCGGACTTTGAAGAAAGATTATGGACAGCGAAATAGTCGCAATGCAGAGATTCGCAAATTGTTGGCTAGTTATATTTTATTAAGTTTAGAAGTTTTAGTGGTGGCAGATATCATTGAATCTGTCATCAAACCAACTTGGACAGATATTTTAAAACTTGCTTTGATTATTTTGATCCGTACGATCATTTCGTATTTCTTGAATTTAGAGATTGAAGAACAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //