Array 1 205-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOEJ010000010.1 Streptomyces olivaceus strain NRRL B-3009 scaffold_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 204 29 100.0 32 ............................. GAGGTGGCCGCGCTCCGCGCAGACACGCGCAG 143 29 100.0 32 ............................. GCGGGCGCACTCGTCGCGGCCATGGCCGGGGA 82 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GACACTTGTTCACCCGACGACCGGGAGCGGGTCGAGTGGCTGCCGGGCAACCCCGCCTGGGGCCACTGCGACATCACGGCGTTGATCGTCAACGACATCTTCGGCGGCGATCTCGTGGTCGGCGAGGTGTACCTCGACGGTGCTCAGCGCAACTTCCACTGGTGGAACAAGCTGCCCAACGGCATCGAGCTCGACCTGACACGCGAACAGTTCCAGCTCGGAGAGACCGTCACGGCCGCCCGTGTCGTCGAACGCCCGCCCGGCCCACTGCCCCGCCGCTACGAGGAGTACCTCCTGCTCCGCGAGCGCATGGCCGAACACCTCGGCCCGCTTCCGGAGCCTGCGTGAGGGAGAGCCGTGCGGCAGTCGGAATCCGCCGGAGCTGTGGTCGACCAACTCTGCGTACGCACGGACCGATACCGTGGGTGCCCTATTTGCCGGAATCTGCGAAAGTCACTGAAAACGCACCTCTGCGGTCATAAGCTCGCAGGTCAAACAGT # Right flank : CCGTGACGAACGGGCTATGTGCATTGTGGGTCCCTGCTCCCCGCACCCGCGGGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13096-11120 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOEJ010000010.1 Streptomyces olivaceus strain NRRL B-3009 scaffold_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13095 29 100.0 32 ............................. AACAGCCGCTTGCAGGGCGACGCGGACTGGCC 13034 29 96.6 32 ............................T ACACCGTGAGGTGGACGAGCACGTACCTGGGA 12973 29 100.0 32 ............................. TACCTCAACCGGCAGGCGCTCGATGCGCAGGA 12912 29 100.0 32 ............................. GCCACGGTGGCGCTGTTGCCCGCGCTCACGGC 12851 29 100.0 32 ............................. GGGTTAAAAAAATGGGTTAAAGGCTAGGGTAA 12790 29 100.0 32 ............................. AGAACGTTTGACTACGGGTCACAGGGCGCGAC 12729 29 96.6 31 .........................C... AGCCGAAGATCGGTGACGCTCACGACATGGC T [12704] 12668 29 100.0 32 ............................. GCCAGCAACACCGCCTCACGCTGCGCCGTCAT 12607 29 100.0 32 ............................. GAGATACGCCGAACCGGCGGACCTGCCATGCG 12546 29 100.0 33 ............................. GGTGCCGCTGGCGTGTCCCGGACGACGACCTCT 12484 29 100.0 32 ............................. TTCATGGACATCGACCCGGACGCGATCTACGA 12423 29 100.0 32 ............................. TGGCCGGCGATGGTGAGGACGGCCATGGCGGC 12362 29 96.6 31 .........................C... GTCCGGGTCACCAGACCCCGCACCGTCAGCC T [12337] 12301 29 96.6 30 .........................C... GGGGTCGGTCCCCTCGTAGTCCCCGGCGCC TT [12275] 12240 29 100.0 32 ............................. GTCTGGCGGTCACCGGGGAACCCCCACGTCGA 12179 29 100.0 32 ............................. GCGAGCGGGGTCGAGGACCAGGCCGCCCTGGT 12118 29 100.0 32 ............................. AGGGCTTTTGTCTTCGGGGGAGGCCACTCCCG 12057 29 100.0 32 ............................. GTGTAGCCGGTCGACGGGGACAGGTTCTTCAC 11996 29 96.6 31 .........................C... ACCGCCGCCAATGGCTCCGCACCCACGAACA T [11971] 11935 29 96.6 31 .........................C... CCGTCCACGAAGCCATCCGCCTGGCGCACTT T [11910] 11874 29 100.0 32 ............................. TCCGTGGTCTTGGGGTGCGGTGCTCCCTGTAC 11813 29 100.0 32 ............................. GCCGCGCTGGACCGGTACTACCGCCGGAACGG 11752 29 96.6 31 .........................C... TGGCCACCGGCTTTCGCACGGTGGCTCTGCC T [11727] 11691 29 100.0 32 ............................. GACATCGAGTCCAGTGTGCGCGCCGACCCCCG 11630 29 96.6 32 .....T....................... GGCATCACCAGGAGGCTGGCCGCCGCCCACCC 11569 29 100.0 32 ............................. GACTCGTTCAGGACCGTCACGCCGGGCGCCAG 11508 29 96.6 31 .........................C... CCGACACCGGCGACGGATTCGACGCCCCCAC T [11483] 11447 29 100.0 32 ............................. GTGCGGAGACGCGCCGTGTGAAGCAGGCCAAG 11386 29 100.0 32 ............................. TCCAACCGTCGCGTCGGCATCCACGAAGCCCT 11325 29 96.6 32 ..................A.......... GCCTCCTGCTGGTCCTCGCCGCGGTGGCGGTC 11264 29 96.6 27 .........................C... CCACGTTCTCGCTGATGGCGTCCGGGG 11208 28 69.0 32 .AAAG.TG.T.-.............C... GCGTATGACGGAACTGACCCCTTGGTGCTTGG 11148 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 97.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TGGCACGCGAACGCCGGGGTGGCCTTGCCGATGTCGTGCACCCCGGCGAGCCACACGGCGAGGGCACGTGCATCCGGCTCTCCGCCGGGCAGCGCCTCGGACACCAGCTTCCGCACGCTTGCGGGCAGCCACTGGTCCCACAACAGGCCGGCCACTGCGGCACTGTCCTCCATGTGCCGCCACAGCGGCAGCCAACCATCGCTCTCACGATCATGCTTCGCCCACACCGACCGAGCCGGCTCCCCAAGCCGACGCAGCAGGGCGGAACGGGCGTTCCCCCCATTACTCATGGGTGATTGATACAGGGAAAACCCGGCTAGCTATGCCAAAACGAAGAAACTGAGGATTCGGCGGAGAGGCAGCCCTCCCAAGACATACGTTGATCGGCTGACCCTGGAGACCTTATGATCGCGACCATCACCCGAACGCCCTATTTGTCGGAATCTGCAAAAGTCTCGGAAAACGCGCTCCCGCGCCCATAAACCCACAGGTCAAACAGT # Right flank : GACAACCAGGAAGACGGCAACCTCGTGGACATCTGCTCCCCGCGCCCGGGAATGGCTTGGCGGGCGCACAGGTCGAGGCGGTCAAGCGGCGCTACTGCGCGCGTCAGTGGCGATCGTCCCTGCGCGGTGGCTGGCTTGGATGGTGTCTCCACCGCACCGGTCGAGACGTCGTGGACCGGGTCAATAGGTGAGCGTCATCCGGGTTTCCGGCTTGTTGACGGTGTGGCCTAGGGCGCCCCCGGTGTTGGAGGGCGTGATGGTCAGGCGTGGTACTGCCAGGCGGGCGGCGCCCCATGCGTCGATGTGGGCGACGAGGTCTCGGGCCAGTTCTTCGCCGCGGGGCCCGTATGCGGTCGCGCCGAGTCGGAACGGGCGTTGCGGGTCGGCGTCTTCGCGGGTCACGGTCAGGTAGGCGAGGGAGCCGTCGTCGATCAGGGCGGGGGTGCGGGCCGGTGTGGTCGGCCTGCGGATCAGGGCTTGCTCCATGGCCTCGGGGGTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 22855-23799 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOEJ010000010.1 Streptomyces olivaceus strain NRRL B-3009 scaffold_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22855 29 100.0 32 ............................. TACTTGCGCGCGTACACGGGCCTGCACGCGCA 22916 29 100.0 32 ............................. CCGGCCATGGCGAGCCCCGTACCGATCGGGAC 22977 29 100.0 32 ............................. CCCCGGCCGACCCCGGCGAGCCACCCGCGCAC 23038 29 100.0 32 ............................. CTGGCCGCACTGCGCACACGGCGCAGACTCTG 23099 29 100.0 32 ............................. GTGCGGAGAGTCGGTGGAGCAGGAGACAACGG 23160 29 100.0 32 ............................. GTCGGCCAGGTACCGGGCGGTTGCCTCCGGGC 23221 29 100.0 32 ............................. CACTGTCCCCCATCGAGGAAGTTCTCGGTGAC 23282 29 100.0 33 ............................. AGGCCCTGACTGGCGGCGGCCAGCTCCTGCTCG 23344 29 96.6 32 ...............T............. GCCGTCGGCGATGTTCTTGTGCCAGGCACACC 23405 29 100.0 32 ............................. CCCGTGTCCCCGGGGATCTTGTTGATGAGCGG 23466 29 100.0 32 ............................. GGTTCGCGACGTCCGCGAGGACCGGGAGCGCG 23527 29 100.0 32 ............................. CAGTCGACGCTGGTGTGCAGCTGCACGACGGC 23588 29 100.0 32 ............................. TCGCAGTCCTGCCGGAGGCGTCCGGCCTGGGG 23649 29 100.0 32 ............................. ACCCCGGAGCTGCCGAACTGGGTGATCCGGGA 23710 29 96.6 32 .........G................... AGGAACCCGACGAGCGTCTCGGTTCCGTCCTC 23771 29 93.1 0 ........TG................... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.1 32 CTGCTCCCCACACCCGCGGGGATGGTCCC # Left flank : CGGCATCAACCACGACGGCCCCGAGGACTACGGAGACGAACTCTGGTGACCGTCATCGTCCTCACCAACTGCCCAGCCGGACTACGCGGCTTCCTCACCCGCTGGCTGCTGGAGATCTCCGCCGGCGTCTTCGTCGGCAACCCCTCGGCCCGGGTCCGCGACGCACTCTGGCAAGAGGTCCAGCAGTATGCGGACCAAGGCCGCGCCCTACTCGCCCACACCACGAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACACCTGGCACCCGACCGACCACGAAGGCATCACCCTCATCCACCGCCCCGACCCAAACGCGCCGACCCCCGGGCAAGCCCCAGCAGGCGGACCACTCCCCGGCTGGAGCAGGGCCGGCAGACGCCGCCGCTTCGGGAAAGGCTAATGCGCACTATGCGAGATACCCCCGATTTGCCGGAATCAACGAAAGTACTCGAAAACCGCTCCCTGCGCCCATAAACCCGCAGGTCACTCAGT # Right flank : CGCCCCTGTTCTGCGCCCTCACCTACCTGTTGCGCGACACGGAAGCTCATCGGGGCAGGGCCCCATCCCTGGCGCGGACGCCGTTCCACTCGCACCACACCACCTTGCCCGGTGACCGTTCCGCCACTCCCCACTTGTCGGCCAGCTCCGACACCAGCAGCAGTCCGCGCCCGTTCTCGTCCGACCGGTCGGGGGCCTGGGGTACGGCTGGCACCCCGTCCCCGCTGTCGTGGACCTCGACGCGCACACCGTCCCCGCAGGGCAGCAGCCGCAGCAGGAAGCCCCTGGCAGGTGGTGCGCCGTGCACCAGCGCGTTGGTCGCCAGTTCGCTCACGCACAGCGCCATGTCGTCCGCGCGCTCACACACACCCCAGTCGGCGAGCACCTCGTGCGCGAACGCCCGCGCAGCTGGGACGGACCGGCGCTCTCGGCGGTAGAAACGCTCACGTGAGGAGAGGGGTGGAGTTTCTTTGTTCACGTGACGAGAGTCACGCTCCGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 101323-100016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOEJ010000037.1 Streptomyces olivaceus strain NRRL B-3009 scaffold_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101322 29 100.0 32 ............................. GACATCACCGTGGCGGGCCTGGCCAGCGACAC 101261 29 100.0 32 ............................. GAACCACGTGATGCCGCCGATGACCTTCGTGA 101200 29 100.0 32 ............................. GGCGCCTGGGCCGCGGCCATCCTCCAGACCGC 101139 29 100.0 32 ............................. CACCACAACCACCAGCTGCGCACGCACTCGGC 101078 29 100.0 32 ............................. CCCTGTCTCCGGAGATCCCGAACCAGTCGGGC 101017 29 100.0 32 ............................. ACCGTGACGATCTGCGCCCGGAGACCCGCACC 100956 29 100.0 32 ............................. GGCGGCACGGTGCGGTGCTCGCGGCTCTCCCG 100895 29 100.0 32 ............................. CGGGTCGTGAACATCATCGGCTCGGACTTGAC 100834 29 100.0 32 ............................. CCGACCTGGCAGGCGCAGAGCATCCTCAAGGA 100773 29 100.0 32 ............................. CGACAGAGGTGGCGGTGTCGATCGGGCAGTGG 100712 29 100.0 32 ............................. GTCCCGCGCGTCGCATGGCCGTCGGGCGCGCC 100651 29 100.0 32 ............................. CTCACCACCGGAGCCTGGTCCGCCGGCGCGCC 100590 29 100.0 32 ............................. GAGGCGATTGCCTCCCTGATCCGAGACGCCAT 100529 29 100.0 32 ............................. CCGCGCCGGACACGGCACGCTGACCCCAGGGC 100468 29 96.6 32 ..........T.................. GCCCCGCTGACGCCGGAAGGGCGTCGCCGATT 100407 29 96.6 32 ...........................T. GCCGCCACCGGATGGGCCCTCGGACCCGACGG 100346 29 96.6 32 .........................C... AGCGCAGGCACCAGCGCTTCGGACGCGACGAT 100285 29 100.0 32 ............................. CTCGGCCGCCCCGTGCCGCTGGAGGACTCGCC 100224 29 100.0 32 ............................. GGCGACGGCTGCCTCCTCGTCCGATCTCTCGC 100163 29 100.0 31 ............................. AAGGCGGCCACAATGCCCGCCCCTCCGTCGT 100103 29 96.6 32 ........T.................... CAGTGCAGCAGCATTAACGGCGGAGCGCAGAA 100042 27 93.1 0 ...................--........ | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.1 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGCACCCGCGGGGATGGTCCCCGTGACGAACGGGCTATGTGCATTGTGGGTC # Right flank : CTGCGGATCGGCTTCAGGGTCGCTGGGTCAGTTCACCGGAGCTTCTCGCGCGTCTGCGCGCCGTCGGTTGGCGGCGCGCAGACGGGTGGCGGCGCGCAGACGGGTGGGGTGTGCTCGGTGCGGGGGCGGTCAGGCCCAGCAGCCGTTGACGGTGGCGGCGAGGCCGTCCATGGCGTCCTTGATGTCGCTCGGGTCGGCCGTCGAGTTGTTCTCGATGAAGGAGAAGATCCGCCAGTCGCCGTCCTCGGTCTTCGTGACACCGCTGAGGGCGACGGCGCCGGTGAGGGTGCCGGTCTTGGCCTGGACCTTGCCGACGGCGCACTCGGAGTTGGGGTCGTCGAAGCGGCCCCACTCCGGGCCGAGGCTCGCCCCGGCCTCACCGGCGACCGGCAGGCCCTCCAGGATCGAGCTGAGGGCGGGGGACTCGGTGATCGAGTCGAGGAGCTGCGCGAGGGTGGCGGCCGGGATGCGGTCGTCGCGGGAGAGGCCGCTGCCGTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //